Cow genome map

Conread name: Pig1-127K02

Conread position: 1-148
Cow position: chr22:10339152-10339002 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 1-148
Cow position: chr22:25539963-25540116 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 28, 10

Conread position: 1-207
Cow position: chr22:40789530-40789744 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 28, 9

Conread position: 1-227
Cow position: chr22:14754971-14755194 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 15

Conread position: 1-228
Cow position: chr22:13957681-13957437 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 1-241
Cow position: chr22:25361450-25361698 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 169
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 52

Conread position: 2-142
Cow position: chr22:12188517-12188370 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 2-149
Cow position: chr22:12195604-12195450 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 2-221
Cow position: chr22:10553721-10553497 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 27, 164

Conread position: 2-221
Cow position: chr22:14844532-14844745 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 98

Conread position: 2-223
Cow position: chr22:4054619-4054401 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 66, 28

Conread position: 2-224
Cow position: chr22:8882979-8883214 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 2-225
Cow position: chr22:5712552-5712790 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 200

Conread position: 2-228
Cow position: chr22:16291955-16291725 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 155
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 3-226
Cow position: chr22:27828343-27828584 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 4-224
Cow position: chr22:16234120-16234340 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 25, 149

Conread position: 6-203
Cow position: chr22:1911632-1911833 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 146

Conread position: 6-217
Cow position: chr22:17184718-17184507 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 26, 147

Conread position: 6-221
Cow position: chr22:25477016-25477229 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 23, 145

Conread position: 6-221
Cow position: chr22:35029237-35029460 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 91

Conread position: 6-226
Cow position: chr22:5016467-5016696 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 29, 22

Conread position: 6-227
Cow position: chr22:14178859-14178626 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 23, 220

Conread position: 6-229
Cow position: chr22:876244-876468 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 168
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 25, 145

Conread position: 7-138
Cow position: chr22:11458791-11458922 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 22, 107

Conread position: 7-146
Cow position: chr22:42050543-42050684 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 22, 130

Conread position: 7-148
Cow position: chr22:37029635-37029491 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 7-169
Cow position: chr22:11344479-11344643 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 125

Conread position: 7-191
Cow position: chr22:5337628-5337445 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 24, 113

Conread position: 7-192
Cow position: chr22:14006153-14006342 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 13, 30

Conread position: 7-203
Cow position: chr22:12749932-12749730 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 22, 189

Conread position: 7-211
Cow position: chr22:2523931-2524141 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 22, 152

Conread position: 7-212
Cow position: chr22:12892397-12892169 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 7-212
Cow position: chr22:21746614-21746830 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 120

Conread position: 7-212
Cow position: chr22:25221926-25221711 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 25, 113

Conread position: 7-214
Cow position: chr22:17128980-17129197 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 25, 193

Conread position: 7-217
Cow position: chr22:16806564-16806784 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 157

Conread position: 7-217
Cow position: chr22:33399518-33399292 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 22, 7

Conread position: 7-220
Cow position: chr22:42617969-42618195 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 22, 196

Conread position: 7-221
Cow position: chr22:534468-534690 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 0

Conread position: 7-221
Cow position: chr22:30269381-30269602 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 25, 76

Conread position: 7-224
Cow position: chr22:5837239-5837465 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 22, 125

Conread position: 7-224
Cow position: chr22:24915804-24916034 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 7-225
Cow position: chr22:4156848-4156611 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 7-225
Cow position: chr22:8733369-8733141 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 22, 0

Conread position: 7-225
Cow position: chr22:27224097-27224313 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 136

Conread position: 7-226
Cow position: chr22:12315780-12316013 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 22, 90

Conread position: 7-226
Cow position: chr22:20626806-20627039 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 22, 0

Conread position: 7-226
Cow position: chr22:26184191-26183977 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 25, 144

Conread position: 7-226
Cow position: chr22:41853874-41854108 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 7-227
Cow position: chr22:41245217-41245438 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 98

Conread position: 7-228
Cow position: chr22:1858300-1858530 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 21, 190

Conread position: 7-229
Cow position: chr22:530600-530368 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 16, 38

