Cow genome map

Conread name: Pig1-34D03

Conread position: 4-362
Cow position: chr1:15347767-15347405 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 218

Conread position: 6-408
Cow position: chr1:33388116-33388514 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 283
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 22, 201

Conread position: 8-470
Cow position: chr1:91718811-91718343 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 8-471
Cow position: chr1:17012913-17012442 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 160

Conread position: 8-471
Cow position: chr1:40684867-40684394 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 102

Conread position: 8-471
Cow position: chr1:85791514-85791983 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 35

Conread position: 11-472
Cow position: chr1:79457141-79456675 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 74

Conread position: 14-327
Cow position: chr1:73009632-73009936 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 219
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 75, 14

Conread position: 14-477
Cow position: chr1:79637103-79636630 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 115

Conread position: 15-462
Cow position: chr1:52918789-52918341 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 306

Conread position: 16-148
Cow position: chr1:31396244-31396378 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 16-201
Cow position: chr1:13253607-13253420 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 12, 0

Conread position: 16-202
Cow position: chr1:89809792-89809603 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 151
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 19, 33

Conread position: 16-255
Cow position: chr1:32361285-32361047 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 162
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 192, 84

Conread position: 16-269
Cow position: chr1:40513669-40513415 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 111

Conread position: 16-301
Cow position: chr1:87969179-87969469 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 193
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 73, 170

Conread position: 16-317
Cow position: chr1:82407512-82407211 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 207
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 81, 12

Conread position: 16-340
Cow position: chr1:28276469-28276795 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 73, 207

Conread position: 16-340
Cow position: chr1:86609029-86609346 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 84

Conread position: 16-462
Cow position: chr1:72187043-72186590 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 206

Conread position: 16-462
Cow position: chr1:86699390-86698930 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 208

Conread position: 16-465
Cow position: chr1:56163157-56163617 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 209

Conread position: 16-465
Cow position: chr1:69536738-69537187 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 8

Conread position: 16-471
Cow position: chr1:13645559-13646008 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 86

Conread position: 16-471
Cow position: chr1:18244560-18244088 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 197

Conread position: 16-471
Cow position: chr1:18406362-18405901 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 112

Conread position: 16-471
Cow position: chr1:18880557-18880096 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 17

Conread position: 16-471
Cow position: chr1:21087244-21087710 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 205

Conread position: 16-471
Cow position: chr1:30027713-30027255 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 191

Conread position: 16-471
Cow position: chr1:30283708-30283246 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 37

Conread position: 16-471
Cow position: chr1:45097536-45097991 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 83

Conread position: 16-471
Cow position: chr1:52233283-52232819 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 57

Conread position: 16-471
Cow position: chr1:71562747-71562277 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 417

Conread position: 16-471
Cow position: chr1:72136471-72136936 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 110

Conread position: 16-471
Cow position: chr1:72656810-72657283 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 57

Conread position: 16-471
Cow position: chr1:80359338-80358884 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 105

Conread position: 16-471
Cow position: chr1:82918830-82918368 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 41

Conread position: 16-471
Cow position: chr1:86548303-86547838 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 207

Conread position: 16-471
Cow position: chr1:88635203-88635667 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 204

Conread position: 16-471
Cow position: chr1:89425418-89425870 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 45

Conread position: 16-471
Cow position: chr1:97123660-97124104 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 149

Conread position: 16-471
Cow position: chr1:99349190-99348741 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 82

Conread position: 16-471
Cow position: chr1:101858155-101857690 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 207

Conread position: 16-472
Cow position: chr1:76623117-76622660 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 102

Conread position: 16-472
Cow position: chr1:76752822-76752356 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 138

Conread position: 16-472
Cow position: chr1:97226872-97226414 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 83

Conread position: 16-474
Cow position: chr1:67835310-67834840 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 207

Conread position: 16-476
Cow position: chr1:1461499-1461029 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 119

Conread position: 16-476
Cow position: chr1:34689170-34689644 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 35

Conread position: 16-476
Cow position: chr1:67286318-67286789 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 68

Conread position: 16-477
Cow position: chr1:42290221-42290687 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 114

Conread position: 16-477
Cow position: chr1:87244627-87245115 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 15

Conread position: 16-477
Cow position: chr1:89899874-89899401 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 220

Conread position: 17-217
Cow position: chr1:79884997-79884795 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 75, 0

Conread position: 17-245
Cow position: chr1:40953539-40953762 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 18, 87

Conread position: 17-258
Cow position: chr1:6708262-6708019 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 183
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 11, 204

Conread position: 17-298
Cow position: chr1:59674318-59674594 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 11, 119

Conread position: 17-457
Cow position: chr1:99910783-99911241 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 11

