Cow genome map

Conread name: Pig1-132A16a

Conread position: 1-111
Cow position: chr6:58016584-58016694 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 94
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-128
Cow position: chr6:25357626-25357505 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 32, 0

Conread position: 1-130
Cow position: chr6:65860609-65860738 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-137
Cow position: chr6:12099746-12099875 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 114
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 1-154
Cow position: chr6:16766605-16766454 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 0

Conread position: 1-154
Cow position: chr6:45736633-45736480 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-154
Cow position: chr6:46633354-46633506 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 127
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 57, 0

Conread position: 1-154
Cow position: chr6:58605763-58605915 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 128
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 149, 39

Conread position: 1-171
Cow position: chr6:17556438-17556269 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 158, 0

Conread position: 1-178
Cow position: chr6:6182478-6182306 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 150, 33

Conread position: 1-216
Cow position: chr6:1109243-1109442 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 152, 0

Conread position: 1-285
Cow position: chr6:7105297-7105027 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 253, 121

Conread position: 1-321
Cow position: chr6:21588219-21588520 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 0

Conread position: 1-331
Cow position: chr6:57383651-57383966 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 204
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 172, 129

Conread position: 1-341
Cow position: chr6:11638971-11638650 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 54

Conread position: 1-341
Cow position: chr6:53935399-53935046 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 267
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 150, 33

Conread position: 1-402
Cow position: chr6:5096570-5096215 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 44

Conread position: 1-402
Cow position: chr6:39136739-39137110 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 108

Conread position: 1-413
Cow position: chr6:11193352-11192947 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 37

Conread position: 1-414
Cow position: chr6:706233-706629 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 398, 162

Conread position: 1-415
Cow position: chr6:33300900-33301304 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 147

Conread position: 1-415
Cow position: chr6:43797666-43797264 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 155

Conread position: 1-415
Cow position: chr6:51674007-51674401 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 57

Conread position: 1-415
Cow position: chr6:53672568-53672977 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 141

Conread position: 1-417
Cow position: chr6:3152453-3152849 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 38

Conread position: 1-417
Cow position: chr6:4467858-4468251 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 143

Conread position: 1-417
Cow position: chr6:6471700-6471282 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 67

Conread position: 1-417
Cow position: chr6:9738019-9737627 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 106

Conread position: 1-417
Cow position: chr6:12352076-12352477 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 76

Conread position: 1-417
Cow position: chr6:15276005-15275603 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 155

Conread position: 1-417
Cow position: chr6:16410291-16410691 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 17

Conread position: 1-417
Cow position: chr6:21832426-21832024 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 139

Conread position: 1-417
Cow position: chr6:34075102-34075507 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 115

Conread position: 1-418
Cow position: chr6:6119754-6119367 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 21

Conread position: 1-420
Cow position: chr6:17344433-17344835 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 149

Conread position: 1-425
Cow position: chr6:10694957-10695360 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 402, 113

Conread position: 2-149
Cow position: chr6:59619311-59619459 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 8, 0

Conread position: 2-178
Cow position: chr6:1274611-1274434 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 94, 38

Conread position: 2-341
Cow position: chr6:28102633-28102314 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 112

Conread position: 2-394
Cow position: chr6:10681226-10681594 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 37

Conread position: 2-417
Cow position: chr6:46764170-46763769 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 137

Conread position: 3-146
Cow position: chr6:14851510-14851370 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 3-150
Cow position: chr6:28481565-28481712 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 121
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 3-154
Cow position: chr6:30269665-30269514 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 3-417
Cow position: chr6:51876997-51877392 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 40

Conread position: 4-339
Cow position: chr6:43187347-43187669 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 159

Conread position: 4-417
Cow position: chr6:12926812-12927205 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 48

Conread position: 4-418
Cow position: chr6:5946537-5946137 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 159

Conread position: 5-417
Cow position: chr6:62333510-62333113 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 134

Conread position: 6-134
Cow position: chr6:24126357-24126228 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 36, 126

Conread position: 6-136
Cow position: chr6:68030419-68030549 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 6-172
Cow position: chr6:2111159-2110995 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 34, 0

