Cow genome map

Conread name: Pig1-34D03

Conread position: 10-457
Cow position: chr11:26566229-26565777 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 295
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 46, 18

Conread position: 14-369
Cow position: chr11:35228530-35228189 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 224
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 125, 66

Conread position: 15-403
Cow position: chr11:10210474-10210079 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 42

Conread position: 16-205
Cow position: chr11:7687411-7687602 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 23, 111

Conread position: 16-323
Cow position: chr11:9581051-9580734 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 205
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 16-374
Cow position: chr11:15998388-15998747 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 46

Conread position: 16-400
Cow position: chr11:3253794-3253420 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 245
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 273, 29

Conread position: 16-417
Cow position: chr11:58133862-58134267 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 205

Conread position: 16-436
Cow position: chr11:44861035-44860606 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 161

Conread position: 16-447
Cow position: chr11:9157931-9157499 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 12

Conread position: 16-462
Cow position: chr11:26125438-26124982 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 109

Conread position: 16-462
Cow position: chr11:44157743-44157304 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 205

Conread position: 16-465
Cow position: chr11:17108196-17107734 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 208

Conread position: 16-465
Cow position: chr11:52418881-52419340 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 204

Conread position: 16-466
Cow position: chr11:30304739-30305174 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 81

Conread position: 16-469
Cow position: chr11:21466566-21467033 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 208

Conread position: 16-471
Cow position: chr11:4041571-4041118 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 42

Conread position: 16-471
Cow position: chr11:7113091-7113552 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 48

Conread position: 16-471
Cow position: chr11:8262206-8261746 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 212

Conread position: 16-471
Cow position: chr11:20921256-20920787 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 208

Conread position: 16-471
Cow position: chr11:28063180-28063634 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 153

Conread position: 16-471
Cow position: chr11:34020398-34020848 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 12

Conread position: 16-471
Cow position: chr11:36744688-36744222 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 205

Conread position: 16-471
Cow position: chr11:37477626-37477161 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 105

Conread position: 16-471
Cow position: chr11:42428829-42429291 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 69

Conread position: 16-471
Cow position: chr11:61401547-61401093 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 186

Conread position: 16-471
Cow position: chr11:75919911-75920360 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 82

Conread position: 16-472
Cow position: chr11:4271377-4270902 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 168

Conread position: 16-473
Cow position: chr11:33044627-33044160 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 13

Conread position: 16-477
Cow position: chr11:9659904-9659421 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 12

Conread position: 17-173
Cow position: chr11:17280746-17280593 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 73, 84

Conread position: 17-471
Cow position: chr11:8887656-8887200 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 107

Conread position: 18-250
Cow position: chr11:77235259-77235495 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 14, 204

Conread position: 18-340
Cow position: chr11:10218065-10217750 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 223
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 11, 83

Conread position: 18-441
Cow position: chr11:30125752-30125335 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 167

Conread position: 18-462
Cow position: chr11:12358927-12358476 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 187

Conread position: 18-462
Cow position: chr11:19102991-19102537 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 37

Conread position: 18-462
Cow position: chr11:28230254-28229804 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 205

Conread position: 18-462
Cow position: chr11:38835922-38835482 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 204

Conread position: 18-465
Cow position: chr11:32450362-32450819 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 206

Conread position: 18-469
Cow position: chr11:37093567-37093106 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-471
Cow position: chr11:1496574-1496116 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 26

Conread position: 18-471
Cow position: chr11:3492507-3492969 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 107

Conread position: 18-471
Cow position: chr11:9607080-9606620 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 159

Conread position: 18-471
Cow position: chr11:12351568-12351107 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 37

Conread position: 18-471
Cow position: chr11:15983118-15983582 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 203

Conread position: 18-471
Cow position: chr11:19064755-19064291 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 203

Conread position: 18-471
Cow position: chr11:45110855-45111327 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 205

Conread position: 18-471
Cow position: chr11:57628552-57628088 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 203

Conread position: 18-471
Cow position: chr11:63660087-63659630 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-471
Cow position: chr11:67449992-67450456 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 207

Conread position: 18-471
Cow position: chr11:67847073-67846613 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 109

