Cow genome map

Conread name: Pig1-132A16b

Conread position: 1-149
Cow position: chr5:17645989-17645838 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 126
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 32, 0

Conread position: 1-149
Cow position: chr5:21524149-21524297 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-149
Cow position: chr5:26135172-26135024 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 122
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1-149
Cow position: chr5:73444496-73444644 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-306
Cow position: chr5:16085715-16085425 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 144

Conread position: 1-321
Cow position: chr5:47854922-47855225 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 163

Conread position: 1-325
Cow position: chr5:75755681-75755982 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 242
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 227, 42

Conread position: 1-328
Cow position: chr5:41523895-41523582 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 102

Conread position: 1-340
Cow position: chr5:58461603-58461278 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 78

Conread position: 1-362
Cow position: chr5:46707733-46708095 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 162

Conread position: 1-374
Cow position: chr5:1105776-1105424 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 57

Conread position: 1-396
Cow position: chr5:51501978-51502348 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 92

Conread position: 1-401
Cow position: chr5:18703332-18702960 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 9

Conread position: 1-402
Cow position: chr5:27691084-27691462 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 284
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 61, 57

Conread position: 1-402
Cow position: chr5:72046567-72046192 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 95

Conread position: 1-414
Cow position: chr5:41411342-41410944 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 109

Conread position: 1-415
Cow position: chr5:15723220-15722828 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 143

Conread position: 1-415
Cow position: chr5:34527669-34528050 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 39

Conread position: 1-417
Cow position: chr5:6576497-6576090 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 1-417
Cow position: chr5:14551505-14551105 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 144

Conread position: 1-417
Cow position: chr5:31120110-31119699 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 51

Conread position: 1-417
Cow position: chr5:35207338-35207734 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 142

Conread position: 1-417
Cow position: chr5:42676343-42676742 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 48

Conread position: 1-417
Cow position: chr5:52829690-52829289 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 148

Conread position: 1-418
Cow position: chr5:27178732-27179133 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 18

Conread position: 1-423
Cow position: chr5:7042338-7042732 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 100

Conread position: 1-423
Cow position: chr5:31634533-31634929 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 57

Conread position: 1-425
Cow position: chr5:54721753-54722157 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 20

Conread position: 2-326
Cow position: chr5:4434407-4434100 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 0

Conread position: 2-341
Cow position: chr5:6219041-6219364 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 115

Conread position: 2-415
Cow position: chr5:27549412-27549018 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 82

Conread position: 2-417
Cow position: chr5:5937402-5937797 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 142

Conread position: 2-417
Cow position: chr5:45705108-45705507 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 143

Conread position: 3-341
Cow position: chr5:46735179-46734860 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 0

Conread position: 3-401
Cow position: chr5:50728397-50728782 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 132

Conread position: 4-362
Cow position: chr5:23353839-23354184 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 162

Conread position: 6-119
Cow position: chr5:46000074-45999962 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 6-154
Cow position: chr5:24632938-24632790 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 6-164
Cow position: chr5:48805360-48805202 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 6-178
Cow position: chr5:18558307-18558136 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 85, 0

Conread position: 6-234
Cow position: chr5:39174142-39173906 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 139, 0

Conread position: 6-286
Cow position: chr5:6585352-6585088 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 202
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 239, 34

Conread position: 6-315
Cow position: chr5:27195961-27195669 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 132, 0

Conread position: 6-339
Cow position: chr5:7396349-7396660 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 56

Conread position: 6-340
Cow position: chr5:12921499-12921814 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 90, 0

Conread position: 6-340
Cow position: chr5:18667408-18667725 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 6-343
Cow position: chr5:10066449-10066129 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 6-346
Cow position: chr5:8178235-8178558 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 6-394
Cow position: chr5:54786007-54785637 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 157

Conread position: 6-406
Cow position: chr5:18901428-18901797 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 33

Conread position: 6-415
Cow position: chr5:18404955-18404574 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 90

Conread position: 6-415
Cow position: chr5:51166208-51165813 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 90

Conread position: 6-416
Cow position: chr5:15677162-15677553 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 48

Conread position: 6-416
Cow position: chr5:45179745-45179352 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 38

Conread position: 6-416
Cow position: chr5:51746325-51746715 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 33

Conread position: 6-417
Cow position: chr5:280078-279682 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 34

Conread position: 6-417
Cow position: chr5:443208-442811 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:1338820-1338426 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-417
Cow position: chr5:1383082-1383471 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 82

Conread position: 6-417
Cow position: chr5:1395361-1394962 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 132

Conread position: 6-417
Cow position: chr5:2395207-2394816 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 124

Conread position: 6-417
Cow position: chr5:2917563-2917953 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 110

Conread position: 6-417
Cow position: chr5:2976887-2977285 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 91

Conread position: 6-417
Cow position: chr5:3501027-3500634 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 134

Conread position: 6-417
Cow position: chr5:4015771-4015374 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:4683399-4683003 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 108

Conread position: 6-417
Cow position: chr5:4754032-4753636 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:4963285-4962889 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:5106325-5106720 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 91

Conread position: 6-417
Cow position: chr5:5924876-5924485 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:6151731-6151334 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 157

Conread position: 6-417
Cow position: chr5:6455562-6455165 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:6772667-6773063 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 129

Conread position: 6-417
Cow position: chr5:10772724-10772332 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 33

Conread position: 6-417
Cow position: chr5:10921946-10922343 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-417
Cow position: chr5:12133694-12134091 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:13807650-13807264 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 54

Conread position: 6-417
Cow position: chr5:14636477-14636081 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 44

Conread position: 6-417
Cow position: chr5:18118874-18118477 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:19978813-19978415 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 133

Conread position: 6-417
Cow position: chr5:24087949-24087552 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 157

