Cow genome map
| Conread name: | Pig1-131E01 |
| Conread position: | 29-250 |
| Cow position: | chr11:12119298-12119073 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 47 |
| Conread position: | 39-249 |
| Cow position: | chr11:54126462-54126687 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 276-525 |
| Cow position: | chr11:58135598-58135843 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 282-525 |
| Cow position: | chr11:27657636-27657892 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 285-509 |
| Cow position: | chr11:1488960-1488733 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 285-517 |
| Cow position: | chr11:17106470-17106235 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-519 |
| Cow position: | chr11:17281269-17281030 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 285-519 |
| Cow position: | chr11:27668783-27668546 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-520 |
| Cow position: | chr11:75553798-75553566 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 100 |
| Conread position: | 285-521 |
| Cow position: | chr11:23249258-23249019 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 285-524 |
| Cow position: | chr11:43513413-43513175 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 42, 149 |
| Conread position: | 285-525 |
| Cow position: | chr11:4026400-4026157 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr11:9733469-9733228 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 285-525 |
| Cow position: | chr11:12357190-12356947 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr11:15986463-15986697 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 285-525 |
| Cow position: | chr11:17547369-17547612 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr11:19062865-19062622 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr11:23881239-23881476 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 42, 101 |
| Conread position: | 285-525 |
| Cow position: | chr11:24394526-24394768 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 285-525 |
| Cow position: | chr11:26069830-26069591 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 201 |
| Conread position: | 285-525 |
| Cow position: | chr11:26123715-26123464 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 42, 174 |
| Conread position: | 285-525 |
| Cow position: | chr11:28228556-28228313 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr11:32079576-32079333 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr11:44582131-44581888 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr11:47738328-47738093 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 285-525 |
| Cow position: | chr11:50836456-50836213 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 285-525 |
| Cow position: | chr11:63654122-63653878 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr11:67451704-67451947 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr11:72309826-72309585 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 285-525 |
| Cow position: | chr11:85392622-85392379 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr11:86876672-86876429 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-526 |
| Cow position: | chr11:63647273-63647517 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 285-527 |
| Cow position: | chr11:11590179-11590423 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 123 |
| Conread position: | 285-527 |
| Cow position: | chr11:29667386-29667138 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 42, 157 |
| Conread position: | 285-527 |
| Cow position: | chr11:87142793-87143038 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 286-525 |
| Cow position: | chr11:67154891-67155132 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 148 |
| Conread position: | 287-520 |
| Cow position: | chr11:25393401-25393638 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 287-525 |
| Cow position: | chr11:49238745-49238502 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 38, 204 |
| Conread position: | 287-525 |
| Cow position: | chr11:53285959-53285718 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 287-527 |
| Cow position: | chr11:37802278-37802519 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 288-498 |
| Cow position: | chr11:10848667-10848878 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 288-521 |
| Cow position: | chr11:17119129-17118891 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 151 |
| Conread position: | 288-524 |
| Cow position: | chr11:7117626-7117865 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 150 |
| Conread position: | 288-525 |
| Cow position: | chr11:4055115-4054882 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 36, 163 |
| Conread position: | 288-525 |
| Cow position: | chr11:30253443-30253678 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 288-525 |
| Cow position: | chr11:61399890-61399650 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 36 |
| Conread position: | 288-527 |
| Cow position: | chr11:41169481-41169236 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 150 |
| Conread position: | 289-525 |
| Cow position: | chr11:35894689-35894452 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 35, 45 |
| Conread position: | 291-524 |
| Cow position: | chr11:4062689-4062458 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 291-525 |
| Cow position: | chr11:10056715-10056954 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 7, 197 |
| Conread position: | 294-525 |
| Cow position: | chr11:47759061-47758824 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 131 |
| Conread position: | 294-525 |
| Cow position: | chr11:52420611-52420846 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 295-525 |
| Cow position: | chr11:4268959-4268723 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 295-525 |
| Cow position: | chr11:38834226-38833993 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 296-521 |
| Cow position: | chr11:26548752-26548976 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 31, 76 |
| Conread position: | 296-525 |
| Cow position: | chr11:10957041-10957270 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 331-525 |
| Cow position: | chr11:40405793-40405598 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 337-525 |
| Cow position: | chr11:44253344-44253527 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 342-525 |
| Cow position: | chr11:44041979-44042162 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 352-525 |
| Cow position: | chr11:12318745-12318572 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 361-525 |
| Cow position: | chr11:76372732-76372577 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 31, 80 |
| Conread position: | 373-525 |
| Cow position: | chr11:42371115-42371267 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-525 |
| Cow position: | chr11:32479512-32479364 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 385-525 |
| Cow position: | chr11:28713637-28713778 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
Show alignments to all cow chromosomes.