Cow genome map
| Conread name: | Pig1-120P12 |
| Conread position: | 217-445 |
| Cow position: | chrX:22623977-22624207 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 111, 176 |
| Conread position: | 218-551 |
| Cow position: | chrX:11083084-11082757 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 40 |
| Conread position: | 219-552 |
| Cow position: | chrX:19228554-19228203 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 178 |
| Conread position: | 221-453 |
| Cow position: | chrX:8517133-8517367 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 106, 53 |
| Conread position: | 221-454 |
| Cow position: | chrX:3582721-3582957 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 103, 48 |
| Conread position: | 221-552 |
| Cow position: | chrX:12290266-12290593 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 223-462 |
| Cow position: | chrX:30833900-30833645 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 223-555 |
| Cow position: | chrX:42470406-42470076 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 225-455 |
| Cow position: | chrX:26749345-26749112 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 102, 42 |
| Conread position: | 225-552 |
| Cow position: | chrX:25281957-25281610 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 118, 171 |
| Conread position: | 226-327 |
| Cow position: | chrX:11632181-11632282 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 226-340 |
| Cow position: | chrX:20544571-20544458 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 226-354 |
| Cow position: | chrX:31435861-31435988 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 226-361 |
| Cow position: | chrX:16514713-16514572 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 226-366 |
| Cow position: | chrX:9161086-9160944 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 226-368 |
| Cow position: | chrX:27395465-27395317 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 226-373 |
| Cow position: | chrX:23908641-23908490 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 226-387 |
| Cow position: | chrX:31251799-31251960 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 226-452 |
| Cow position: | chrX:16324719-16324489 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 100, 171 |
| Conread position: | 226-457 |
| Cow position: | chrX:11855703-11855929 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 226-457 |
| Cow position: | chrX:24260079-24259847 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 122, 171 |
| Conread position: | 226-462 |
| Cow position: | chrX:29602506-29602281 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 226-462 |
| Cow position: | chrX:38840383-38840626 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 103, 173 |
| Conread position: | 226-464 |
| Cow position: | chrX:13058093-13058334 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 74 |
| Conread position: | 226-464 |
| Cow position: | chrX:31745963-31745727 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 226-464 |
| Cow position: | chrX:41067367-41067609 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 98, 171 |
| Conread position: | 226-468 |
| Cow position: | chrX:17200321-17200577 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 59, 176 |
| Conread position: | 226-474 |
| Cow position: | chrX:13266296-13266044 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 52 |
| Conread position: | 226-480 |
| Cow position: | chrX:158300-158048 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 113, 153 |
| Conread position: | 226-524 |
| Cow position: | chrX:41594748-41594443 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 111, 174 |
| Conread position: | 226-548 |
| Cow position: | chrX:27485937-27486262 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 51, 172 |
| Conread position: | 226-550 |
| Cow position: | chrX:502050-501731 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 101, 151 |
| Conread position: | 226-551 |
| Cow position: | chrX:34441913-34441595 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 226-551 |
| Cow position: | chrX:38072233-38071914 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 226-552 |
| Cow position: | chrX:7805910-7806236 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 167 |
| Conread position: | 226-552 |
| Cow position: | chrX:11674589-11674923 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 64 |
| Conread position: | 226-552 |
| Cow position: | chrX:20652932-20653254 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 226-552 |
| Cow position: | chrX:25329554-25329871 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 226-552 |
| Cow position: | chrX:35288188-35288517 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 171 |
| Conread position: | 226-552 |
| Cow position: | chrX:39546446-39546116 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 172 |
| Conread position: | 226-554 |
| Cow position: | chrX:9299313-9298973 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 92, 175 |
| Conread position: | 226-555 |
| Cow position: | chrX:9837652-9838000 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 103, 51 |
| Conread position: | 226-560 |
| Cow position: | chrX:15007617-15007289 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 226-570 |
| Cow position: | chrX:23414854-23414496 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 66, 171 |
| Conread position: | 226-578 |
| Cow position: | chrX:19636446-19636795 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 102, 60 |
| Conread position: | 226-586 |
| Cow position: | chrX:27705127-27705486 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 86 |
| Conread position: | 226-588 |
| Cow position: | chrX:15140014-15139654 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 42 |
| Conread position: | 226-591 |
| Cow position: | chrX:4123369-4123741 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 126 |
| Conread position: | 226-593 |
| Cow position: | chrX:8869851-8869490 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 113 |
| Conread position: | 226-593 |
| Cow position: | chrX:13785849-13785451 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 282 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 43, 170 |
| Conread position: | 226-593 |
| Cow position: | chrX:17497630-17497997 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 165 |
| Conread position: | 226-594 |
| Cow position: | chrX:35937530-35937166 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 63, 75 |
| Conread position: | 226-596 |
| Cow position: | chrX:31728992-31729358 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 164 |
| Conread position: | 226-596 |
| Cow position: | chrX:35680879-35681253 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 48 |
| Conread position: | 241-595 |
| Cow position: | chrX:24200744-24201100 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 295-596 |
| Cow position: | chrX:7695367-7695663 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 95 |
| Conread position: | 350-591 |
| Cow position: | chrX:40558018-40557771 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 41 |
| Conread position: | 358-593 |
| Cow position: | chrX:7645924-7646168 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 135, 33 |
| Conread position: | 471-596 |
| Cow position: | chrX:1514624-1514492 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.