Cow genome map

Conread name: Pig1-132A16b

Conread position: 1-133
Cow position: chr28:19300355-19300488 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 110
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 1-142
Cow position: chr28:3004212-3004071 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-177
Cow position: chr28:5825155-5825330 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 39, 91

Conread position: 1-314
Cow position: chr28:21104667-21104377 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 42, 0

Conread position: 1-341
Cow position: chr28:15266072-15265753 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 18, 0

Conread position: 1-398
Cow position: chr28:10295109-10295476 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 44

Conread position: 1-408
Cow position: chr28:8717647-8717260 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 143

Conread position: 1-414
Cow position: chr28:7981653-7981252 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 71

Conread position: 1-415
Cow position: chr28:5772723-5773116 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 70

Conread position: 1-415
Cow position: chr28:11501916-11501522 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 142

Conread position: 1-415
Cow position: chr28:12935968-12935568 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 147

Conread position: 1-415
Cow position: chr28:21379799-21380196 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 155

Conread position: 1-415
Cow position: chr28:29435501-29435100 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 152

Conread position: 1-416
Cow position: chr28:34879136-34878743 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 43

Conread position: 1-417
Cow position: chr28:1384147-1383744 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 144

Conread position: 1-417
Cow position: chr28:5816927-5817310 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 143

Conread position: 1-417
Cow position: chr28:13373232-13372833 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 76

Conread position: 1-417
Cow position: chr28:14150294-14150695 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 143

Conread position: 1-417
Cow position: chr28:21362816-21363224 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 16

Conread position: 1-417
Cow position: chr28:23615450-23615861 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 162

Conread position: 1-418
Cow position: chr28:23868544-23868940 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 144

Conread position: 1-419
Cow position: chr28:30870378-30870781 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 146

Conread position: 2-94
Cow position: chr28:28340162-28340255 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 2-341
Cow position: chr28:7744404-7744733 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 162

Conread position: 2-402
Cow position: chr28:14666452-14666821 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 154

Conread position: 2-415
Cow position: chr28:26923322-26922927 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 143

Conread position: 2-417
Cow position: chr28:5768257-5768656 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 142

Conread position: 2-417
Cow position: chr28:6047103-6047499 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 70

Conread position: 2-417
Cow position: chr28:29807134-29806736 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 148

Conread position: 2-417
Cow position: chr28:33255628-33256017 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 154

Conread position: 3-417
Cow position: chr28:25070155-25070555 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 147

Conread position: 4-415
Cow position: chr28:10772390-10772782 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 24

Conread position: 4-416
Cow position: chr28:4214199-4214598 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 146

Conread position: 6-153
Cow position: chr28:17131825-17131678 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 6-154
Cow position: chr28:6472128-6471981 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 40, 0

Conread position: 6-154
Cow position: chr28:16181679-16181827 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 6-154
Cow position: chr28:24488074-24487928 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 120
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 34, 0

Conread position: 6-177
Cow position: chr28:1214470-1214300 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 157, 0

Conread position: 6-177
Cow position: chr28:12406851-12406683 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 90, 0

Conread position: 6-177
Cow position: chr28:21767987-21767823 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 6-178
Cow position: chr28:32786116-32785943 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 148, 0

Conread position: 6-300
Cow position: chr28:15032790-15032512 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 150, 0

Conread position: 6-341
Cow position: chr28:17391744-17392062 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 6-346
Cow position: chr28:6776692-6776370 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 6-394
Cow position: chr28:5211433-5211803 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 44

Conread position: 6-417
Cow position: chr28:444719-445107 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 150

Conread position: 6-417
Cow position: chr28:1943985-1943588 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 134

Conread position: 6-417
Cow position: chr28:1956680-1957071 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 20

Conread position: 6-417
Cow position: chr28:5111412-5111016 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 150

Conread position: 6-417
Cow position: chr28:6319836-6319443 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 80

Conread position: 6-417
Cow position: chr28:6478529-6478926 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr28:6959540-6959939 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 124

