Cow genome map
| Conread name: | Pig1-132A16a |
| Conread position: | 1-146 |
| Cow position: | chr19:39339702-39339559 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 1-156 |
| Cow position: | chr19:3221478-3221632 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1-177 |
| Cow position: | chr19:40884158-40883982 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 164 |
| Conread position: | 1-303 |
| Cow position: | chr19:28450188-28450467 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-316 |
| Cow position: | chr19:36189064-36189362 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 1-317 |
| Cow position: | chr19:14528196-14528495 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 231, 102 |
| Conread position: | 1-341 |
| Cow position: | chr19:435972-435647 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 138 |
| Conread position: | 1-356 |
| Cow position: | chr19:39696850-39697178 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 1-387 |
| Cow position: | chr19:55217171-55217539 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 61, 57 |
| Conread position: | 1-414 |
| Cow position: | chr19:42580948-42580561 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 363, 57 |
| Conread position: | 1-415 |
| Cow position: | chr19:14180634-14180235 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 63 |
| Conread position: | 1-417 |
| Cow position: | chr19:40016222-40015825 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 37 |
| Conread position: | 1-417 |
| Cow position: | chr19:40849123-40848722 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 155 |
| Conread position: | 1-418 |
| Cow position: | chr19:164769-164380 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 290 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 44, 145 |
| Conread position: | 2-260 |
| Cow position: | chr19:45464501-45464742 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 2-395 |
| Cow position: | chr19:35781243-35781620 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 137 |
| Conread position: | 2-417 |
| Cow position: | chr19:3086160-3086557 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 73 |
| Conread position: | 2-417 |
| Cow position: | chr19:37844414-37844010 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 19 |
| Conread position: | 4-402 |
| Cow position: | chr19:542251-541881 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 41 |
| Conread position: | 4-418 |
| Cow position: | chr19:12209564-12209162 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 138 |
| Conread position: | 6-133 |
| Cow position: | chr19:5026821-5026694 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-154 |
| Cow position: | chr19:9118181-9118329 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-171 |
| Cow position: | chr19:1293721-1293885 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 6-177 |
| Cow position: | chr19:21337534-21337364 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 6-178 |
| Cow position: | chr19:55843375-55843545 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 147, 57 |
| Conread position: | 6-312 |
| Cow position: | chr19:39394572-39394861 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 253, 150 |
| Conread position: | 6-316 |
| Cow position: | chr19:8273702-8273405 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 267, 157 |
| Conread position: | 6-338 |
| Cow position: | chr19:6475-6785 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 145, 65 |
| Conread position: | 6-343 |
| Cow position: | chr19:31781940-31782261 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 134 |
| Conread position: | 6-346 |
| Cow position: | chr19:4388951-4389268 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 132 |
| Conread position: | 6-361 |
| Cow position: | chr19:5902398-5902737 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 133 |
| Conread position: | 6-389 |
| Cow position: | chr19:16316836-16316482 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 51 |
| Conread position: | 6-404 |
| Cow position: | chr19:52148055-52147674 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-414 |
| Cow position: | chr19:48534101-48534486 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 90 |
| Conread position: | 6-415 |
| Cow position: | chr19:776884-777282 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 17 |
| Conread position: | 6-415 |
| Cow position: | chr19:30237081-30237470 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 106 |
| Conread position: | 6-417 |
| Cow position: | chr19:41704-42104 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 133 |
| Conread position: | 6-417 |
| Cow position: | chr19:930190-930587 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 133 |
| Conread position: | 6-417 |
| Cow position: | chr19:8206638-8206251 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 62 |
| Conread position: | 6-417 |
| Cow position: | chr19:15796795-15797188 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 150 |
| Conread position: | 6-417 |
| Cow position: | chr19:22512616-22513009 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 33 |
| Conread position: | 6-417 |
| Cow position: | chr19:23488130-23488524 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-417 |
| Cow position: | chr19:24734514-24734905 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 47 |
| Conread position: | 6-417 |
| Cow position: | chr19:26518960-26518568 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-417 |
| Cow position: | chr19:27082044-27081646 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-417 |
| Cow position: | chr19:28576027-28575636 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 145 |
| Conread position: | 6-417 |
| Cow position: | chr19:29366899-29367296 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-417 |
| Cow position: | chr19:29624407-29624803 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-417 |
| Cow position: | chr19:34905954-34905557 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-417 |
| Cow position: | chr19:36351640-36352036 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 66 |
| Conread position: | 6-417 |
| Cow position: | chr19:39182169-39181767 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 157 |
| Conread position: | 6-417 |
| Cow position: | chr19:55164286-55163889 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 133 |
| Conread position: | 6-418 |
| Cow position: | chr19:5732866-5733260 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 150 |
| Conread position: | 10-417 |
| Cow position: | chr19:54542617-54542226 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 34 |
| Conread position: | 23-415 |
| Cow position: | chr19:12601316-12600938 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 125 |
| Conread position: | 24-408 |
| Cow position: | chr19:47188694-47188346 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 25-417 |
| Cow position: | chr19:5044308-5043931 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 121 |
| Conread position: | 29-402 |
| Cow position: | chr19:46821247-46821598 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 9 |
| Conread position: | 30-413 |
| Cow position: | chr19:39076841-39077197 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 207, 38 |
| Conread position: | 55-413 |
| Cow position: | chr19:42241201-42240857 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 48 |
| Conread position: | 58-417 |
| Cow position: | chr19:39923759-39924103 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 72-414 |
| Cow position: | chr19:15843039-15842706 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 249 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 79-415 |
| Cow position: | chr19:26976870-26976564 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 285, 65 |
| Conread position: | 82-417 |
| Cow position: | chr19:23382886-23383207 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 57 |
| Conread position: | 151-399 |
| Cow position: | chr19:31762641-31762395 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 80, 147 |
| Conread position: | 169-355 |
| Cow position: | chr19:736230-736045 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 169-389 |
| Cow position: | chr19:29071522-29071312 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 121 |
| Conread position: | 169-415 |
| Cow position: | chr19:35363041-35362793 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 140 |
| Conread position: | 169-417 |
| Cow position: | chr19:2065125-2065373 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 49, 101 |
| Conread position: | 169-417 |
| Cow position: | chr19:12776759-12777009 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 140 |
| Conread position: | 169-417 |
| Cow position: | chr19:32617846-32618086 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 195, 117 |
| Conread position: | 169-420 |
| Cow position: | chr19:20107901-20108151 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 193, 77 |
| Conread position: | 174-417 |
| Cow position: | chr19:32456832-32457078 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 201 |
| Conread position: | 174-417 |
| Cow position: | chr19:55843517-55843762 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 135 |
| Conread position: | 175-418 |
| Cow position: | chr19:12614326-12614079 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 49, 141 |
| Conread position: | 181-394 |
| Cow position: | chr19:35289025-35288818 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 183, 128 |
| Conread position: | 181-418 |
| Cow position: | chr19:158658-158420 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 135, 49 |
| Conread position: | 182-417 |
| Cow position: | chr19:35143126-35142888 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 64, 118 |
Show alignments to all cow chromosomes.