Cow genome map
| Conread name: | Pig1-132A16b |
| Conread position: | 1-286 |
| Cow position: | chr23:1010288-1010025 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 1-402 |
| Cow position: | chr23:5871137-5870765 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 363, 95 |
| Conread position: | 1-406 |
| Cow position: | chr23:1311311-1310928 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 1-415 |
| Cow position: | chr23:1338231-1337831 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 1-415 |
| Cow position: | chr23:11405424-11405027 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 32 |
| Conread position: | 1-415 |
| Cow position: | chr23:16999697-17000094 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 152 |
| Conread position: | 1-417 |
| Cow position: | chr23:2180587-2180201 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 28 |
| Conread position: | 1-417 |
| Cow position: | chr23:5624313-5623919 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 33 |
| Conread position: | 1-417 |
| Cow position: | chr23:11128279-11128672 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 107 |
| Conread position: | 1-417 |
| Cow position: | chr23:20025193-20025597 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 149 |
| Conread position: | 1-417 |
| Cow position: | chr23:22144051-22143649 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 138 |
| Conread position: | 1-417 |
| Cow position: | chr23:30623241-30622839 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 102 |
| Conread position: | 1-418 |
| Cow position: | chr23:8290721-8291112 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 48 |
| Conread position: | 1-418 |
| Cow position: | chr23:36308472-36308867 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 38 |
| Conread position: | 2-341 |
| Cow position: | chr23:20541235-20541552 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 94 |
| Conread position: | 2-413 |
| Cow position: | chr23:29446686-29446298 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 3-417 |
| Cow position: | chr23:22170170-22170567 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 36 |
| Conread position: | 4-417 |
| Cow position: | chr23:2408950-2408552 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 126 |
| Conread position: | 4-417 |
| Cow position: | chr23:29447988-29447599 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 126 |
| Conread position: | 4-418 |
| Cow position: | chr23:12978020-12978400 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 64 |
| Conread position: | 4-418 |
| Cow position: | chr23:16496013-16495615 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 36 |
| Conread position: | 6-154 |
| Cow position: | chr23:3877879-3877731 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-286 |
| Cow position: | chr23:27313109-27313373 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 6-339 |
| Cow position: | chr23:3709668-3709979 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 6-340 |
| Cow position: | chr23:1048609-1048268 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 311 |
| Conread position: | 6-341 |
| Cow position: | chr23:14959689-14959378 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 6-414 |
| Cow position: | chr23:671436-671828 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-415 |
| Cow position: | chr23:11377053-11376659 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 150 |
| Conread position: | 6-415 |
| Cow position: | chr23:11782050-11782445 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 150 |
| Conread position: | 6-415 |
| Cow position: | chr23:15180223-15180615 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 107 |
| Conread position: | 6-417 |
| Cow position: | chr23:1959391-1959788 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 133 |
| Conread position: | 6-417 |
| Cow position: | chr23:2023820-2023428 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 133 |
| Conread position: | 6-417 |
| Cow position: | chr23:3302119-3302516 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 70 |
| Conread position: | 6-417 |
| Cow position: | chr23:4516801-4517187 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 47 |
| Conread position: | 6-417 |
| Cow position: | chr23:4637091-4636690 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 157 |
| Conread position: | 6-417 |
| Cow position: | chr23:14215962-14215573 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 60 |
| Conread position: | 6-417 |
| Cow position: | chr23:14265611-14266001 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 44 |
| Conread position: | 6-417 |
| Cow position: | chr23:14970687-14970295 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 54 |
| Conread position: | 6-417 |
| Cow position: | chr23:24098392-24098787 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 150 |
| Conread position: | 6-417 |
| Cow position: | chr23:28915597-28915989 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 32 |
| Conread position: | 6-417 |
| Cow position: | chr23:29043047-29043445 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 134 |
| Conread position: | 6-417 |
| Cow position: | chr23:30634330-30633930 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 150 |
| Conread position: | 6-417 |