Conread position: 7-229
Cow position: chr22:8287156-8287390 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 22, 0

Conread position: 7-229
Cow position: chr22:25943444-25943668 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 25, 146

Conread position: 7-233
Cow position: chr22:40349313-40349554 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 25, 130

Conread position: 7-236
Cow position: chr22:3945347-3945570 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 179
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 20, 59

Conread position: 7-237
Cow position: chr22:4075918-4075668 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 7-241
Cow position: chr22:1500874-1501102 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 143, 20

Conread position: 7-244
Cow position: chr22:4583530-4583785 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 251

Conread position: 8-147
Cow position: chr22:27047436-27047296 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 21, 37

Conread position: 8-148
Cow position: chr22:6326414-6326561 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 8-148
Cow position: chr22:13841109-13841257 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 8-205
Cow position: chr22:18847994-18847786 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 23, 0

Conread position: 8-212
Cow position: chr22:24584093-24583880 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 34, 18

Conread position: 8-217
Cow position: chr22:28685301-28685504 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 21

Conread position: 8-224
Cow position: chr22:33949001-33948774 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 34, 87

Conread position: 8-228
Cow position: chr22:25809306-25809074 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 19, 39

Conread position: 8-229
Cow position: chr22:21205300-21205512 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 34, 20

Conread position: 8-233
Cow position: chr22:6097047-6096803 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 8-233
Cow position: chr22:6754297-6754049 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 9-159
Cow position: chr22:12968098-12967940 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 9-205
Cow position: chr22:15737205-15737415 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 198

Conread position: 9-214
Cow position: chr22:4026796-4026993 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 165
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 7, 30

Conread position: 9-214
Cow position: chr22:23675992-23675779 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 23, 38

Conread position: 9-217
Cow position: chr22:29955027-29954818 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 57, 14

Conread position: 9-223
Cow position: chr22:644795-644578 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 21, 109

Conread position: 9-223
Cow position: chr22:28672116-28672337 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 201

Conread position: 9-225
Cow position: chr22:14381630-14381845 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 20, 179

Conread position: 9-226
Cow position: chr22:14372150-14372371 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 20, 38

Conread position: 9-227
Cow position: chr22:8090557-8090328 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 20, 0

Conread position: 9-227
Cow position: chr22:37201820-37202054 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 20, 120

Conread position: 9-229
Cow position: chr22:11130841-11131077 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 20, 221

Conread position: 9-240
Cow position: chr22:19047844-19047611 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 20, 141

Conread position: 9-279
Cow position: chr22:5384626-5384895 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 213
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 23, 88

Conread position: 10-211
Cow position: chr22:14509505-14509302 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 162
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 19, 135

Conread position: 10-212
Cow position: chr22:25690306-25690086 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 10-239
Cow position: chr22:14143138-14142905 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 23, 148

Conread position: 11-151
Cow position: chr22:14924759-14924610 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 11-204
Cow position: chr22:29842731-29842537 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 117

Conread position: 11-217
Cow position: chr22:15668495-15668286 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 16, 52

Conread position: 11-222
Cow position: chr22:40869806-40870032 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 38

Conread position: 13-217
Cow position: chr22:27508640-27508838 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 8, 24

Conread position: 14-148
Cow position: chr22:26659027-26659160 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 13, 31

Conread position: 14-217
Cow position: chr22:26017766-26017563 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 13, 160

Conread position: 14-229
Cow position: chr22:44410700-44410924 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 26, 14

Conread position: 15-217
Cow position: chr22:28937955-28937745 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 110

Conread position: 16-151
Cow position: chr22:17814211-17814354 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 16-204
Cow position: chr22:9597592-9597401 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 13

Conread position: 20-204
Cow position: chr22:1081770-1081954 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 9, 133

Conread position: 21-229
Cow position: chr22:9994351-9994564 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 15

Conread position: 24-190
Cow position: chr22:18218920-18218757 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 164, 35

Conread position: 31-220
Cow position: chr22:1602333-1602526 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 16

Conread position: 32-212
Cow position: chr22:20472363-20472181 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 27, 91

Conread position: 32-216
Cow position: chr22:33592435-33592256 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 63

