Cow genome map
| Conread name: | Pig1-131E01 |
| Conread position: | 276-525 |
| Cow position: | chr17:136006-136255 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 67, 9 |
| Conread position: | 285-524 |
| Cow position: | chr17:6261243-6261485 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-524 |
| Cow position: | chr17:28027120-28026881 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 202 |
| Conread position: | 285-525 |
| Cow position: | chr17:39824-40067 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr17:3640521-3640278 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr17:3654905-3654662 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 285-525 |
| Cow position: | chr17:4061488-4061736 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 285-525 |
| Cow position: | chr17:6069927-6070170 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr17:9751088-9751333 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 39 |
| Conread position: | 285-525 |
| Cow position: | chr17:11086343-11086100 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 153 |
| Conread position: | 285-525 |
| Cow position: | chr17:11784242-11784494 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr17:13967311-13967553 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 285-525 |
| Cow position: | chr17:14215642-14215421 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 285-525 |
| Cow position: | chr17:14240889-14241131 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 192 |
| Conread position: | 285-525 |
| Cow position: | chr17:19267450-19267218 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 111, 42 |
| Conread position: | 285-525 |
| Cow position: | chr17:20080497-20080269 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 39, 98 |
| Conread position: | 285-525 |
| Cow position: | chr17:20086389-20086149 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 285-525 |
| Cow position: | chr17:20489697-20489931 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 285-525 |
| Cow position: | chr17:23323064-23322821 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr17:24028620-24028375 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr17:34157506-34157748 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 229 |
| Conread position: | 285-525 |
| Cow position: | chr17:39049599-39049844 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 285-525 |
| Cow position: | chr17:43989886-43990129 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 175 |
| Conread position: | 285-526 |
| Cow position: | chr17:251520-251772 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 142 |
| Conread position: | 285-527 |
| Cow position: | chr17:19608818-19608575 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 286-492 |
| Cow position: | chr17:22133650-22133861 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 288-519 |
| Cow position: | chr17:29302143-29302378 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 288-524 |
| Cow position: | chr17:21418941-21419180 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 288-525 |
| Cow position: | chr17:15852080-15852320 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 288-525 |
| Cow position: | chr17:20099089-20098854 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 289-524 |
| Cow position: | chr17:4083407-4083640 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 35, 131 |
| Conread position: | 289-525 |
| Cow position: | chr17:17257302-17257063 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 289-525 |
| Cow position: | chr17:42267050-42267283 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 289-526 |
| Cow position: | chr17:5228009-5228249 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 9, 94 |
| Conread position: | 289-527 |
| Cow position: | chr17:8203323-8203565 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 290-525 |
| Cow position: | chr17:1786575-1786343 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 290-525 |
| Cow position: | chr17:2077605-2077365 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 22, 150 |
| Conread position: | 291-520 |
| Cow position: | chr17:24335951-24336175 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 294-460 |
| Cow position: | chr17:1704264-1704433 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 294-525 |
| Cow position: | chr17:2246693-2246459 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 295-527 |
| Cow position: | chr17:20403814-20404045 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 32, 151 |
| Conread position: | 311-525 |
| Cow position: | chr17:2554865-2554648 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 319-525 |
| Cow position: | chr17:20415039-20414833 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 328-525 |
| Cow position: | chr17:4346150-4345952 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 328-525 |
| Cow position: | chr17:19980707-19980509 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 333-525 |
| Cow position: | chr17:1881700-1881892 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 10, 140 |
| Conread position: | 354-525 |
| Cow position: | chr17:22561353-22561523 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 354-525 |
| Cow position: | chr17:34159183-34159353 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 361-517 |
| Cow position: | chr17:20231281-20231437 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 361-525 |
| Cow position: | chr17:16121144-16120979 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 138 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 364-526 |
| Cow position: | chr17:33284222-33284064 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 367-525 |
| Cow position: | chr17:45271650-45271492 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-522 |
| Cow position: | chr17:53598-53454 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 390-527 |
| Cow position: | chr17:2175412-2175549 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 401-525 |
| Cow position: | chr17:34574246-34574370 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.