Cow genome map
| Conread name: | Pig1-129C12 |
| Conread position: | 9-486 |
| Cow position: | chr5:70704793-70705273 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 53 |
| Conread position: | 29-486 |
| Cow position: | chr5:47772098-47771623 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 176 |
| Conread position: | 32-479 |
| Cow position: | chr5:24456597-24456162 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 296 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 141, 74 |
| Conread position: | 37-346 |
| Cow position: | chr5:46784536-46784228 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 90, 13 |
| Conread position: | 37-454 |
| Cow position: | chr5:18584784-18585233 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 117, 17 |
| Conread position: | 37-475 |
| Cow position: | chr5:9368464-9368895 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 20, 239 |
| Conread position: | 37-486 |
| Cow position: | chr5:46273550-46273110 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 137, 51 |
| Conread position: | 37-486 |
| Cow position: | chr5:47357632-47358066 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 315 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 138, 13 |
| Conread position: | 37-486 |
| Cow position: | chr5:56260267-56260698 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 185, 89 |
| Conread position: | 38-198 |
| Cow position: | chr5:42183890-42183726 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 38-233 |
| Cow position: | chr5:35335486-35335294 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 136, 37 |
| Conread position: | 38-238 |
| Cow position: | chr5:16038140-16037940 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 136, 12 |
| Conread position: | 38-243 |
| Cow position: | chr5:58439116-58439322 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 128, 161 |
| Conread position: | 38-245 |
| Cow position: | chr5:73888139-73887930 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 38-344 |
| Cow position: | chr5:39800992-39800685 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 38-395 |
| Cow position: | chr5:67962232-67962570 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 302, 9 |
| Conread position: | 38-458 |
| Cow position: | chr5:21042734-21043147 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 288 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 121, 16 |
| Conread position: | 38-477 |
| Cow position: | chr5:47840179-47839717 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 166 |
| Conread position: | 38-479 |
| Cow position: | chr5:25896602-25896148 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 165 |
| Conread position: | 38-480 |
| Cow position: | chr5:29075776-29076232 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 12 |
| Conread position: | 38-480 |
| Cow position: | chr5:37371882-37372339 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 326 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 16, 171 |
| Conread position: | 38-486 |
| Cow position: | chr5:13420774-13421215 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 105, 134 |
| Conread position: | 38-486 |
| Cow position: | chr5:23628259-23628723 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 16 |
| Conread position: | 38-486 |
| Cow position: | chr5:29537276-29536803 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 12 |
| Conread position: | 38-486 |
| Cow position: | chr5:30204349-30204818 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 86 |
| Conread position: | 38-486 |
| Cow position: | chr5:63516081-63515618 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 155 |
| Conread position: | 38-488 |
| Cow position: | chr5:48275461-48274998 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 52, 85 |
| Conread position: | 39-468 |
| Cow position: | chr5:42785802-42785361 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 40-240 |
| Cow position: | chr5:34150974-34150773 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 110, 10 |
| Conread position: | 42-240 |
| Cow position: | chr5:13726437-13726636 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 42-486 |
| Cow position: | chr5:64104187-64103725 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 46-486 |
| Cow position: | chr5:60969067-60969500 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 117, 216 |
| Conread position: | 47-240 |
| Cow position: | chr5:45198975-45198779 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 113, 154 |
| Conread position: | 47-252 |
| Cow position: | chr5:67107100-67107305 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 116, 136 |
| Conread position: | 47-486 |
| Cow position: | chr5:19914340-19914788 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 47-486 |
| Cow position: | chr5:75573568-75573111 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 51-381 |
| Cow position: | chr5:18709710-18710052 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 157 |
| Conread position: | 66-486 |
| Cow position: | chr5:66106478-66106916 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 6 |
| Conread position: | 71-480 |
| Cow position: | chr5:72939818-72939391 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 90-486 |
| Cow position: | chr5:9969366-9969763 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 99-486 |
| Cow position: | chr5:47619719-47619313 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 105 |
| Conread position: | 133-501 |
| Cow position: | chr5:64796066-64796458 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 75 |
| Conread position: | 165-480 |
| Cow position: | chr5:21514919-21514607 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 168-477 |
| Cow position: | chr5:2441338-2441014 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 190-486 |
| Cow position: | chr5:42183444-42183131 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 155, 11 |
| Conread position: | 254-486 |
| Cow position: | chr5:12219192-12219439 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 91, 23 |
| Conread position: | 257-462 |
| Cow position: | chr5:23742403-23742622 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 257-486 |
| Cow position: | chr5:42100024-42099788 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 88, 73 |
| Conread position: | 257-486 |
| Cow position: | chr5:58439318-58439545 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 121, 90 |
| Conread position: | 257-507 |
| Cow position: | chr5:1498938-1499186 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 161 |
| Conread position: | 260-486 |
| Cow position: | chr5:42820233-42820475 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 272-467 |
| Cow position: | chr5:48135707-48135914 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 274-486 |
| Cow position: | chr5:24888638-24888867 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 208 |
Show alignments to all cow chromosomes.