Cow genome map

Conread name: Pig1-131E01

Conread position: 276-498
Cow position: chr1:102780794-102780576 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 67, 9

Conread position: 276-525
Cow position: chr1:49972631-49972380 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 9

Conread position: 276-525
Cow position: chr1:72082299-72082549 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 9

Conread position: 276-525
Cow position: chr1:81777988-81778239 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 51, 9

Conread position: 282-525
Cow position: chr1:55778134-55778379 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 121

Conread position: 285-517
Cow position: chr1:82654207-82654438 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 194

Conread position: 285-520
Cow position: chr1:21088981-21089219 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 285-520
Cow position: chr1:26584650-26584887 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 116

Conread position: 285-520
Cow position: chr1:59207529-59207291 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-520
Cow position: chr1:71561195-71560957 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-521
Cow position: chr1:20830445-20830683 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 227

Conread position: 285-521
Cow position: chr1:99914991-99915224 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 42, 135

Conread position: 285-524
Cow position: chr1:21116291-21116045 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 64, 90

Conread position: 285-525
Cow position: chr1:3384390-3384146 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 179

Conread position: 285-525
Cow position: chr1:3933707-3933467 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 75

Conread position: 285-525
Cow position: chr1:10724131-10724372 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 24

Conread position: 285-525
Cow position: chr1:17011185-17010945 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 24

Conread position: 285-525
Cow position: chr1:17035044-17034802 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 190

Conread position: 285-525
Cow position: chr1:25053843-25054080 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 42, 200

Conread position: 285-525
Cow position: chr1:29363845-29364088 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 285-525
Cow position: chr1:30074418-30074663 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:32566374-32566138 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 35, 44

Conread position: 285-525
Cow position: chr1:33713621-33713874 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:33852819-33853062 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:33897810-33898053 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:39545337-39545577 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 189

Conread position: 285-525
Cow position: chr1:40056654-40056897 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:40683192-40682949 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:50210292-50210049 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:52357709-52357466 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:56724694-56724938 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:57423282-57423039 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 285-525
Cow position: chr1:62243103-62242860 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:65387862-65388105 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:69404550-69404793 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:69416731-69416502 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 36, 0

Conread position: 285-525
Cow position: chr1:74285129-74284886 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:76619929-76619686 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:76750422-76750179 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:77923258-77923501 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 39

Conread position: 285-525
Cow position: chr1:79455403-79455162 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 42, 211

Conread position: 285-525
Cow position: chr1:79635445-79635206 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 82

Conread position: 285-525
Cow position: chr1:80357620-80357377 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 285-525
Cow position: chr1:81862434-81862190 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 180

Conread position: 285-525
Cow position: chr1:82565663-82565906 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:82922613-82922371 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 203

Conread position: 285-525
Cow position: chr1:85793231-85793475 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:86546587-86546344 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:91891569-91891328 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 285-525
Cow position: chr1:91900572-91900815 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 285-525
Cow position: chr1:93856064-93856305 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 285-525
Cow position: chr1:94661219-94661462 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-525
Cow position: chr1:102433490-102433241 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 42, 216

Conread position: 285-527
Cow position: chr1:24652813-24653059 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 285-527
Cow position: chr1:55275480-55275235 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 123

Conread position: 285-527
Cow position: chr1:56192614-56192369 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 285-527
Cow position: chr1:62804625-62804384 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 164

Conread position: 287-525
Cow position: chr1:88268543-88268305 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 29, 43

Conread position: 287-527
Cow position: chr1:27112880-27112641 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 40, 99

Conread position: 288-525
Cow position: chr1:42737983-42738221 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 132

Conread position: 288-525
Cow position: chr1:67002708-67002946 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 168

Conread position: 288-525
Cow position: chr1:73069505-73069267 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 178
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 39, 114

Conread position: 288-525
Cow position: chr1:82477529-82477769 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 288-527
Cow position: chr1:18240671-18240439 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 186
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 36, 16

Conread position: 289-525
Cow position: chr1:1828756-1828517 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 35, 0

Conread position: 289-525
Cow position: chr1:8826606-8826847 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 291-525
Cow position: chr1:48248459-48248696 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 90

Conread position: 294-508
Cow position: chr1:88387786-88388000 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 33, 93

Conread position: 295-519
Cow position: chr1:30520349-30520576 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 19, 0

Conread position: 295-521
Cow position: chr1:26517329-26517100 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 295-521
Cow position: chr1:40966857-40966628 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 295-525
Cow position: chr1:28874627-28874861 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 295-525
Cow position: chr1:33552489-33552730 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 183
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 32, 0

Conread position: 295-525
Cow position: chr1:57364786-57364550 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 295-525
Cow position: chr1:63604211-63603978 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 295-527
Cow position: chr1:30533464-30533227 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 296-519
Cow position: chr1:56142783-56142556 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 31, 0

Conread position: 297-525
Cow position: chr1:72185318-72185083 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 30, 164

Conread position: 298-516
Cow position: chr1:57972033-57971810 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 50, 30

Conread position: 299-525
Cow position: chr1:57569395-57569623 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 28, 126

Conread position: 302-525
Cow position: chr1:62921126-62921352 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 306-525
Cow position: chr1:102550075-102550288 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 19, 139

Conread position: 312-526
Cow position: chr1:22844061-22844271 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 56

Conread position: 314-525
Cow position: chr1:82911250-82911036 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 15, 0

Conread position: 317-525
Cow position: chr1:72037966-72037761 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 163
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 26, 115

Conread position: 323-525
Cow position: chr1:89482540-89482741 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 153

Conread position: 325-527
Cow position: chr1:27542724-27542931 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 69

Conread position: 328-524
Cow position: chr1:18194105-18194302 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 15, 0

Conread position: 328-525
Cow position: chr1:86611699-86611903 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 135, 18

Conread position: 328-525
Cow position: chr1:101012589-101012391 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 331-493
Cow position: chr1:86508297-86508134 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 12, 105

Conread position: 332-525
Cow position: chr1:34683492-34683691 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 52

Conread position: 332-527
Cow position: chr1:57696353-57696157 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 34

Conread position: 340-524
Cow position: chr1:19184713-19184523 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 98, 0

Conread position: 342-525
Cow position: chr1:98617179-98616996 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 146
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 355-525
Cow position: chr1:5355313-5355143 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 361-525
Cow position: chr1:38476937-38477101 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 67, 74

Conread position: 361-525
Cow position: chr1:72985082-72985242 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 371-525
Cow position: chr1:21996376-21996223 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 108, 43

Conread position: 390-524
Cow position: chr1:67287996-67288130 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.