Cow genome map
| Conread name: | Pig1-120P12 |
| Conread position: | 220-461 |
| Cow position: | chr1:77867544-77867781 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 220-551 |
| Cow position: | chr1:36874526-36874851 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 221-451 |
| Cow position: | chr1:33081554-33081316 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 124, 173 |
| Conread position: | 221-533 |
| Cow position: | chr1:67406152-67406465 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 111, 177 |
| Conread position: | 221-596 |
| Cow position: | chr1:55019990-55020374 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 146 |
| Conread position: | 223-455 |
| Cow position: | chr1:36234833-36234600 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 107, 173 |
| Conread position: | 223-551 |
| Cow position: | chr1:99837575-99837250 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 110 |
| Conread position: | 225-462 |
| Cow position: | chr1:22616137-22615913 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 38, 44 |
| Conread position: | 225-464 |
| Cow position: | chr1:82338301-82338061 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 101, 60 |
| Conread position: | 225-511 |
| Cow position: | chr1:101008090-101007817 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 52 |
| Conread position: | 225-550 |
| Cow position: | chr1:874152-874478 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 170 |
| Conread position: | 225-551 |
| Cow position: | chr1:100450678-100450348 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 79 |
| Conread position: | 225-552 |
| Cow position: | chr1:60119937-60120266 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 134 |
| Conread position: | 225-593 |
| Cow position: | chr1:68951156-68951519 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 225-596 |
| Cow position: | chr1:4032157-4032520 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 170 |
| Conread position: | 226-345 |
| Cow position: | chr1:77461905-77462024 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 226-368 |
| Cow position: | chr1:61149999-61149853 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 226-371 |
| Cow position: | chr1:100771452-100771300 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 226-386 |
| Cow position: | chr1:50931791-50931630 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 226-415 |
| Cow position: | chr1:56644122-56643931 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 103, 169 |
| Conread position: | 226-417 |
| Cow position: | chr1:71748528-71748339 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 226-445 |
| Cow position: | chr1:14981574-14981350 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 226-445 |
| Cow position: | chr1:25884551-25884332 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 226-448 |
| Cow position: | chr1:22388723-22388503 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 108, 133 |
| Conread position: | 226-451 |
| Cow position: | chr1:85529651-85529423 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 109, 63 |
| Conread position: | 226-453 |
| Cow position: | chr1:56634386-56634617 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 226-457 |
| Cow position: | chr1:66684791-66684556 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 76, 83 |
| Conread position: | 226-462 |
| Cow position: | chr1:5771185-5770950 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 80, 51 |
| Conread position: | 226-462 |
| Cow position: | chr1:55146054-55146292 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 100, 134 |
| Conread position: | 226-464 |
| Cow position: | chr1:24446210-24445979 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 226-464 |
| Cow position: | chr1:33987032-33986797 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 103, 153 |
| Conread position: | 226-468 |
| Cow position: | chr1:89484874-89485107 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 226-477 |
| Cow position: | chr1:43650138-43649909 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 76 |
| Conread position: | 226-493 |
| Cow position: | chr1:25856177-25856446 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 140 |
| Conread position: | 226-499 |
| Cow position: | chr1:22480729-22480443 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 235 |
| Conread position: | 226-508 |
| Cow position: | chr1:24561981-24561711 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 80 |
| Conread position: | 226-510 |
| Cow position: | chr1:58195328-58195047 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 82 |
| Conread position: | 226-511 |
| Cow position: | chr1:18282753-18283045 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 80, 168 |
| Conread position: | 226-519 |
| Cow position: | chr1:12419951-12419653 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 226-538 |
| Cow position: | chr1:77620060-77620374 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 165 |
| Conread position: | 226-550 |
| Cow position: | chr1:11854176-11853854 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 226-550 |
| Cow position: | chr1:99105374-99105048 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 164 |
| Conread position: | 226-551 |
| Cow position: | chr1:3340436-3340774 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 173 |
| Conread position: | 226-551 |
| Cow position: | chr1:3739514-3739834 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 149 |
| Conread position: | 226-551 |
| Cow position: | chr1:24571366-24571053 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 80 |
| Conread position: | 226-551 |
| Cow position: | chr1:27495012-27495332 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 226-551 |
| Cow position: | chr1:45289353-45289037 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 226-551 |
| Cow position: | chr1:55163440-55163759 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 226-551 |
| Cow position: | chr1:57957344-57957021 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 106 |
| Conread position: | 226-551 |
| Cow position: | chr1:100887732-100887412 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 35, 43 |
| Conread position: | 226-552 |
| Cow position: | chr1:12871509-12871169 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 102, 143 |
| Conread position: | 226-552 |
| Cow position: | chr1:31499135-31499465 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 171 |
| Conread position: | 226-552 |
| Cow position: | chr1:38382366-38382038 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 106, 152 |
| Conread position: | 226-552 |
| Cow position: | chr1:99690669-99690994 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 171 |
| Conread position: | 226-554 |
| Cow position: | chr1:27146146-27145814 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 226-573 |
| Cow position: | chr1:57087733-57087392 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 226-594 |
| Cow position: | chr1:78184221-78184579 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 226-595 |
| Cow position: | chr1:73756606-73756982 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 51 |
| Conread position: | 226-595 |
| Cow position: | chr1:96184493-96184124 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 58 |
| Conread position: | 226-596 |
| Cow position: | chr1:76020165-76019798 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 51 |
| Conread position: | 243-596 |
| Cow position: | chr1:7747772-7748112 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 256-593 |
| Cow position: | chr1:75966954-75967323 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 259 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 72, 99 |
| Conread position: | 413-595 |
| Cow position: | chr1:33811633-33811823 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 137, 0 |
Show alignments to all cow chromosomes.