Cow genome map
| Conread name: | Pig1-34D03 |
| Conread position: | 4-471 |
| Cow position: | chr17:20088076-20087615 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 8-383 |
| Cow position: | chr17:14308644-14308276 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 151 |
| Conread position: | 15-186 |
| Cow position: | chr17:2738040-2738216 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 16-262 |
| Cow position: | chr17:28109749-28110002 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 15, 112 |
| Conread position: | 16-403 |
| Cow position: | chr17:39933349-39933712 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 155 |
| Conread position: | 16-446 |
| Cow position: | chr17:22429819-22429387 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 207 |
| Conread position: | 16-465 |
| Cow position: | chr17:14217361-14216897 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 208 |
| Conread position: | 16-469 |
| Cow position: | chr17:6002349-6001888 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 122 |
| Conread position: | 16-470 |
| Cow position: | chr17:4081316-4081759 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 55 |
| Conread position: | 16-471 |
| Cow position: | chr17:152804-152344 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 107 |
| Conread position: | 16-471 |
| Cow position: | chr17:1383148-1382682 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 205 |
| Conread position: | 16-471 |
| Cow position: | chr17:1946639-1947101 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 208 |
| Conread position: | 16-471 |
| Cow position: | chr17:8208773-8209238 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 205 |
| Conread position: | 16-471 |
| Cow position: | chr17:15143700-15143235 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 8 |
| Conread position: | 16-471 |
| Cow position: | chr17:15157296-15156832 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 110 |
| Conread position: | 16-471 |
| Cow position: | chr17:18185861-18185403 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 16-471 |
| Cow position: | chr17:23857369-23856902 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 110 |
| Conread position: | 16-471 |
| Cow position: | chr17:27345468-27345930 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 209 |
| Conread position: | 16-471 |
| Cow position: | chr17:42264190-42264633 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 19 |
| Conread position: | 16-471 |
| Cow position: | chr17:43988201-43988665 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 308 |
| Conread position: | 16-471 |
| Cow position: | chr17:44853265-44852801 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 16-472 |
| Cow position: | chr17:11088058-11087591 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 205 |
| Conread position: | 16-472 |
| Cow position: | chr17:19269699-19269233 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 204 |
| Conread position: | 16-477 |
| Cow position: | chr17:13857110-13856631 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 212 |
| Conread position: | 16-477 |
| Cow position: | chr17:16889788-16890263 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 112 |
| Conread position: | 17-195 |
| Cow position: | chr17:3710395-3710216 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 17-469 |
| Cow position: | chr17:2588000-2588434 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 17-471 |
| Cow position: | chr17:16418174-16417706 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 211 |
| Conread position: | 17-471 |
| Cow position: | chr17:20183561-20183102 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 109 |
| Conread position: | 18-199 |
| Cow position: | chr17:11783039-11783222 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 18-205 |
| Cow position: | chr17:40804067-40804254 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 10, 81 |
| Conread position: | 18-213 |
| Cow position: | chr17:2579227-2579425 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 10, 63 |
| Conread position: | 18-249 |
| Cow position: | chr17:15370745-15370974 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 18-351 |
| Cow position: | chr17:4671865-4672196 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 35, 26 |
| Conread position: | 18-371 |
| Cow position: | chr17:22160584-22160941 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 203 |
| Conread position: | 18-403 |
| Cow position: | chr17:24780716-24781105 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-457 |
| Cow position: | chr17:16859885-16859450 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 6 |
| Conread position: | 18-462 |
| Cow position: | chr17:6259513-6259967 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 203 |
| Conread position: | 18-465 |
| Cow position: | chr17:2248913-2248458 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 169 |
| Conread position: | 18-470 |
| Cow position: | chr17:4059776-4060230 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 64 |
| Conread position: | 18-471 |
| Cow position: | chr17:228633-228176 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 18-471 |
| Cow position: | chr17:2261778-2262234 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 128 |
| Conread position: | 18-471 |
| Cow position: | chr17:6089493-6089029 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-471 |
| Cow position: | chr17:14325826-14325381 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 18-471 |
| Cow position: | chr17:15435459-15435923 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 203 |
| Conread position: | 18-471 |
| Cow position: | chr17:20666058-20665594 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-471 |
| Cow position: | chr17:24633625-24634086 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 47 |
| Conread position: | 18-471 |
| Cow position: | chr17:35591883-35592346 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 201 |
| Conread position: | 18-472 |
| Cow position: | chr17:1879764-1880227 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 6 |
| Conread position: | 18-472 |
| Cow position: | chr17:3643168-3642703 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 201 |
| Conread position: | 18-472 |
| Cow position: | chr17:13929336-13929801 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-472 |
| Cow position: | chr17:14893829-14894286 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-472 |
| Cow position: | chr17:15850066-15850530 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 98 |
| Conread position: | 18-472 |
| Cow position: | chr17:18104012-18103552 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 201 |
| Conread position: | 18-472 |
| Cow position: | chr17:25737331-25737796 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 20-465 |
| Cow position: | chr17:23324771-23324328 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 21-474 |
| Cow position: | chr17:9653784-9653321 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 199 |
| Conread position: | 23-477 |
| Cow position: | chr17:22131909-22132368 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 9 |
| Conread position: | 24-400 |
| Cow position: | chr17:4286761-4287137 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 268 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 29, 148 |
| Conread position: | 24-447 |
| Cow position: | chr17:249587-250047 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 9, 322 |
| Conread position: | 26-469 |
| Cow position: | chr17:4295042-4295474 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 129 |
| Conread position: | 26-471 |
| Cow position: | chr17:2173556-2174010 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 194 |
| Conread position: | 26-471 |
| Cow position: | chr17:2287066-2287518 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 112 |
| Conread position: | 26-471 |
| Cow position: | chr17:20401359-20401793 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 149 |
| Conread position: | 70-471 |
| Cow position: | chr17:1658847-1658434 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 268, 29 |
| Conread position: | 81-471 |
| Cow position: | chr17:18027025-18026625 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 139 |
| Conread position: | 85-459 |
| Cow position: | chr17:2555860-2556242 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 137 |
| Conread position: | 122-288 |
| Cow position: | chr17:1284007-1283847 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 81, 7 |
| Conread position: | 124-388 |
| Cow position: | chr17:12670671-12670412 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 185-465 |
| Cow position: | chr17:181201-181489 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 151, 241 |
| Conread position: | 223-472 |
| Cow position: | chr17:40804692-40804950 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 202 |
| Conread position: | 243-469 |
| Cow position: | chr17:2147072-2147302 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 247-471 |
| Cow position: | chr17:602524-602306 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 159, 89 |
| Conread position: | 266-436 |
| Cow position: | chr17:26205888-26205710 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 74, 160 |
| Conread position: | 295-471 |
| Cow position: | chr17:1283757-1283573 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 45, 130 |
| Conread position: | 316-462 |
| Cow position: | chr17:15323215-15323368 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 19, 108 |
| Conread position: | 316-471 |
| Cow position: | chr17:43952593-43952431 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 89, 112 |
| Conread position: | 317-471 |
| Cow position: | chr17:31768069-31767907 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 23, 112 |
| Conread position: | 319-471 |
| Cow position: | chr17:22557594-22557754 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 327-466 |
| Cow position: | chr17:36987690-36987546 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 78, 134 |
| Conread position: | 335-471 |
| Cow position: | chr17:34156117-34156260 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 90 |
Show alignments to all cow chromosomes.