Cow genome map

Conread name: Pig1-34D03

Conread position: 6-471
Cow position: chr21:2674682-2674192 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 24

Conread position: 13-467
Cow position: chr21:4590037-4589576 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 16

Conread position: 15-353
Cow position: chr21:2769509-2769166 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 207

Conread position: 16-192
Cow position: chr21:17572875-17573053 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 12, 0

Conread position: 16-312
Cow position: chr21:2716730-2716429 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 112

Conread position: 16-397
Cow position: chr21:21947850-21947465 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 262
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 17, 184

Conread position: 16-403
Cow position: chr21:4222736-4222348 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 208

Conread position: 16-434
Cow position: chr21:3426440-3426868 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 411

Conread position: 16-460
Cow position: chr21:23860734-23861187 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 156

Conread position: 16-462
Cow position: chr21:2510606-2511062 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 120

Conread position: 16-462
Cow position: chr21:30599964-30599515 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 39

Conread position: 16-469
Cow position: chr21:3778719-3779184 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 206

Conread position: 16-471
Cow position: chr21:4076799-4077257 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 126

Conread position: 16-471
Cow position: chr21:7267585-7267117 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 13

Conread position: 16-471
Cow position: chr21:12056046-12055581 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 153

Conread position: 16-471
Cow position: chr21:13124044-13123586 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 145

Conread position: 16-471
Cow position: chr21:26823276-26822814 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 307
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 74, 29

Conread position: 16-471
Cow position: chr21:34292970-34293435 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 112

Conread position: 16-471
Cow position: chr21:35596319-35596786 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 208

Conread position: 16-472
Cow position: chr21:10566629-10567089 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 39

Conread position: 16-472
Cow position: chr21:48116059-48116522 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 185

Conread position: 16-476
Cow position: chr21:20744798-20744342 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 29

Conread position: 17-471
Cow position: chr21:11453701-11453236 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 204

Conread position: 18-213
Cow position: chr21:1190998-1191203 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 18-259
Cow position: chr21:27708718-27708963 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 181
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 10, 204

Conread position: 18-300
Cow position: chr21:3615248-3615534 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-324
Cow position: chr21:33251348-33251657 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-393
Cow position: chr21:33755261-33755636 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 111

Conread position: 18-462
Cow position: chr21:10850036-10850490 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-469
Cow position: chr21:31559699-31559238 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 171

Conread position: 18-470
Cow position: chr21:2530170-2529709 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 215

Conread position: 18-470
Cow position: chr21:46915543-46916007 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 207

Conread position: 18-471
Cow position: chr21:2416192-2416638 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 10

Conread position: 18-471
Cow position: chr21:2476554-2476121 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 107

Conread position: 18-471
Cow position: chr21:2789038-2788573 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 204

Conread position: 18-471
Cow position: chr21:4090607-4091069 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 107

Conread position: 18-471
Cow position: chr21:4456785-4457246 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 33

Conread position: 18-471
Cow position: chr21:11505545-11506016 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 6

Conread position: 18-471
Cow position: chr21:23811832-23812295 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-471
Cow position: chr21:26638507-26638045 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 107

Conread position: 18-471
Cow position: chr21:37044869-37045330 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 18-471
Cow position: chr21:39425019-39425483 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 206

Conread position: 18-472
Cow position: chr21:145875-146343 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 207

Conread position: 18-472
Cow position: chr21:30561758-30562223 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 203

Conread position: 20-403
Cow position: chr21:47939442-47939816 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 26

Conread position: 21-289
Cow position: chr21:26819061-26818791 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 199

Conread position: 21-466
Cow position: chr21:2541456-2540998 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 202

Conread position: 21-469
Cow position: chr21:36714591-36715046 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 111

Conread position: 21-471
Cow position: chr21:1292219-1291771 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 105

Conread position: 24-448
Cow position: chr21:47948071-47948505 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 197

Conread position: 25-335
Cow position: chr21:34259256-34258954 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 100

Conread position: 27-471
Cow position: chr21:358983-359453 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 82

Conread position: 29-448
Cow position: chr21:9891571-9892000 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 75

Conread position: 30-474
Cow position: chr21:2883779-2883325 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 190

Conread position: 42-398
Cow position: chr21:13281884-13282232 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 230
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 95, 46

Conread position: 43-469
Cow position: chr21:4183509-4183935 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 22

Conread position: 46-472
Cow position: chr21:27282372-27282806 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 174

Conread position: 48-471
Cow position: chr21:6339553-6339986 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 172

Conread position: 53-403
Cow position: chr21:8678368-8678015 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 167

Conread position: 109-462
Cow position: chr21:40271628-40271266 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 113

Conread position: 161-471
Cow position: chr21:3798270-3797951 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 61

Conread position: 163-469
Cow position: chr21:18820313-18820012 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 57

Conread position: 185-471
Cow position: chr21:2502019-2502310 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 217
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 146, 35

Conread position: 222-469
Cow position: chr21:28967-29187 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 180
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 223-462
Cow position: chr21:1191327-1191574 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 202

Conread position: 236-471
Cow position: chr21:26650218-26650461 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 185
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 104, 193

Conread position: 246-472
Cow position: chr21:30226206-30226440 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 144
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 94, 180

Conread position: 259-472
Cow position: chr21:35143968-35144177 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 87, 119

Conread position: 303-471
Cow position: chr21:9869995-9870166 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 101, 32

Conread position: 316-470
Cow position: chr21:3615569-3615730 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 24, 108

Conread position: 322-472
Cow position: chr21:34258727-34258568 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 24, 104

Conread position: 351-471
Cow position: chr21:2716425-2716298 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 54, 73

Show alignments to all cow chromosomes.