Cow genome map
| Conread name: | Pig1-129C12 |
| Conread position: | 6-374 |
| Cow position: | chr3:24773451-24773088 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 158, 28 |
| Conread position: | 15-344 |
| Cow position: | chr3:48037198-48037507 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 26-480 |
| Cow position: | chr3:60068039-60067579 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 37-237 |
| Cow position: | chr3:75097485-75097691 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 168 |
| Conread position: | 37-244 |
| Cow position: | chr3:77332707-77332918 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 124, 13 |
| Conread position: | 37-347 |
| Cow position: | chr3:7830235-7830550 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 17 |
| Conread position: | 37-486 |
| Cow position: | chr3:28207962-28207531 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 137, 43 |
| Conread position: | 38-151 |
| Cow position: | chr3:39173196-39173085 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 38-226 |
| Cow position: | chr3:42935830-42936020 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 38-232 |
| Cow position: | chr3:22702442-22702637 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 38-234 |
| Cow position: | chr3:6190478-6190279 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 120, 167 |
| Conread position: | 38-234 |
| Cow position: | chr3:28462287-28462484 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 122, 16 |
| Conread position: | 38-237 |
| Cow position: | chr3:3804050-3803848 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 38-240 |
| Cow position: | chr3:38124638-38124842 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 136, 16 |
| Conread position: | 38-243 |
| Cow position: | chr3:60520662-60520864 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 136, 12 |
| Conread position: | 38-344 |
| Cow position: | chr3:2306122-2306429 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 19, 166 |
| Conread position: | 38-376 |
| Cow position: | chr3:74711466-74711133 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 123, 159 |
| Conread position: | 38-476 |
| Cow position: | chr3:19696741-19696303 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 19 |
| Conread position: | 38-485 |
| Cow position: | chr3:85150238-85149790 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 38-486 |
| Cow position: | chr3:14296494-14296057 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 144, 12 |
| Conread position: | 38-486 |
| Cow position: | chr3:28485695-28485259 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 295 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 136, 200 |
| Conread position: | 38-487 |
| Cow position: | chr3:35352370-35352803 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 105, 12 |
| Conread position: | 38-536 |
| Cow position: | chr3:49849783-49850303 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 39-298 |
| Cow position: | chr3:53578232-53578494 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 127, 15 |
| Conread position: | 39-390 |
| Cow position: | chr3:84954624-84954969 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 124, 16 |
| Conread position: | 39-487 |
| Cow position: | chr3:78548639-78549074 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 124, 16 |
| Conread position: | 39-506 |
| Cow position: | chr3:11030151-11030630 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 168 |
| Conread position: | 42-239 |
| Cow position: | chr3:56305307-56305107 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 42-477 |
| Cow position: | chr3:77944098-77943679 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 118, 12 |
| Conread position: | 42-486 |
| Cow position: | chr3:1839927-1839462 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 163 |
| Conread position: | 46-402 |
| Cow position: | chr3:3253554-3253907 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 199 |
| Conread position: | 47-215 |
| Cow position: | chr3:59205744-59205573 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 92, 148 |
| Conread position: | 47-234 |
| Cow position: | chr3:36780515-36780705 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 116, 155 |
| Conread position: | 47-342 |
| Cow position: | chr3:9194765-9195053 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 182, 66 |
| Conread position: | 47-464 |
| Cow position: | chr3:58307125-58306711 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 304 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 102, 155 |
| Conread position: | 47-486 |
| Cow position: | chr3:10687749-10688209 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 157 |
| Conread position: | 47-486 |
| Cow position: | chr3:17641616-17642083 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 154 |
| Conread position: | 50-193 |
| Cow position: | chr3:22699301-22699158 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 139 |
| Conread position: | 50-240 |
| Cow position: | chr3:22696567-22696758 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 110, 151 |
| Conread position: | 50-243 |
| Cow position: | chr3:60507875-60508068 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 124, 188 |
| Conread position: | 51-234 |
| Cow position: | chr3:36783243-36783432 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 112, 155 |
| Conread position: | 51-480 |
| Cow position: | chr3:10215902-10215459 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 277 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 111, 82 |
| Conread position: | 56-240 |
| Cow position: | chr3:6645708-6645521 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 120, 113 |
| Conread position: | 57-505 |
| Cow position: | chr3:6762117-6762598 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 97 |
| Conread position: | 64-240 |
| Cow position: | chr3:29705716-29705536 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 65-402 |
| Cow position: | chr3:28443950-28443623 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 109, 61 |
| Conread position: | 66-233 |
| Cow position: | chr3:30988274-30988104 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 100, 140 |
| Conread position: | 69-238 |
| Cow position: | chr3:32168558-32168386 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 94, 111 |
| Conread position: | 71-486 |
| Cow position: | chr3:2060101-2059695 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 9, 133 |
| Conread position: | 71-486 |
| Cow position: | chr3:48090944-48091349 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 92, 104 |
| Conread position: | 76-486 |
| Cow position: | chr3:7810092-7810506 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 151, 91 |
| Conread position: | 133-343 |
| Cow position: | chr3:44437724-44437936 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 138-486 |
| Cow position: | chr3:65525891-65526255 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 153-491 |
| Cow position: | chr3:28692060-28692402 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 186-486 |
| Cow position: | chr3:6049652-6049336 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 206-480 |
| Cow position: | chr3:11952581-11952872 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 243-477 |
| Cow position: | chr3:5534437-5534203 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 111, 11 |
| Conread position: | 248-486 |
| Cow position: | chr3:28464644-28464898 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 145 |
| Conread position: | 249-420 |
| Cow position: | chr3:5619342-5619166 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 148 |
| Conread position: | 249-510 |
| Cow position: | chr3:84919291-84919010 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 98, 37 |
| Conread position: | 257-480 |
| Cow position: | chr3:3251540-3251307 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 73, 218 |
| Conread position: | 257-480 |
| Cow position: | chr3:56308283-56308516 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 88, 145 |
| Conread position: | 257-485 |
| Cow position: | chr3:31360188-31360424 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 257-486 |
| Cow position: | chr3:7812704-7812469 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 62 |
| Conread position: | 257-486 |
| Cow position: | chr3:22696754-22697003 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 257-486 |
| Cow position: | chr3:22699125-22698887 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 155 |
| Conread position: | 264-486 |
| Cow position: | chr3:49006241-49006005 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 215 |
| Conread position: | 287-500 |
| Cow position: | chr3:82515718-82515947 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 334-486 |
| Cow position: | chr3:83785713-83785870 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.