| Cow position: | chr23:31605692-31606089 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 133 |
| Conread position: | 6-417 |
| Cow position: | chr23:36027988-36027591 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 133 |
| Conread position: | 6-417 |
| Cow position: | chr23:40553858-40553480 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 293 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 358, 150 |
| Conread position: | 6-418 |
| Cow position: | chr23:11343761-11344155 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 150 |
| Conread position: | 6-421 |
| Cow position: | chr23:37199246-37198845 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 150 |
| Conread position: | 6-423 |
| Cow position: | chr23:4436883-4437287 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 34 |
| Conread position: | 7-418 |
| Cow position: | chr23:38934959-38934572 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 47 |
| Conread position: | 10-320 |
| Cow position: | chr23:39389337-39389631 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 292, 146 |
| Conread position: | 10-417 |
| Cow position: | chr23:24119823-24120216 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 129 |
| Conread position: | 11-341 |
| Cow position: | chr23:13519106-13519413 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 11-402 |
| Cow position: | chr23:29472040-29471668 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 137 |
| Conread position: | 12-417 |
| Cow position: | chr23:28221971-28222362 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 13-402 |
| Cow position: | chr23:40825069-40825425 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 123 |
| Conread position: | 19-417 |
| Cow position: | chr23:1113229-1113613 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 120 |
| Conread position: | 23-418 |
| Cow position: | chr23:7293468-7293842 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 69 |
| Conread position: | 24-415 |
| Cow position: | chr23:1322114-1321740 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 119 |
| Conread position: | 28-418 |
| Cow position: | chr23:11078565-11078941 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 56 |
| Conread position: | 30-374 |
| Cow position: | chr23:39108531-39108198 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 91 |
| Conread position: | 30-402 |
| Cow position: | chr23:26230418-26230768 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 115 |
| Conread position: | 33-402 |
| Cow position: | chr23:25553881-25554234 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 71, 118 |
| Conread position: | 41-415 |
| Cow position: | chr23:1398927-1398583 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 68 |
| Conread position: | 41-416 |
| Cow position: | chr23:2791475-2791115 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 99 |
| Conread position: | 47-287 |
| Cow position: | chr23:25412195-25411972 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 70-414 |
| Cow position: | chr23:573936-573609 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 69 |
| Conread position: | 83-418 |
| Cow position: | chr23:26840496-26840833 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 84-420 |
| Cow position: | chr23:30243830-30244143 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 280, 67 |
| Conread position: | 87-415 |
| Cow position: | chr23:362297-361983 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 59 |
| Conread position: | 131-359 |
| Cow position: | chr23:2270008-2269777 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 31, 175 |
| Conread position: | 169-417 |
| Cow position: | chr23:2369202-2369448 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 71 |
| Conread position: | 169-417 |
| Cow position: | chr23:4544906-4544656 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 193, 140 |
| Conread position: | 169-417 |
| Cow position: | chr23:15568973-15569223 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 193, 140 |
| Conread position: | 169-417 |
| Cow position: | chr23:35285109-35284859 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 140 |
| Conread position: | 172-341 |
| Cow position: | chr23:4552380-4552547 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 172-416 |
| Cow position: | chr23:26941180-26941429 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 53, 134 |
| Conread position: | 173-417 |
| Cow position: | chr23:14911016-14910770 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 189, 202 |
| Conread position: | 173-418 |
| Cow position: | chr23:4487553-4487306 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 136 |
| Conread position: | 174-349 |
| Cow position: | chr23:5539719-5539548 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 174-415 |
| Cow position: | chr23:5721781-5721539 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 50 |
| Conread position: | 174-417 |
| Cow position: | chr23:39812441-39812681 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 141, 52 |
| Conread position: | 177-417 |
| Cow position: | chr23:26305588-26305829 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 181-417 |
| Cow position: | chr23:4100301-4100539 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 128 |
Show alignments to all cow chromosomes.