Conread position: 6-417
Cow position: chr5:24299114-24299511 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 133

Conread position: 6-417
Cow position: chr5:27907361-27906970 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 67

Conread position: 6-417
Cow position: chr5:29256113-29255716 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:31709401-31709789 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:34683259-34682865 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 70

Conread position: 6-417
Cow position: chr5:34708870-34709265 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-417
Cow position: chr5:37380187-37380582 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:39362973-39363370 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:43437841-43437446 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-417
Cow position: chr5:44275696-44276093 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:44709271-44708874 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:48026369-48026766 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:49117250-49116854 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 146

Conread position: 6-417
Cow position: chr5:49221392-49220999 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 62

Conread position: 6-417
Cow position: chr5:53075769-53075372 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 133

Conread position: 6-417
Cow position: chr5:55722630-55723027 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:58245433-58245829 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 74

Conread position: 6-417
Cow position: chr5:62436224-62436617 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 150

Conread position: 6-417
Cow position: chr5:64061429-64061825 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 33

Conread position: 6-417
Cow position: chr5:64778901-64778508 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 134

Conread position: 6-417
Cow position: chr5:72856975-72857374 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-417
Cow position: chr5:75755016-75754626 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 58

Conread position: 6-418
Cow position: chr5:7175399-7175797 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 150

Conread position: 6-418
Cow position: chr5:11631884-11631486 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-418
Cow position: chr5:24101751-24102149 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 133

Conread position: 6-418
Cow position: chr5:29742460-29742059 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 150

Conread position: 7-417
Cow position: chr5:47342975-47343372 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 149

Conread position: 8-415
Cow position: chr5:28223543-28223935 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 64

Conread position: 10-343
Cow position: chr5:58199115-58199430 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 10-357
Cow position: chr5:44617250-44617580 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 10-415
Cow position: chr5:46676718-46677106 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 146

Conread position: 10-417
Cow position: chr5:710046-709657 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 129

Conread position: 10-417
Cow position: chr5:14558353-14557957 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 138

Conread position: 10-417
Cow position: chr5:42283275-42283661 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 86

Conread position: 10-417
Cow position: chr5:58192023-58192413 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 70

Conread position: 10-417
Cow position: chr5:58770767-58770374 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 129

Conread position: 10-417
Cow position: chr5:59268522-59268917 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 86

Conread position: 13-334
Cow position: chr5:29763019-29763319 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 13-415
Cow position: chr5:52041375-52040993 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 6

Conread position: 14-384
Cow position: chr5:17426041-17425687 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 122

Conread position: 14-414
Cow position: chr5:32964951-32964565 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 116

Conread position: 14-415
Cow position: chr5:50599168-50599555 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 100

Conread position: 14-420
Cow position: chr5:25927329-25926936 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 61

Conread position: 15-177
Cow position: chr5:37384425-37384264 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 138, 0

Conread position: 15-415
Cow position: chr5:32088669-32088284 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 110

Conread position: 23-416
Cow position: chr5:39936217-39936599 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 93

Conread position: 24-341
Cow position: chr5:51684496-51684201 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 228
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 19, 49

Conread position: 32-417
Cow position: chr5:5787203-5786831 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 116

Conread position: 33-417
Cow position: chr5:28016184-28016552 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 115

Conread position: 36-406
Cow position: chr5:68593554-68593904 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 92

Conread position: 37-417
Cow position: chr5:14904948-14904591 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 68, 108

Conread position: 41-340
Cow position: chr5:54125200-54125483 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 223
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 55, 108

Conread position: 41-417
Cow position: chr5:10542540-10542180 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 99

Conread position: 43-417
Cow position: chr5:411581-411221 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 96

Conread position: 52-414
Cow position: chr5:25496262-25495924 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 99

Conread position: 58-417
Cow position: chr5:31217245-31217587 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 88

Conread position: 60-344
Cow position: chr5:54868371-54868638 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 60-418
Cow position: chr5:52646185-52645844 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 256
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 302, 85

Conread position: 68-414
Cow position: chr5:41980553-41980880 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 82

Conread position: 74-416
Cow position: chr5:19780866-19780536 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 71

Conread position: 86-418
Cow position: chr5:19471082-19470757 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 55

Conread position: 108-296
Cow position: chr5:64845086-64844896 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 20, 163

Conread position: 152-417
Cow position: chr5:38883457-38883191 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 114

Conread position: 154-417
Cow position: chr5:47565084-47564819 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 155

Conread position: 154-417
Cow position: chr5:47565552-47565287 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 155

Conread position: 160-417
Cow position: chr5:34584946-34584696 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 193
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 239, 149

Conread position: 164-379
Cow position: chr5:29122786-29122575 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 128

Conread position: 164-417
Cow position: chr5:47704916-47704662 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 83

Conread position: 169-362
Cow position: chr5:53854950-53855139 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 67, 57

Conread position: 169-402
Cow position: chr5:53866280-53866510 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 118

Conread position: 169-417
Cow position: chr5:31285105-31285355 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 140

Conread position: 169-417
Cow position: chr5:47590346-47590097 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 193, 76

Conread position: 172-415
Cow position: chr5:30275935-30276175 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 85, 132

Conread position: 172-415
Cow position: chr5:37758589-37758346 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 54

Conread position: 172-417
Cow position: chr5:42668172-42667918 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 62, 105

Conread position: 172-417
Cow position: chr5:57986746-57986990 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 137

Conread position: 174-416
Cow position: chr5:54714513-54714270 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 104

Conread position: 174-417
Cow position: chr5:38831470-38831717 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 130

Conread position: 181-417
Cow position: chr5:56931631-56931393 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 181, 128

Show alignments to all cow chromosomes.