Conread position: 6-417
Cow position: chr28:7005338-7005736 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr28:9182180-9182577 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr28:10303149-10303545 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 97

Conread position: 6-417
Cow position: chr28:10473275-10473660 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 28

Conread position: 6-417
Cow position: chr28:13463274-13463671 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 133

Conread position: 6-417
Cow position: chr28:15917216-15916819 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 150

Conread position: 6-417
Cow position: chr28:20967358-20966961 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr28:22254889-22254485 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 123

Conread position: 6-417
Cow position: chr28:23310025-23309628 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr28:23543933-23544330 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-417
Cow position: chr28:24886171-24886567 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 133

Conread position: 6-417
Cow position: chr28:25828706-25829103 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr28:30098187-30098584 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 133

Conread position: 6-417
Cow position: chr28:34731043-34731439 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 129

Conread position: 6-418
Cow position: chr28:29823496-29823894 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 133

Conread position: 7-415
Cow position: chr28:7336295-7336692 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 132

Conread position: 9-415
Cow position: chr28:30249440-30249832 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 147

Conread position: 10-417
Cow position: chr28:482393-482002 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 62

Conread position: 10-417
Cow position: chr28:5336490-5336097 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 129

Conread position: 10-417
Cow position: chr28:20935097-20934691 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 153

Conread position: 13-417
Cow position: chr28:18516828-18516437 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 144

Conread position: 19-234
Cow position: chr28:1199703-1199907 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 8, 0

Conread position: 24-413
Cow position: chr28:17599656-17599274 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 273
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 201, 105

Conread position: 31-417
Cow position: chr28:13357623-13357258 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 69

Conread position: 33-418
Cow position: chr28:24671360-24671729 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 59

Conread position: 41-414
Cow position: chr28:17369399-17369758 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 98

Conread position: 43-394
Cow position: chr28:24644808-24645141 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 87

Conread position: 61-299
Cow position: chr28:5367993-5367771 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 84, 0

Conread position: 63-401
Cow position: chr28:25248487-25248808 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 247
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 155, 76

Conread position: 68-417
Cow position: chr28:331821-332156 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 71

Conread position: 71-417
Cow position: chr28:2422085-2422417 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 68

Conread position: 73-358
Cow position: chr28:2122939-2123200 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 81-437
Cow position: chr28:34850540-34850877 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 64

Conread position: 150-407
Cow position: chr28:17314836-17315090 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 19

Conread position: 153-383
Cow position: chr28:28185029-28185257 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 166
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 17, 151

Conread position: 164-417
Cow position: chr28:22279984-22279731 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 63

Conread position: 166-384
Cow position: chr28:5055003-5054784 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 138

Conread position: 168-369
Cow position: chr28:19565874-19565672 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 5, 79

Conread position: 169-417
Cow position: chr28:3012730-3012475 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 63, 142

Conread position: 169-417
Cow position: chr28:10562862-10563102 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 230, 140

Conread position: 169-417
Cow position: chr28:27478226-27478475 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 189
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 193, 140

Conread position: 169-418
Cow position: chr28:23839426-23839669 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 102

Conread position: 171-402
Cow position: chr28:28116070-28116300 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 138

Conread position: 172-415
Cow position: chr28:10530263-10530013 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 189
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 192, 118

Conread position: 172-420
Cow position: chr28:25425130-25424886 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 191
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 60, 54

Conread position: 173-362
Cow position: chr28:3870773-3870962 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 132
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 158, 130

Conread position: 173-417
Cow position: chr28:12117778-12117532 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 136

Conread position: 174-406
Cow position: chr28:13242851-13242614 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 198

Conread position: 174-413
Cow position: chr28:615444-615685 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 114, 119

Conread position: 175-417
Cow position: chr28:19552917-19552679 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 187, 61

Conread position: 176-417
Cow position: chr28:15273046-15272803 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 188, 125

Show alignments to all cow chromosomes.