Conread position: 6-177
Cow position: chr6:27526723-27526556 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 129, 0

Conread position: 6-178
Cow position: chr6:12663075-12662902 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 152, 0

Conread position: 6-178
Cow position: chr6:46225722-46225545 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 144, 0

Conread position: 6-252
Cow position: chr6:32664862-32664631 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 180
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 221, 133

Conread position: 6-299
Cow position: chr6:50485544-50485251 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 116
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 6-321
Cow position: chr6:55593310-55593608 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 6-341
Cow position: chr6:1536945-1537252 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 0

Conread position: 6-341
Cow position: chr6:56925973-56926291 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 6-341
Cow position: chr6:60332583-60332903 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 151

Conread position: 6-341
Cow position: chr6:64719558-64719873 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 6-346
Cow position: chr6:41231728-41232045 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 241
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 85, 0

Conread position: 6-410
Cow position: chr6:2186542-2186152 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 133

Conread position: 6-413
Cow position: chr6:53543243-53542852 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-414
Cow position: chr6:16050053-16049662 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 148

Conread position: 6-414
Cow position: chr6:26324960-26324566 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-414
Cow position: chr6:45666690-45666304 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 144

Conread position: 6-415
Cow position: chr6:328123-327728 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 134

Conread position: 6-415
Cow position: chr6:1796865-1797260 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 133

Conread position: 6-415
Cow position: chr6:24242527-24242921 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 133

Conread position: 6-415
Cow position: chr6:39912562-39912957 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-415
Cow position: chr6:51733321-51733716 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 150

Conread position: 6-415
Cow position: chr6:55539031-55538640 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 129

Conread position: 6-415
Cow position: chr6:58031017-58031406 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-416
Cow position: chr6:17049613-17050010 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 150

Conread position: 6-417
Cow position: chr6:478790-479183 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 158

Conread position: 6-417
Cow position: chr6:2875794-2875399 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 133

Conread position: 6-417
Cow position: chr6:3485179-3484783 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 150

Conread position: 6-417
Cow position: chr6:3886265-3885870 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 150

Conread position: 6-417
Cow position: chr6:7467410-7467014 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 58

Conread position: 6-417
Cow position: chr6:11389374-11388977 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr6:11869694-11869299 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 108

Conread position: 6-417
Cow position: chr6:12997661-12998053 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 45

Conread position: 6-417
Cow position: chr6:14928699-14929081 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 62

Conread position: 6-417
Cow position: chr6:15137933-15137536 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-417
Cow position: chr6:16593190-16593585 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 90

Conread position: 6-417
Cow position: chr6:18803819-18803422 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 158

Conread position: 6-417
Cow position: chr6:19103668-19103271 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr6:20451200-20451595 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 85

Conread position: 6-417
Cow position: chr6:22043768-22043373 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 32

Conread position: 6-417
Cow position: chr6:23568353-23567971 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 129

Conread position: 6-417
Cow position: chr6:26667784-26667388 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 129

Conread position: 6-417
Cow position: chr6:28001156-28000759 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr6:28065231-28065626 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 32

Conread position: 6-417
Cow position: chr6:34405541-34405964 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 313

Conread position: 6-417
Cow position: chr6:34504281-34503887 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 150

Conread position: 6-417
Cow position: chr6:34843473-34843054 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 157

Conread position: 6-417
Cow position: chr6:35873489-35873098 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 105

Conread position: 6-417
Cow position: chr6:36531514-36531912 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 133

Conread position: 6-417
Cow position: chr6:37387806-37388203 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr6:44017588-44017191 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 133

Conread position: 6-417
Cow position: chr6:44146707-44146314 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 117

Conread position: 6-417
Cow position: chr6:47039970-47039574 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 107

Conread position: 6-417
Cow position: chr6:50571431-50571828 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-417
Cow position: chr6:51150182-51150579 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr6:55903329-55903726 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 157

Conread position: 6-417
Cow position: chr6:60876536-60876932 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 128