Conread position: 33-233
Cow position: chr22:1651495-1651702 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 9, 17

Conread position: 36-220
Cow position: chr22:3470289-3470490 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 36-221
Cow position: chr22:38320683-38320507 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 72

Conread position: 36-230
Cow position: chr22:7913467-7913664 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 107, 13

Conread position: 37-221
Cow position: chr22:44468809-44468987 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 12, 61

Conread position: 37-229
Cow position: chr22:40864503-40864695 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 103

Conread position: 38-202
Cow position: chr22:30483921-30484086 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 38-212
Cow position: chr22:27401740-27401925 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 24, 165

Conread position: 38-213
Cow position: chr22:1830055-1830236 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 105, 0

Conread position: 38-217
Cow position: chr22:22613112-22613299 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 13, 85

Conread position: 38-217
Cow position: chr22:25742943-25742769 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 112

Conread position: 38-221
Cow position: chr22:2109621-2109429 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 38-221
Cow position: chr22:6327763-6327573 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 10

Conread position: 38-224
Cow position: chr22:38939938-38939748 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 23, 46

Conread position: 38-228
Cow position: chr22:23249723-23249528 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 152
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 21, 10

Conread position: 38-229
Cow position: chr22:5616308-5616505 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 11, 94

Conread position: 38-229
Cow position: chr22:15568010-15567813 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 38-230
Cow position: chr22:4060941-4060738 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 38-237
Cow position: chr22:43398008-43398216 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 21, 11

Conread position: 39-230
Cow position: chr22:34675528-34675711 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 85, 58

Conread position: 39-234
Cow position: chr22:30687030-30687232 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 23, 182

Conread position: 40-214
Cow position: chr22:25168280-25168118 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 40-217
Cow position: chr22:36539643-36539462 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 97, 82

Conread position: 40-218
Cow position: chr22:43730295-43730480 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 97, 13

Conread position: 41-208
Cow position: chr22:29134967-29135143 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 7

Conread position: 42-217
Cow position: chr22:2876791-2876601 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 0

Conread position: 42-221
Cow position: chr22:10682501-10682317 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 18, 7

Conread position: 43-157
Cow position: chr22:35533224-35533110 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 43-191
Cow position: chr22:30083621-30083479 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 61, 36

Conread position: 43-212
Cow position: chr22:10295047-10295220 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 43

Conread position: 43-220
Cow position: chr22:3533944-3534131 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 43-221
Cow position: chr22:12777369-12777183 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 19, 0

Conread position: 43-224
Cow position: chr22:7086544-7086365 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 89

Conread position: 43-225
Cow position: chr22:45772016-45771821 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 43-226
Cow position: chr22:45012745-45012559 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 104, 177

Conread position: 43-228
Cow position: chr22:28370954-28371139 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 128
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 79, 21

Conread position: 43-229
Cow position: chr22:1309722-1309529 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 100, 154

Conread position: 43-229
Cow position: chr22:1821577-1821380 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 43-230
Cow position: chr22:8412539-8412738 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 6, 184

Conread position: 43-230
Cow position: chr22:44684495-44684686 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 19, 45

Conread position: 45-212
Cow position: chr22:6360174-6360001 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 15, 0

Conread position: 45-217
Cow position: chr22:45788620-45788803 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 68

Conread position: 45-228
Cow position: chr22:23037736-23037557 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 45-305
Cow position: chr22:3325601-3325872 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 152
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 46-221
Cow position: chr22:32690426-32690258 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 12, 52

Conread position: 47-220
Cow position: chr22:12997821-12997639 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 48-204
Cow position: chr22:6793857-6793696 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 85, 0

Conread position: 48-211
Cow position: chr22:8397811-8397654 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 48-211
Cow position: chr22:10468528-10468701 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 95, 0

Conread position: 48-214
Cow position: chr22:29090387-29090226 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 90

Conread position: 48-237
Cow position: chr22:43873074-43873253 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 47, 90

Conread position: 48-273
Cow position: chr22:20862733-20862512 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 99, 39

Conread position: 49-214
Cow position: chr22:14643854-14644027 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 49-221
Cow position: chr22:42684909-42685083 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 42