Conread position: 17-460
Cow position: chr1:54365989-54365543 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 108

Conread position: 17-462
Cow position: chr1:76545711-76545252 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 208

Conread position: 17-471
Cow position: chr1:37419916-37419476 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 53

Conread position: 17-471
Cow position: chr1:40307896-40308354 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 206

Conread position: 17-471
Cow position: chr1:77112609-77112155 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 44

Conread position: 17-472
Cow position: chr1:8824891-8825347 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 108

Conread position: 17-477
Cow position: chr1:19992845-19992388 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 11

Conread position: 17-477
Cow position: chr1:87207582-87207124 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 14

Conread position: 18-156
Cow position: chr1:43019958-43020096 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 57

Conread position: 18-181
Cow position: chr1:85881575-85881741 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 18-196
Cow position: chr1:22864085-22863905 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 10, 0

Conread position: 18-199
Cow position: chr1:5501808-5501991 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 141
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 10, 0

Conread position: 18-294
Cow position: chr1:69922630-69922354 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 107

Conread position: 18-363
Cow position: chr1:79920894-79920545 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-375
Cow position: chr1:25549896-25550249 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 206

Conread position: 18-397
Cow position: chr1:98783890-98784265 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 6

Conread position: 18-400
Cow position: chr1:44101913-44101532 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 154

Conread position: 18-403
Cow position: chr1:33895512-33895901 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 203

Conread position: 18-451
Cow position: chr1:55775987-55776413 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 202

Conread position: 18-462
Cow position: chr1:28872910-28873361 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 187

Conread position: 18-462
Cow position: chr1:49974358-49973903 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-462
Cow position: chr1:68607712-68607256 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 6

Conread position: 18-462
Cow position: chr1:88130593-88131058 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 11

Conread position: 18-464
Cow position: chr1:63605947-63605492 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 6

Conread position: 18-466
Cow position: chr1:89740413-89739978 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 123

Conread position: 18-467
Cow position: chr1:55276653-55276193 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 206

Conread position: 18-469
Cow position: chr1:3386174-3385726 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-469
Cow position: chr1:31366245-31365784 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 204

Conread position: 18-469
Cow position: chr1:42736290-42736746 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 120

Conread position: 18-469
Cow position: chr1:57567783-57568246 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 203

Conread position: 18-469
Cow position: chr1:72080605-72081073 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-469
Cow position: chr1:85780945-85780486 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-471
Cow position: chr1:8554161-8554625 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-471
Cow position: chr1:11292271-11291809 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 204

Conread position: 18-471
Cow position: chr1:11863403-11862962 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 140

Conread position: 18-471
Cow position: chr1:13450043-13450503 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 98

Conread position: 18-471
Cow position: chr1:17036725-17036260 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-471
Cow position: chr1:20828722-20829186 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-471
Cow position: chr1:28710749-28711213 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-471
Cow position: chr1:28801590-28801104 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 6

Conread position: 18-471
Cow position: chr1:33711896-33712360 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-471
Cow position: chr1:33851112-33851574 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 128

Conread position: 18-471
Cow position: chr1:38414637-38415094 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 31

Conread position: 18-471
Cow position: chr1:39543604-39544066 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 203

Conread position: 18-471
Cow position: chr1:56489672-56490137 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 207

Conread position: 18-471
Cow position: chr1:59210301-59209842 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 40

Conread position: 18-471
Cow position: chr1:61308835-61309299 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 203

Conread position: 18-471
Cow position: chr1:62925446-62925910 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-471
Cow position: chr1:69766297-69766759 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 107

Conread position: 18-471
Cow position: chr1:82564337-82564800 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 202

Conread position: 18-471
Cow position: chr1:82652470-82652950 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 57

Conread position: 18-471
Cow position: chr1:89770849-89770388 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 187

Conread position: 18-471
Cow position: chr1:91898834-91899293 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 40

Conread position: 18-472
Cow position: chr1:22000123-21999660 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-472
Cow position: chr1:25180198-25179733 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-472
Cow position: chr1:52359443-52358980 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-472
Cow position: chr1:56194098-56193634 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 42

Conread position: 18-472
Cow position: chr1:57367299-57366835 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 202

Conread position: 18-472
Cow position: chr1:58335669-58336132 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-472
Cow position: chr1:62244815-62244350 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-472
Cow position: chr1:69402825-69403277 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 185

Conread position: 18-472
Cow position: chr1:79335971-79335507 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 12

Conread position: 18-472
Cow position: chr1:91893278-91892826 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 32

Conread position: 18-472
Cow position: chr1:100597549-100597076 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 211

Conread position: 18-472
Cow position: chr1:102435194-102434742 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 136

Conread position: 19-278
Cow position: chr1:17941977-17941715 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 202

