Cow genome map

Conread name: Pig1-132A16a

Conread position: 1-177
Cow position: chr24:6524349-6524523 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 92, 0

Conread position: 1-263
Cow position: chr24:36721796-36722059 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 128, 163

Conread position: 1-341
Cow position: chr24:33937281-33937603 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 1-346
Cow position: chr24:36710191-36710518 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 1-398
Cow position: chr24:31356948-31357317 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 44

Conread position: 1-402
Cow position: chr24:5863003-5862618 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 139

Conread position: 1-402
Cow position: chr24:31302046-31302421 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 39

Conread position: 1-402
Cow position: chr24:38813996-38814378 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 146

Conread position: 1-407
Cow position: chr24:9071491-9071106 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 41

Conread position: 1-414
Cow position: chr24:18267134-18266742 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 96

Conread position: 1-417
Cow position: chr24:13374163-13373754 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 139

Conread position: 1-417
Cow position: chr24:14760245-14760653 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 162

Conread position: 1-417
Cow position: chr24:32608663-32609062 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 144

Conread position: 1-417
Cow position: chr24:34760861-34761263 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 144

Conread position: 1-417
Cow position: chr24:45086875-45087278 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 38

Conread position: 1-418
Cow position: chr24:5910171-5910573 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 131

Conread position: 1-418
Cow position: chr24:17566196-17566600 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 149

Conread position: 2-370
Cow position: chr24:36036474-36036117 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 94

Conread position: 2-379
Cow position: chr24:15667395-15667040 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 89

Conread position: 4-154
Cow position: chr24:17365619-17365474 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 4-417
Cow position: chr24:12147232-12146836 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 55

Conread position: 6-154
Cow position: chr24:25698301-25698443 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 6-286
Cow position: chr24:14146812-14146547 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 146, 0

Conread position: 6-341
Cow position: chr24:16558923-16558615 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 90, 0

Conread position: 6-350
Cow position: chr24:18223124-18222795 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 6-369
Cow position: chr24:36779628-36779964 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 124

Conread position: 6-395
Cow position: chr24:35823848-35823477 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 158

Conread position: 6-411
Cow position: chr24:31067688-31067304 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-415
Cow position: chr24:20283855-20283460 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 150

Conread position: 6-415
Cow position: chr24:36028158-36027763 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr24:3162827-3163224 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr24:3793839-3794236 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr24:3850952-3851349 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr24:5929136-5929532 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr24:5990830-5990434 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr24:6067986-6067593 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 84

Conread position: 6-417
Cow position: chr24:6326016-6325618 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 134

Conread position: 6-417
Cow position: chr24:6412835-6413232 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-417
Cow position: chr24:11940118-11940515 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-417
Cow position: chr24:12090337-12090729 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr24:12332350-12331953 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 34

Conread position: 6-417
Cow position: chr24:12696766-12696370 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 98

Conread position: 6-417
Cow position: chr24:14250226-14249829 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 38

Conread position: 6-417
Cow position: chr24:15296472-15296869 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr24:16081130-16080731 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 150

Conread position: 6-417
Cow position: chr24:17161621-17161224 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr24:17188917-17188519 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 132

Conread position: 6-417
Cow position: chr24:18112812-18113209 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr24:22047712-22047320 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 133

Conread position: 6-417
Cow position: chr24:26412404-26412800 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 132

Conread position: 6-417
Cow position: chr24:29084309-29083911 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 135

Conread position: 6-417
Cow position: chr24:33640141-33639744 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr24:36268448-36268052 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 84

Conread position: 6-417
Cow position: chr24:36307937-36308330 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr24:39067512-39067114 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 134

Conread position: 6-417
Cow position: chr24:40467056-40466659 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 146

Conread position: 6-417
Cow position: chr24:41671215-41671606 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 291
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 242, 161

Conread position: 6-425
Cow position: chr24:22794916-22795318 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 42

Conread position: 8-414
Cow position: chr24:6442797-6443187 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 131

Conread position: 10-343
Cow position: chr24:13191523-13191837 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 10-415
Cow position: chr24:13235627-13236018 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 93

Conread position: 10-417
Cow position: chr24:11081419-11081029 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 129

Conread position: 10-417
Cow position: chr24:12446855-12447245 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 129

Conread position: 10-417
Cow position: chr24:22975169-22975563 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 40

Conread position: 10-417
Cow position: chr24:23052526-23052133 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 131

Conread position: 14-415
Cow position: chr24:10244194-10243810 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 26

Conread position: 18-154
Cow position: chr24:9088750-9088615 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 11, 41

Conread position: 19-417
Cow position: chr24:6340073-6340457 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 345, 124

Conread position: 29-415
Cow position: chr24:32823742-32823382 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 115

Conread position: 30-402
Cow position: chr24:12203136-12202781 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 259
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 11, 87

Conread position: 34-417
Cow position: chr24:12198971-12198602 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 101

Conread position: 57-397
Cow position: chr24:15880546-15880865 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 305, 82

Conread position: 69-414
Cow position: chr24:31370868-31370542 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 70

Conread position: 88-418
Cow position: chr24:33239440-33239128 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 57

Conread position: 108-415
Cow position: chr24:7749063-7749373 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 31

Conread position: 154-417
Cow position: chr24:12293181-12293446 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 155

Conread position: 164-417
Cow position: chr24:34270691-34270942 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 198, 145

Conread position: 167-418
Cow position: chr24:19466758-19466506 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 126

Conread position: 169-400
Cow position: chr24:28601535-28601311 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 57, 0

Conread position: 169-417
Cow position: chr24:11748605-11748356 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 85

Conread position: 169-418
Cow position: chr24:33229833-33230092 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 54, 151

Conread position: 170-415
Cow position: chr24:11839359-11839606 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 67, 120

Conread position: 173-370
Cow position: chr24:26388401-26388204 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 189, 136

Conread position: 173-414
Cow position: chr24:40129142-40129394 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 191, 44

Conread position: 174-399
Cow position: chr24:29155271-29155481 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 190, 57

Conread position: 174-417
Cow position: chr24:17720911-17720666 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 127

Conread position: 174-417
Cow position: chr24:19706747-19706987 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 188
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 78, 61

Show alignments to all cow chromosomes.