Conread position: 18-472
Cow position: chr11:4028055-4027604 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 113

Conread position: 18-472
Cow position: chr11:10846939-10847401 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-472
Cow position: chr11:11987615-11988066 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 128

Conread position: 18-472
Cow position: chr11:23876799-23877261 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 204

Conread position: 18-472
Cow position: chr11:24392823-24393276 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 6

Conread position: 18-472
Cow position: chr11:29669134-29668672 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-472
Cow position: chr11:43515136-43514671 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 410

Conread position: 18-472
Cow position: chr11:72110466-72110006 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 165

Conread position: 19-462
Cow position: chr11:77729030-77728571 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 106

Conread position: 19-472
Cow position: chr11:71329140-71329603 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 93

Conread position: 20-246
Cow position: chr11:9736455-9736227 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 23, 200

Conread position: 20-338
Cow position: chr11:44895518-44895204 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 172, 8

Conread position: 20-358
Cow position: chr11:35389287-35388952 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 225
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 108, 12

Conread position: 20-406
Cow position: chr11:28073229-28073617 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 258
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 76, 8

Conread position: 20-461
Cow position: chr11:41171196-41170744 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 201

Conread position: 20-469
Cow position: chr11:28055097-28054644 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 8

Conread position: 20-471
Cow position: chr11:37492155-37491688 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 169

Conread position: 20-472
Cow position: chr11:8244205-8244663 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 104

Conread position: 20-472
Cow position: chr11:85394312-85393852 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 105

Conread position: 21-471
Cow position: chr11:17220709-17220257 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 76

Conread position: 24-471
Cow position: chr11:25527072-25527516 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 180

Conread position: 24-472
Cow position: chr11:54209119-54209571 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 200

Conread position: 25-477
Cow position: chr11:29234148-29233699 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 309
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 19, 81

Conread position: 27-202
Cow position: chr11:31414732-31414559 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 65, 143

Conread position: 28-295
Cow position: chr11:32071620-32071877 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 83, 57

Conread position: 29-463
Cow position: chr11:53287948-53287505 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 190

Conread position: 31-403
Cow position: chr11:81853113-81852749 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 11

Conread position: 31-469
Cow position: chr11:8282587-8283031 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 93

Conread position: 42-402
Cow position: chr11:10049644-10050002 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 75

Conread position: 51-324
Cow position: chr11:17924914-17924639 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 134

Conread position: 51-455
Cow position: chr11:44496069-44495660 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 75

Conread position: 70-471
Cow position: chr11:10089883-10090294 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 54

Conread position: 81-403
Cow position: chr11:66726024-66726347 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 138

Conread position: 89-250
Cow position: chr11:46962849-46962692 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 113, 84

Conread position: 105-471
Cow position: chr11:5343634-5343259 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 114

Conread position: 105-471
Cow position: chr11:37065540-37065160 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 116

Conread position: 126-471
Cow position: chr11:64045602-64045956 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 93

Conread position: 143-449
Cow position: chr11:40776921-40776606 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 79

Conread position: 146-360
Cow position: chr11:47761306-47761088 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 134
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 56, 74

Conread position: 177-469
Cow position: chr11:31414267-31413977 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 33

Conread position: 182-471
Cow position: chr11:73476968-73477266 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 40

Conread position: 222-469
Cow position: chr11:52886796-52886547 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 185
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 174, 113

Conread position: 231-471
Cow position: chr11:8519703-8519947 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 145

Conread position: 237-449
Cow position: chr11:17280578-17280362 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 242-456
Cow position: chr11:9734926-9734705 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 98, 142

Conread position: 250-471
Cow position: chr11:38505874-38505647 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 86, 10

Conread position: 284-471
Cow position: chr11:4065471-4065271 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 58, 0

Conread position: 293-471
Cow position: chr11:12093329-12093516 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 150
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 53, 132

Conread position: 296-471
Cow position: chr11:33194778-33194595 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 40, 130

Conread position: 299-467
Cow position: chr11:77235493-77235669 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 43, 127

Conread position: 299-471
Cow position: chr11:9220342-9220162 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 41, 127

Conread position: 316-471
Cow position: chr11:7316668-7316828 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 26, 65

Show alignments to all cow chromosomes.