Conread position: 49-228
Cow position: chr22:4564095-4563933 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 49-244
Cow position: chr22:39908073-39907868 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 54-229
Cow position: chr22:1551924-1552104 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 83, 0

Conread position: 55-217
Cow position: chr22:16564172-16564342 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 77, 59

Conread position: 55-247
Cow position: chr22:11221208-11221403 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 19, 0

Conread position: 56-217
Cow position: chr22:17652460-17652629 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 87, 0

Conread position: 57-221
Cow position: chr22:21905497-21905669 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 76, 0

Conread position: 58-212
Cow position: chr22:2201767-2201926 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 84, 143

Conread position: 58-212
Cow position: chr22:9127435-9127590 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 121, 114

Conread position: 58-212
Cow position: chr22:30818240-30818401 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 85, 61

Conread position: 58-212
Cow position: chr22:44717748-44717912 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 58-213
Cow position: chr22:7518582-7518747 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 58-217
Cow position: chr22:10557306-10557468 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 74, 152

Conread position: 58-220
Cow position: chr22:12157817-12157649 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 80, 133

Conread position: 58-221
Cow position: chr22:12313452-12313620 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 85, 32

Conread position: 58-222
Cow position: chr22:30699208-30699368 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 160, 61

Conread position: 58-223
Cow position: chr22:10532527-10532696 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 58-225
Cow position: chr22:40374636-40374811 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 58-226
Cow position: chr22:12803358-12803181 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 58-227
Cow position: chr22:8357613-8357785 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 135

Conread position: 58-229
Cow position: chr22:29256629-29256794 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 162, 88

Conread position: 58-231
Cow position: chr22:34735891-34736060 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 110, 64

Conread position: 58-237
Cow position: chr22:10122406-10122584 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 155, 0

Conread position: 58-249
Cow position: chr22:23630324-23630127 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 85, 32

Conread position: 58-308
Cow position: chr22:9735296-9735551 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 85, 165

Conread position: 59-212
Cow position: chr22:2184684-2184524 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 59-217
Cow position: chr22:15695697-15695536 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 60-210
Cow position: chr22:5467323-5467175 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 60-222
Cow position: chr22:12741243-12741081 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 103, 76

Conread position: 60-224
Cow position: chr22:11837035-11836870 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 78, 62

Conread position: 60-226
Cow position: chr22:19548884-19549047 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 127, 0

Conread position: 60-226
Cow position: chr22:27171237-27171064 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 30, 161

Conread position: 61-208
Cow position: chr22:18145566-18145723 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 62-217
Cow position: chr22:39696333-39696494 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 45

Conread position: 63-217
Cow position: chr22:10763815-10763975 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 79, 0

Conread position: 64-234
Cow position: chr22:243146-243316 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 13

Conread position: 64-239
Cow position: chr22:17852603-17852421 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 58

Conread position: 68-229
Cow position: chr22:8157820-8157659 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 72, 116

Conread position: 68-237
Cow position: chr22:30362656-30362478 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 69-224
Cow position: chr22:30471642-30471494 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 72-226
Cow position: chr22:45019605-45019443 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 74-199
Cow position: chr22:6128134-6127999 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 74-212
Cow position: chr22:4563406-4563548 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 74-217
Cow position: chr22:17897725-17897868 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 113

Conread position: 74-229
Cow position: chr22:18838299-18838457 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 68, 52

Conread position: 79-229
Cow position: chr22:18259267-18259425 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 40

Conread position: 80-230
Cow position: chr22:11201913-11202062 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 78, 0

Conread position: 84-237
Cow position: chr22:28803971-28804128 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 134

Conread position: 84-256
Cow position: chr22:8063219-8063038 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 50, 38

Conread position: 100-284
Cow position: chr22:13849186-13849010 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 66

Conread position: 104-230
Cow position: chr22:7528495-7528621 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 34, 9

Conread position: 112-222
Cow position: chr22:10575670-10575780 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 142-227
Cow position: chr22:16621314-16621398 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 77
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 77, 0

Show alignments to all cow chromosomes.