Conread position: 6-417
Cow position: chr6:62665015-62665412 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 7-374
Cow position: chr6:25408448-25408112 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 36

Conread position: 7-382
Cow position: chr6:27475647-27476015 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 127

Conread position: 8-417
Cow position: chr6:40813609-40813998 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 55

Conread position: 10-346
Cow position: chr6:48873080-48872764 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 0

Conread position: 10-417
Cow position: chr6:1245677-1245284 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 129

Conread position: 10-417
Cow position: chr6:7448739-7449132 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 129

Conread position: 10-417
Cow position: chr6:19059522-19059910 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 57

Conread position: 10-417
Cow position: chr6:27094343-27093950 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 129

Conread position: 10-417
Cow position: chr6:43790124-43789731 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 129

Conread position: 10-417
Cow position: chr6:55238934-55239327 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 128

Conread position: 10-417
Cow position: chr6:67553476-67553869 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 129

Conread position: 11-417
Cow position: chr6:8205432-8205824 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 145

Conread position: 11-417
Cow position: chr6:10266882-10266495 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 134

Conread position: 11-417
Cow position: chr6:33466203-33466592 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 61

Conread position: 19-417
Cow position: chr6:33922152-33921764 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 101

Conread position: 23-417
Cow position: chr6:19712988-19712608 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 116

Conread position: 24-317
Cow position: chr6:32018857-32018570 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 80

Conread position: 28-417
Cow position: chr6:27173102-27173478 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 112

Conread position: 38-418
Cow position: chr6:14199317-14199679 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 107

Conread position: 39-408
Cow position: chr6:39092890-39093245 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 100

Conread position: 40-417
Cow position: chr6:6613570-6613928 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 115

Conread position: 41-417
Cow position: chr6:47539654-47540011 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 98

Conread position: 44-417
Cow position: chr6:8535516-8535162 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 52

Conread position: 48-415
Cow position: chr6:2606747-2607089 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 59

Conread position: 50-418
Cow position: chr6:58915052-58914703 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 314, 89

Conread position: 72-346
Cow position: chr6:49442248-49442507 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 201
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 189, 60

Conread position: 74-341
Cow position: chr6:67213684-67213932 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 148-418
Cow position: chr6:55169836-55170108 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 164

Conread position: 153-402
Cow position: chr6:16737247-16737492 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 15

Conread position: 163-417
Cow position: chr6:49579487-49579734 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 229, 146

Conread position: 169-356
Cow position: chr6:52498097-52498283 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 140, 0

Conread position: 169-381
Cow position: chr6:32271822-32271612 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 195, 71

Conread position: 169-417
Cow position: chr6:24988428-24988678 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 140

Conread position: 169-417
Cow position: chr6:28487274-28487024 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 190, 140

Conread position: 169-417
Cow position: chr6:28701179-28700928 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 77, 141

Conread position: 169-417
Cow position: chr6:43049399-43049648 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 193, 140

Conread position: 169-420
Cow position: chr6:47977320-47977571 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 122

Conread position: 173-341
Cow position: chr6:55041777-55041613 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 138
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 173-418
Cow position: chr6:1175535-1175301 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 226, 38

Conread position: 174-393
Cow position: chr6:18969786-18969581 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 190, 43

Conread position: 174-402
Cow position: chr6:40319646-40319879 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 13, 141

Conread position: 174-415
Cow position: chr6:32125337-32125583 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 13, 81

Conread position: 174-417
Cow position: chr6:48568099-48567855 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 187
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 106, 114

Conread position: 175-341
Cow position: chr6:39997692-39997527 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 126, 0

Conread position: 176-415
Cow position: chr6:32211374-32211137 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 111

Conread position: 176-415
Cow position: chr6:54429077-54429322 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 94, 69

Conread position: 177-286
Cow position: chr6:22333200-22333089 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 177-415
Cow position: chr6:6200725-6200964 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 47

Conread position: 179-402
Cow position: chr6:227553-227773 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 185, 47

Conread position: 180-418
Cow position: chr6:13740953-13741186 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 67, 46

Show alignments to all cow chromosomes.