Cow genome map

Conread name: Pig1-132A16b

Conread position: 1-146
Cow position: chr17:24876860-24876722 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 1-149
Cow position: chr17:11032287-11032434 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 1-250
Cow position: chr17:30899062-30899316 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 180
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 24, 14

Conread position: 1-285
Cow position: chr17:37415751-37415488 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 120, 0

Conread position: 1-341
Cow position: chr17:1457242-1456920 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 234
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 243, 53

Conread position: 1-365
Cow position: chr17:14249971-14249625 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 155

Conread position: 1-371
Cow position: chr17:20084673-20084330 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 118

Conread position: 1-406
Cow position: chr17:23337912-23337535 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 112

Conread position: 1-415
Cow position: chr17:15374538-15374916 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 299
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 32, 14

Conread position: 1-415
Cow position: chr17:22774323-22773921 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 32

Conread position: 1-417
Cow position: chr17:30563-30981 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 293
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 89, 79

Conread position: 1-417
Cow position: chr17:16118325-16117938 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 51

Conread position: 1-417
Cow position: chr17:16447345-16446943 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 162

Conread position: 1-417
Cow position: chr17:17221450-17221836 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 114

Conread position: 1-418
Cow position: chr17:12290350-12289929 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 153

Conread position: 2-417
Cow position: chr17:15351183-15351589 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 56

Conread position: 2-417
Cow position: chr17:16216573-16216966 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 65

Conread position: 2-417
Cow position: chr17:20094021-20093625 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 2-418
Cow position: chr17:18200874-18201264 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 299
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 222, 43

Conread position: 3-417
Cow position: chr17:36747382-36746982 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 36

Conread position: 4-154
Cow position: chr17:2177120-2177269 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 125
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 109, 0

Conread position: 4-341
Cow position: chr17:18123530-18123217 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 234
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 241, 30

Conread position: 5-402
Cow position: chr17:254238-254609 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 104

Conread position: 6-142
Cow position: chr17:18421527-18421663 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 6-147
Cow position: chr17:15140197-15140056 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 6-163
Cow position: chr17:25551552-25551395 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 6-177
Cow position: chr17:29950354-29950524 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 157, 0

Conread position: 6-268
Cow position: chr17:40810893-40811165 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 190
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 134, 145

Conread position: 6-329
Cow position: chr17:4635633-4635343 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 97, 0

Conread position: 6-395
Cow position: chr17:24785332-24785704 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 133

Conread position: 6-415
Cow position: chr17:2201439-2201834 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-415
Cow position: chr17:21716604-21716999 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 157

Conread position: 6-416
Cow position: chr17:8222847-8223244 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 157

Conread position: 6-417
Cow position: chr17:184289-184686 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr17:1709501-1709882 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 290
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 355, 28

Conread position: 6-417
Cow position: chr17:4063480-4063868 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 150

Conread position: 6-417
Cow position: chr17:4480740-4480344 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 69

Conread position: 6-417
Cow position: chr17:6071682-6072066 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 151

Conread position: 6-417
Cow position: chr17:8212201-8212593 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 39

Conread position: 6-417
Cow position: chr17:11083993-11083601 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-417
Cow position: chr17:14212876-14212481 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 108

Conread position: 6-417
Cow position: chr17:14242968-14243371 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 133

Conread position: 6-417
Cow position: chr17:15438933-15439330 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr17:16505605-16505207 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 133

Conread position: 6-417
Cow position: chr17:16903721-16904118 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-417
Cow position: chr17:18777688-18777297 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 125

Conread position: 6-417
Cow position: chr17:28024760-28024352 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 117

Conread position: 6-417
Cow position: chr17:29824820-29824421 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 135

Conread position: 6-417
Cow position: chr17:36284409-36284806 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 150

Conread position: 6-425
Cow position: chr17:2244924-2244526 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 62

Conread position: 10-177
Cow position: chr17:2583538-2583699 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 86, 0

Conread position: 10-417
Cow position: chr17:731346-730957 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 66

Conread position: 10-417
Cow position: chr17:2265334-2265727 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 129

Conread position: 11-324
Cow position: chr17:38829029-38829321 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 39

Conread position: 12-402
Cow position: chr17:980037-979667 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 141

Conread position: 12-417
Cow position: chr17:8994192-8993802 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 127

Conread position: 13-413
Cow position: chr17:3652578-3652192 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 126

Conread position: 24-414
Cow position: chr17:36790225-36790594 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 111

Conread position: 29-415
Cow position: chr17:2839187-2839549 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 69

Conread position: 33-417
Cow position: chr17:29075198-29074850 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 277
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 371, 31

Conread position: 39-417
Cow position: chr17:148088-148447 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 53

Conread position: 39-417
Cow position: chr17:16870120-16869764 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 60

Conread position: 59-416
Cow position: chr17:15228634-15228292 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 93

Conread position: 98-288
Cow position: chr17:20033628-20033815 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 18

Conread position: 148-417
Cow position: chr17:5899296-5899034 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 201
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 13, 81

Conread position: 169-415
Cow position: chr17:19998383-19998628 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 119

Conread position: 169-417
Cow position: chr17:14006703-14006947 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 189
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 173, 58

Conread position: 169-417
Cow position: chr17:24031090-24031336 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 228, 123

Conread position: 169-417
Cow position: chr17:43991773-43992023 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 140

Conread position: 172-372
Cow position: chr17:38616930-38617130 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 192, 131

Conread position: 172-417
Cow position: chr17:3131300-3131547 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 189, 86

Conread position: 172-417
Cow position: chr17:11385747-11385993 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 189
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 192, 45

Conread position: 172-417
Cow position: chr17:21181779-21182026 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 137

Conread position: 173-385
Cow position: chr17:4920727-4920946 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 165
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 61, 143

Conread position: 173-399
Cow position: chr17:15304325-15304104 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 191, 51

Conread position: 174-406
Cow position: chr17:11382505-11382277 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 190, 113

Conread position: 174-417
Cow position: chr17:2081248-2081488 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 186
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 114, 66

Conread position: 174-417
Cow position: chr17:29471724-29471969 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 129

Conread position: 176-400
Cow position: chr17:13717001-13716784 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 112, 60

Show alignments to all cow chromosomes.