Cow genome map
| Conread name: | Pig1-132A16b |
| Conread position: | 1-136 |
| Cow position: | chr18:16045971-16045837 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1-143 |
| Cow position: | chr18:33271997-33272136 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-149 |
| Cow position: | chr18:10896553-10896696 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-153 |
| Cow position: | chr18:56483303-56483154 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 1-341 |
| Cow position: | chr18:23701438-23701120 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-341 |
| Cow position: | chr18:36457617-36457949 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 1-401 |
| Cow position: | chr18:33498611-33498235 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 1-410 |
| Cow position: | chr18:23659534-23659140 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 39 |
| Conread position: | 1-415 |
| Cow position: | chr18:22791063-22790654 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 105 |
| Conread position: | 1-415 |
| Cow position: | chr18:29240681-29241081 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 113 |
| Conread position: | 1-416 |
| Cow position: | chr18:39002764-39002383 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 107 |
| Conread position: | 1-417 |
| Cow position: | chr18:23802383-23802782 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 155 |
| Conread position: | 1-417 |
| Cow position: | chr18:28968929-28968527 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 134 |
| Conread position: | 1-417 |
| Cow position: | chr18:33607595-33607994 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 48 |
| Conread position: | 1-417 |
| Cow position: | chr18:36223803-36224196 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 38 |
| Conread position: | 1-417 |
| Cow position: | chr18:37692927-37692522 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 1-417 |
| Cow position: | chr18:41237896-41238288 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 71 |
| Conread position: | 1-418 |
| Cow position: | chr18:14127926-14127525 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 138 |
| Conread position: | 1-418 |
| Cow position: | chr18:33522585-33522995 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 33 |
| Conread position: | 2-417 |
| Cow position: | chr18:4949523-4949921 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 44 |
| Conread position: | 2-418 |
| Cow position: | chr18:17335381-17334983 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 148 |
| Conread position: | 3-415 |
| Cow position: | chr18:33501620-33501223 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 274 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 180, 87 |
| Conread position: | 3-417 |
| Cow position: | chr18:16226584-16226983 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 142 |
| Conread position: | 3-418 |
| Cow position: | chr18:7358782-7359177 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 97 |
| Conread position: | 4-415 |
| Cow position: | chr18:14419340-14419737 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 135 |
| Conread position: | 4-420 |
| Cow position: | chr18:17943875-17944281 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 126 |
| Conread position: | 6-178 |
| Cow position: | chr18:10221319-10221145 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 6-324 |
| Cow position: | chr18:23688537-23688838 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 6-409 |
| Cow position: | chr18:24619794-24620173 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 62 |
| Conread position: | 6-414 |
| Cow position: | chr18:3190109-3190503 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-415 |
| Cow position: | chr18:25354878-25355275 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 165 |
| Conread position: | 6-415 |
| Cow position: | chr18:30844539-30844146 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 32 |
| Conread position: | 6-415 |
| Cow position: | chr18:43430371-43430758 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 108 |
| Conread position: | 6-417 |
| Cow position: | chr18:6733600-6733211 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 150 |
| Conread position: | 6-417 |
| Cow position: | chr18:16094250-16094640 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-417 |
| Cow position: | chr18:16640813-16641210 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 139 |
| Conread position: | 6-417 |
| Cow position: | chr18:16857150-16857547 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 150 |
| Conread position: | 6-417 |
| Cow position: | chr18:24037481-24037089 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-417 |
| Cow position: | chr18:26243093-26242698 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 97 |
| Conread position: | 6-417 |
| Cow position: | chr18:27193874-27194265 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 62 |
| Conread position: | 6-417 |
| Cow position: | chr18:27990122-27990519 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-417 |
| Cow position: | chr18:29863239-29862846 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 150 |
| Conread position: | 6-417 |
| Cow position: | chr18:36511999-36512389 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 132 |
| Conread position: | 6-417 |
| Cow position: | chr18:41837725-41837328 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 133 |
| Conread position: | 6-417 |
| Cow position: | chr18:42609311-42608914 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 133 |
| Conread position: | 6-417 |
| Cow position: | chr18:45978747-45979127 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 25 |
| Conread position: | 6-417 |
| Cow position: | chr18:47745118-47745513 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 133 |
| Conread position: | 6-417 |
| Cow position: | chr18:50093079-50092686 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-417 |
| Cow position: | chr18:51580420-51580023 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-417 |
| Cow position: | chr18:52629893-52629496 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 75 |
| Conread position: | 6-417 |
| Cow position: | chr18:54047244-54047641 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 133 |
| Conread position: | 6-417 |
| Cow position: | chr18:54065709-54065318 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 150 |
| Conread position: | 6-417 |
| Cow position: | chr18:55554616-55555013 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-418 |
| Cow position: | chr18:603099-602702 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-418 |
| Cow position: | chr18:51459476-51459082 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 80 |
| Conread position: | 6-425 |
| Cow position: | chr18:16173248-16172848 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 150 |
| Conread position: | 7-417 |
| Cow position: | chr18:38158176-38157784 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 149 |
| Conread position: | 10-417 |
| Cow position: | chr18:5536341-5536732 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 147 |
| Conread position: | 11-417 |
| Cow position: | chr18:52574471-52574865 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 128 |
| Conread position: | 14-417 |
| Cow position: | chr18:19310531-19310910 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 54 |
| Conread position: | 18-418 |
| Cow position: | chr18:7963940-7964316 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 6 |
| Conread position: | 22-384 |
| Cow position: | chr18:23473464-23473124 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 23-417 |
| Cow position: | chr18:51345670-51346050 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 116 |
| Conread position: | 29-415 |
| Cow position: | chr18:36771143-36770783 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 240, 52 |
| Conread position: | 30-334 |
| Cow position: | chr18:32245949-32245651 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 19, 84 |
| Conread position: | 39-341 |
| Cow position: | chr18:8965691-8965975 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 188, 69 |
| Conread position: | 39-410 |
| Cow position: | chr18:28928207-28927852 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 100 |
| Conread position: | 40-415 |
| Cow position: | chr18:7946103-7946457 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 267 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 213, 109 |
| Conread position: | 166-417 |
| Cow position: | chr18:36336548-36336296 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 80 |
| Conread position: | 169-390 |
| Cow position: | chr18:51679696-51679483 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 169-415 |
| Cow position: | chr18:36133266-36133511 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 73, 57 |
| Conread position: | 169-415 |
| Cow position: | chr18:51692308-51692062 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 231, 134 |
| Conread position: | 169-415 |
| Cow position: | chr18:51713551-51713303 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 134 |
| Conread position: | 169-417 |
| Cow position: | chr18:16082001-16082248 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 110, 93 |
| Conread position: | 169-417 |
| Cow position: | chr18:27529505-27529758 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 169-417 |
| Cow position: | chr18:27539934-27540184 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 140 |
| Conread position: | 169-417 |
| Cow position: | chr18:27800369-27800122 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 119 |
| Conread position: | 174-425 |
| Cow position: | chr18:3151043-3150790 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 130 |
| Conread position: | 175-415 |
| Cow position: | chr18:9365066-9365303 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 51 |
| Conread position: | 176-393 |
| Cow position: | chr18:17001548-17001761 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 131, 47 |
| Conread position: | 176-417 |
| Cow position: | chr18:6878455-6878212 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 188, 133 |
| Conread position: | 181-341 |
| Cow position: | chr18:10221166-10221007 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 184-414 |
| Cow position: | chr18:40721859-40722082 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 215, 102 |
Show alignments to all cow chromosomes.