Cow genome map

Conread name: Pig1-132A16a

Conread position: 1-151
Cow position: chr29:29549798-29549947 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 66, 72

Conread position: 1-162
Cow position: chr29:13849668-13849504 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 147, 71

Conread position: 1-171
Cow position: chr29:36634072-36633913 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 39, 0

Conread position: 1-286
Cow position: chr29:5961280-5961549 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 208
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 138, 0

Conread position: 1-328
Cow position: chr29:10297585-10297278 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 235
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 108, 0

Conread position: 1-341
Cow position: chr29:960478-960798 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 159

Conread position: 1-360
Cow position: chr29:19761337-19761677 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 23

Conread position: 1-395
Cow position: chr29:22279650-22280026 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 39

Conread position: 1-402
Cow position: chr29:14116094-14116472 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 75

Conread position: 1-413
Cow position: chr29:10644137-10643740 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 71

Conread position: 1-414
Cow position: chr29:1742781-1743175 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 71

Conread position: 1-414
Cow position: chr29:26290027-26289640 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 287
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 358, 32

Conread position: 1-415
Cow position: chr29:30432916-30432518 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 55

Conread position: 1-415
Cow position: chr29:32800552-32800945 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 33

Conread position: 1-417
Cow position: chr29:9079520-9079125 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 143

Conread position: 1-417
Cow position: chr29:9639252-9638859 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 143

Conread position: 1-417
Cow position: chr29:10452539-10452140 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 138

Conread position: 1-417
Cow position: chr29:15943629-15944019 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 41

Conread position: 1-418
Cow position: chr29:32289662-32290069 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 37

Conread position: 1-423
Cow position: chr29:45651265-45650866 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 74

Conread position: 2-286
Cow position: chr29:4200656-4200935 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 2-417
Cow position: chr29:2745225-2744825 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 14

Conread position: 2-417
Cow position: chr29:32352873-32353274 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 161

Conread position: 2-425
Cow position: chr29:27007163-27007580 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 128

Conread position: 3-94
Cow position: chr29:21325881-21325790 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 82
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 6-154
Cow position: chr29:16101836-16101688 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 6-340
Cow position: chr29:2307282-2307599 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 145

Conread position: 6-341
Cow position: chr29:39076437-39076119 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 6-341
Cow position: chr29:43326796-43327115 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 133

Conread position: 6-346
Cow position: chr29:2838054-2837731 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 6-358
Cow position: chr29:35273757-35273421 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 150

Conread position: 6-391
Cow position: chr29:45182-44819 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 129

Conread position: 6-393
Cow position: chr29:43692025-43692392 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 42

Conread position: 6-397
Cow position: chr29:40618573-40618199 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-401
Cow position: chr29:43729123-43729497 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 66

Conread position: 6-415
Cow position: chr29:26161551-26161153 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 28

Conread position: 6-417
Cow position: chr29:1478733-1479130 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr29:2401970-2402365 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 74

Conread position: 6-417
Cow position: chr29:5240678-5241074 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 109

Conread position: 6-417
Cow position: chr29:5785776-5786174 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr29:7427860-7427462 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 124

Conread position: 6-417
Cow position: chr29:7811915-7811518 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 134

Conread position: 6-417
Cow position: chr29:7847674-7848070 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr29:10032372-10031974 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr29:14208285-14207889 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 85

Conread position: 6-417
Cow position: chr29:14313867-14313470 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 66

Conread position: 6-417
Cow position: chr29:16064992-16065388 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr29:16347481-16347890 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 85

Conread position: 6-417
Cow position: chr29:19515063-19514660 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 146

Conread position: 6-417
Cow position: chr29:19524857-19524462 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr29:19619987-19619590 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 151

Conread position: 6-417
Cow position: chr29:28657086-28656694 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 133

Conread position: 6-417
Cow position: chr29:32543420-32543817 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 116

Conread position: 6-417
Cow position: chr29:34794581-34794179 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 137

Conread position: 6-417
Cow position: chr29:35076406-35076809 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 150

Conread position: 6-417
Cow position: chr29:38229289-38229679 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-417
Cow position: chr29:38350078-38349683 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 48

Conread position: 6-417
Cow position: chr29:38409479-38409875 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr29:42255696-42255300 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr29:42807268-42807659 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 395, 90

Conread position: 6-418
Cow position: chr29:21474431-21474829 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-418
Cow position: chr29:40498594-40498200 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 132

Conread position: 7-177
Cow position: chr29:40954612-40954442 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 7-294
Cow position: chr29:35002391-35002120 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 149, 0

Conread position: 7-417
Cow position: chr29:19657164-19657560 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 132

Conread position: 8-417
Cow position: chr29:27814076-27814454 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 41

Conread position: 10-177
Cow position: chr29:13099457-13099624 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 154

Conread position: 10-417
Cow position: chr29:19397946-19398338 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 129

Conread position: 11-381
Cow position: chr29:27630641-27630303 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 263
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 353, 52

Conread position: 11-417
Cow position: chr29:20254451-20254842 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 145

Conread position: 12-417
Cow position: chr29:8623920-8623556 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 290
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 387, 118

Conread position: 15-402
Cow position: chr29:87924-87555 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 24

Conread position: 27-414
Cow position: chr29:43964258-43963879 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 269
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 12, 107

Conread position: 30-406
Cow position: chr29:32807668-32808022 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 29

Conread position: 35-417
Cow position: chr29:31094251-31093883 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 104

Conread position: 39-417
Cow position: chr29:29566026-29565660 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 100

Conread position: 41-321
Cow position: chr29:13128714-13128977 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 98, 0

Conread position: 42-417
Cow position: chr29:18879592-18879220 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 7

Conread position: 55-416
Cow position: chr29:4119953-4120300 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 90

Conread position: 57-418
Cow position: chr29:7666923-7666583 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 88

Conread position: 64-415
Cow position: chr29:9332222-9332593 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 266

Conread position: 73-417
Cow position: chr29:24420551-24420871 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 252
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 330, 49

Conread position: 73-417
Cow position: chr29:41183832-41183503 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 66

Conread position: 74-402
Cow position: chr29:13590593-13590282 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 65

Conread position: 82-417
Cow position: chr29:35433996-35434316 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 239
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 282, 63

Conread position: 148-417
Cow position: chr29:407095-406816 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 76, 63

Conread position: 166-416
Cow position: chr29:31785901-31786149 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 43, 65

Conread position: 169-341
Cow position: chr29:15694023-15693852 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 130, 0

Conread position: 169-402
Cow position: chr29:30270424-30270187 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 181, 134

Conread position: 172-372
Cow position: chr29:14051218-14051022 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 9, 55

Conread position: 174-415
Cow position: chr29:35291097-35291332 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 190, 129

Conread position: 174-420
Cow position: chr29:29056392-29056630 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 111, 52

Conread position: 176-415
Cow position: chr29:8667022-8667257 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 188, 57

Show alignments to all cow chromosomes.