Conread position: 19-469
Cow position: chr1:33550757-33551212 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 78

Conread position: 19-471
Cow position: chr1:40053189-40053652 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 202

Conread position: 19-474
Cow position: chr1:79109128-79109573 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 71

Conread position: 20-461
Cow position: chr1:102549067-102549521 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 9

Conread position: 20-471
Cow position: chr1:59933388-59933834 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 91

Conread position: 20-471
Cow position: chr1:63501293-63501748 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 176

Conread position: 20-472
Cow position: chr1:72981102-72981564 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 201

Conread position: 21-404
Cow position: chr1:18014355-18013967 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 259
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 7, 193

Conread position: 21-471
Cow position: chr1:57656388-57656840 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 12

Conread position: 21-472
Cow position: chr1:78289719-78290161 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 8

Conread position: 24-279
Cow position: chr1:62805965-62805709 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 5

Conread position: 24-471
Cow position: chr1:101149673-101150129 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 59

Conread position: 24-472
Cow position: chr1:93854361-93854818 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 5

Conread position: 26-472
Cow position: chr1:56144490-56144041 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 64

Conread position: 27-213
Cow position: chr1:38387800-38387618 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 155, 70

Conread position: 27-456
Cow position: chr1:39482140-39481701 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 195

Conread position: 29-471
Cow position: chr1:56723000-56723451 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 69

Conread position: 41-457
Cow position: chr1:48245668-48246096 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 179

Conread position: 42-466
Cow position: chr1:62853984-62853553 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 82

Conread position: 42-471
Cow position: chr1:36919765-36920216 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 309
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 26, 40

Conread position: 43-468
Cow position: chr1:12062338-12061904 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 177

Conread position: 51-471
Cow position: chr1:25887289-25886866 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 93

Conread position: 54-472
Cow position: chr1:73071187-73070759 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 166

Conread position: 79-472
Cow position: chr1:82924282-82923882 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 140

Conread position: 88-400
Cow position: chr1:32342170-32341857 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 142

Conread position: 89-471
Cow position: chr1:60339211-60339602 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 130

Conread position: 91-471
Cow position: chr1:29362204-29362593 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 128

Conread position: 93-403
Cow position: chr1:77117681-77117365 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 126

Conread position: 105-400
Cow position: chr1:20988874-20989174 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 207
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 92, 113

Conread position: 105-471
Cow position: chr1:67901996-67901632 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 43

Conread position: 120-477
Cow position: chr1:89479258-89479609 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 96

Conread position: 124-471
Cow position: chr1:40574156-40574510 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 95

Conread position: 124-472
Cow position: chr1:58884127-58883770 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 95

Conread position: 134-472
Cow position: chr1:94659643-94659979 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 13

Conread position: 136-471
Cow position: chr1:28722825-28723170 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 83

Conread position: 152-471
Cow position: chr1:31396659-31396987 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 70

Conread position: 161-464
Cow position: chr1:77655685-77655983 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 204
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 176, 36

Conread position: 161-471
Cow position: chr1:88270618-88270316 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 212
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 62, 42

Conread position: 162-471
Cow position: chr1:55323076-55322761 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 61

Conread position: 175-472
Cow position: chr1:85881995-85882299 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 47

Conread position: 195-472
Cow position: chr1:5501949-5502231 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 16

Conread position: 205-470
Cow position: chr1:82913120-82912848 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 15

Conread position: 223-471
Cow position: chr1:95239410-95239666 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 206

Conread position: 239-381
Cow position: chr1:60280456-60280313 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 101, 0

Conread position: 248-454
Cow position: chr1:40953968-40954181 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 87, 21

Conread position: 255-469
Cow position: chr1:17941710-17941493 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 90

Conread position: 297-471
Cow position: chr1:40513264-40513084 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 43, 0

Conread position: 297-472
Cow position: chr1:69922324-69922141 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 49, 127

Conread position: 300-462
Cow position: chr1:65386445-65386615 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 46, 125

Conread position: 308-477
Cow position: chr1:69060621-69060789 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 31, 49

Conread position: 316-471
Cow position: chr1:9382411-9382251 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 71

Conread position: 317-471
Cow position: chr1:94253052-94253215 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 109

Conread position: 322-471
Cow position: chr1:21720028-21720185 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 330-461
Cow position: chr1:59674598-59674736 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 94

Conread position: 331-471
Cow position: chr1:18027620-18027473 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 70, 94

Conread position: 334-466
Cow position: chr1:42870090-42869951 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 69, 91

Conread position: 336-470
Cow position: chr1:72039194-72039053 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 345-471
Cow position: chr1:87516120-87515987 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 58, 79

Show alignments to all cow chromosomes.