Cow genome map
| Conread name: | Pig1-34D03 |
| Conread position: | 6-400 |
| Cow position: | chr18:18897368-18897755 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 9-397 |
| Cow position: | chr18:20832713-20833096 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 97, 15 |
| Conread position: | 14-400 |
| Cow position: | chr18:24577261-24576874 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 16-181 |
| Cow position: | chr18:32651868-32652036 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 16-301 |
| Cow position: | chr18:17992691-17992403 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 138 |
| Conread position: | 16-405 |
| Cow position: | chr18:16393770-16393382 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 160 |
| Conread position: | 16-464 |
| Cow position: | chr18:44601411-44601850 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 170 |
| Conread position: | 16-465 |
| Cow position: | chr18:9186892-9186441 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 307 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 21, 86 |
| Conread position: | 16-465 |
| Cow position: | chr18:16078574-16079051 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 228 |
| Conread position: | 16-469 |
| Cow position: | chr18:14415850-14416313 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 205 |
| Conread position: | 16-469 |
| Cow position: | chr18:16877357-16877806 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 307 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 16-469 |
| Cow position: | chr18:37504936-37505401 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 206 |
| Conread position: | 16-470 |
| Cow position: | chr18:33268712-33269164 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 144 |
| Conread position: | 16-471 |
| Cow position: | chr18:2019812-2019347 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 205 |
| Conread position: | 16-471 |
| Cow position: | chr18:2887151-2886682 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 215 |
| Conread position: | 16-471 |
| Cow position: | chr18:16533854-16534318 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 169 |
| Conread position: | 16-471 |
| Cow position: | chr18:23944500-23944035 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 112 |
| Conread position: | 16-471 |
| Cow position: | chr18:32293646-32294098 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 85 |
| Conread position: | 16-471 |
| Cow position: | chr18:33335742-33336202 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 156 |
| Conread position: | 16-471 |
| Cow position: | chr18:39748453-39748917 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 108 |
| Conread position: | 16-471 |
| Cow position: | chr18:48221748-48222218 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 16-471 |
| Cow position: | chr18:51257854-51258323 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 80 |
| Conread position: | 16-472 |
| Cow position: | chr18:28974029-28973562 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 205 |
| Conread position: | 16-472 |
| Cow position: | chr18:51480711-51481180 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 414 |
| Conread position: | 16-477 |
| Cow position: | chr18:47719694-47719236 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 63 |
| Conread position: | 16-477 |
| Cow position: | chr18:53785712-53786185 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 109 |
| Conread position: | 17-385 |
| Cow position: | chr18:43200938-43201301 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 81 |
| Conread position: | 17-471 |
| Cow position: | chr18:54044829-54044383 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 111 |
| Conread position: | 17-476 |
| Cow position: | chr18:37599655-37599195 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 111 |
| Conread position: | 18-156 |
| Cow position: | chr18:25349915-25350055 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 18-156 |
| Cow position: | chr18:37585787-37585648 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 18-258 |
| Cow position: | chr18:27986907-27987146 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 6 |
| Conread position: | 18-297 |
| Cow position: | chr18:44621635-44621917 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 203 |
| Conread position: | 18-329 |
| Cow position: | chr18:22869631-22869944 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 18-332 |
| Cow position: | chr18:35288409-35288729 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 10, 6 |
| Conread position: | 18-362 |
| Cow position: | chr18:1521008-1521352 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 6 |
| Conread position: | 18-363 |
| Cow position: | chr18:16660128-16659793 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 202 |
| Conread position: | 18-461 |
| Cow position: | chr18:41840949-41840495 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-465 |
| Cow position: | chr18:19352262-19352719 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 18-465 |
| Cow position: | chr18:33953692-33953241 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 202 |
| Conread position: | 18-468 |
| Cow position: | chr18:51660293-51660744 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 24, 444 |
| Conread position: | 18-470 |
| Cow position: | chr18:51689503-51689963 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 200 |
| Conread position: | 18-471 |
| Cow position: | chr18:11275224-11274766 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 18-471 |
| Cow position: | chr18:22602363-22602827 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-471 |
| Cow position: | chr18:33358743-33359205 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-471 |
| Cow position: | chr18:43147048-43146586 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 18-471 |
| Cow position: | chr18:47741894-47742358 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 203 |
| Conread position: | 18-471 |
| Cow position: | chr18:51341562-51342026 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 203 |
| Conread position: | 18-471 |
| Cow position: | chr18:54171967-54171524 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 107 |
| Conread position: | 18-471 |
| Cow position: | chr18:55089049-55088585 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-472 |
| Cow position: | chr18:23797527-23797988 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 39 |
| Conread position: | 18-472 |
| Cow position: | chr18:36508209-36508673 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 203 |
| Conread position: | 18-472 |
| Cow position: | chr18:40478259-40478723 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 191 |
| Conread position: | 19-472 |
| Cow position: | chr18:16176729-16176277 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 20-369 |
| Cow position: | chr18:16291924-16291584 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 92, 60 |
| Conread position: | 20-471 |
| Cow position: | chr18:6869381-6868919 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 201 |
| Conread position: | 20-471 |
| Cow position: | chr18:35335369-35335819 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 9 |
| Conread position: | 22-411 |
| Cow position: | chr18:16361342-16360960 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 85, 7 |
| Conread position: | 23-325 |
| Cow position: | chr18:48452416-48452719 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 26-471 |
| Cow position: | chr18:29236703-29237148 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 27-156 |
| Cow position: | chr18:19539987-19539859 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 27-273 |
| Cow position: | chr18:40193505-40193752 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 27-471 |
| Cow position: | chr18:51310472-51310923 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 27-472 |
| Cow position: | chr18:27838417-27837976 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 116 |
| Conread position: | 28-335 |
| Cow position: | chr18:29900206-29900501 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 195, 38 |
| Conread position: | 31-403 |
| Cow position: | chr18:54024457-54024095 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 38 |
| Conread position: | 70-471 |
| Cow position: | chr18:5980371-5980769 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 74-472 |
| Cow position: | chr18:14130322-14130725 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 122 |
| Conread position: | 105-469 |
| Cow position: | chr18:52650896-52651257 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 44 |
| Conread position: | 124-453 |
| Cow position: | chr18:114378-114711 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 152-471 |
| Cow position: | chr18:24040721-24040392 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 70 |
| Conread position: | 161-471 |
| Cow position: | chr18:51463054-51462739 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 61 |
| Conread position: | 163-454 |
| Cow position: | chr18:45958742-45959039 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 168, 183 |
| Conread position: | 163-471 |
| Cow position: | chr18:19539557-19539245 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 171-472 |
| Cow position: | chr18:32652251-32652543 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 50 |
| Conread position: | 177-471 |
| Cow position: | chr18:54269622-54269914 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 46, 93 |
| Conread position: | 210-475 |
| Cow position: | chr18:16843264-16842995 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 10 |
| Conread position: | 223-401 |
| Cow position: | chr18:18089389-18089210 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 238-462 |
| Cow position: | chr18:54003616-54003851 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 99, 28 |
| Conread position: | 264-472 |
| Cow position: | chr18:27987185-27987404 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 82, 161 |
| Conread position: | 296-471 |
| Cow position: | chr18:17992264-17992081 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 129 |
| Conread position: | 308-473 |
| Cow position: | chr18:29763539-29763707 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 323-471 |
| Cow position: | chr18:56462719-56462563 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.