Cow genome map
| Conread name: | Pig1-129C12 |
| Conread position: | 2-224 |
| Cow position: | chr13:22944358-22944581 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 4-486 |
| Cow position: | chr13:14610489-14610961 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 334 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 23-344 |
| Cow position: | chr13:17130045-17129724 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 15 |
| Conread position: | 28-344 |
| Cow position: | chr13:25347692-25347397 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 103, 7 |
| Conread position: | 37-234 |
| Cow position: | chr13:26307579-26307775 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 37-477 |
| Cow position: | chr13:13498707-13498271 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 170 |
| Conread position: | 37-480 |
| Cow position: | chr13:15853245-15853680 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 13 |
| Conread position: | 37-486 |
| Cow position: | chr13:55952533-55952984 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 19 |
| Conread position: | 38-198 |
| Cow position: | chr13:48946284-48946123 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 124, 12 |
| Conread position: | 38-217 |
| Cow position: | chr13:43639945-43639763 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 122, 166 |
| Conread position: | 38-234 |
| Cow position: | chr13:25785698-25785897 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 123, 18 |
| Conread position: | 38-237 |
| Cow position: | chr13:50187999-50188198 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 135, 5 |
| Conread position: | 38-240 |
| Cow position: | chr13:27885457-27885250 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 125, 12 |
| Conread position: | 38-252 |
| Cow position: | chr13:34720510-34720294 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 38-395 |
| Cow position: | chr13:12986428-12986076 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 22 |
| Conread position: | 38-486 |
| Cow position: | chr13:8643588-8644063 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 170 |
| Conread position: | 38-486 |
| Cow position: | chr13:26366806-26367276 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 167 |
| Conread position: | 38-486 |
| Cow position: | chr13:56232163-56231697 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 12 |
| Conread position: | 38-491 |
| Cow position: | chr13:25343403-25342945 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 5 |
| Conread position: | 39-344 |
| Cow position: | chr13:20460451-20460757 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 167 |
| Conread position: | 40-344 |
| Cow position: | chr13:20268358-20268071 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 42-190 |
| Cow position: | chr13:53827057-53826910 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 13 |
| Conread position: | 42-412 |
| Cow position: | chr13:55382842-55383220 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 72 |
| Conread position: | 42-480 |
| Cow position: | chr13:17935905-17935464 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 160 |
| Conread position: | 47-224 |
| Cow position: | chr13:16810379-16810200 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 116, 156 |
| Conread position: | 47-486 |
| Cow position: | chr13:41355958-41356383 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 299 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 115, 96 |
| Conread position: | 47-487 |
| Cow position: | chr13:41201261-41201718 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 154 |
| Conread position: | 47-501 |
| Cow position: | chr13:20630904-20630452 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 156 |
| Conread position: | 50-486 |
| Cow position: | chr13:44433544-44434000 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 157 |
| Conread position: | 51-217 |
| Cow position: | chr13:33247059-33246891 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 56-344 |
| Cow position: | chr13:51135939-51135654 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 105, 61 |
| Conread position: | 68-475 |
| Cow position: | chr13:19327748-19328151 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 47 |
| Conread position: | 70-486 |
| Cow position: | chr13:48204191-48203769 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 37 |
| Conread position: | 74-417 |
| Cow position: | chr13:51091466-51091099 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 69, 131 |
| Conread position: | 88-459 |
| Cow position: | chr13:56227771-56227376 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 56, 119 |
| Conread position: | 161-480 |
| Cow position: | chr13:25792404-25792063 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 230-480 |
| Cow position: | chr13:6350080-6349815 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 113, 212 |
| Conread position: | 250-420 |
| Cow position: | chr13:27228218-27228036 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 95, 11 |
| Conread position: | 257-343 |
| Cow position: | chr13:22944595-22944681 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 75 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-389 |
| Cow position: | chr13:34720310-34720172 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 257-395 |
| Cow position: | chr13:33246879-33246743 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 257-486 |
| Cow position: | chr13:31437523-31437277 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 75, 225 |
Show alignments to all cow chromosomes.