Cow genome map
| Conread name: | Pig1-34D03 |
| Conread position: | 6-349 |
| Cow position: | chr28:15950797-15951142 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 162 |
| Conread position: | 6-400 |
| Cow position: | chr28:24306845-24306453 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 90, 18 |
| Conread position: | 6-471 |
| Cow position: | chr28:24587249-24587726 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 216 |
| Conread position: | 8-471 |
| Cow position: | chr28:13441059-13440585 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 213 |
| Conread position: | 15-471 |
| Cow position: | chr28:2591741-2592206 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 16-153 |
| Cow position: | chr28:5796644-5796780 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 73, 8 |
| Conread position: | 16-212 |
| Cow position: | chr28:15681716-15681911 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 76, 110 |
| Conread position: | 16-241 |
| Cow position: | chr28:17330698-17330473 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 16-323 |
| Cow position: | chr28:24652114-24652420 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 197 |
| Conread position: | 16-464 |
| Cow position: | chr28:10582162-10581702 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 207 |
| Conread position: | 16-469 |
| Cow position: | chr28:1387568-1387111 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 204 |
| Conread position: | 16-469 |
| Cow position: | chr28:24667404-24667868 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 133 |
| Conread position: | 16-469 |
| Cow position: | chr28:33252143-33252601 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 130 |
| Conread position: | 16-471 |
| Cow position: | chr28:1952956-1953421 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 184 |
| Conread position: | 16-471 |
| Cow position: | chr28:4380994-4380553 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 16-471 |
| Cow position: | chr28:7901177-7901653 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 16-471 |
| Cow position: | chr28:8721619-8721158 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 52 |
| Conread position: | 16-471 |
| Cow position: | chr28:9155462-9154994 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 112 |
| Conread position: | 16-472 |
| Cow position: | chr28:8378390-8378861 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 205 |
| Conread position: | 17-472 |
| Cow position: | chr28:12410383-12409933 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 81 |
| Conread position: | 18-180 |
| Cow position: | chr28:5752049-5751884 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 18-181 |
| Cow position: | chr28:1168336-1168174 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 63 |
| Conread position: | 18-181 |
| Cow position: | chr28:34593671-34593832 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 15, 80 |
| Conread position: | 18-193 |
| Cow position: | chr28:2989854-2989684 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 18-369 |
| Cow position: | chr28:26426446-26426099 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 187 |
| Conread position: | 18-442 |
| Cow position: | chr28:15920638-15920202 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-457 |
| Cow position: | chr28:5565689-5566131 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 187 |
| Conread position: | 18-462 |
| Cow position: | chr28:1504683-1505134 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 80 |
| Conread position: | 18-462 |
| Cow position: | chr28:2083432-2083878 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 18-462 |
| Cow position: | chr28:14705844-14705389 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 360 |
| Conread position: | 18-463 |
| Cow position: | chr28:22261323-22260867 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 203 |
| Conread position: | 18-471 |
| Cow position: | chr28:5812538-5812980 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 10 |
| Conread position: | 18-471 |
| Cow position: | chr28:6780501-6780042 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 74 |
| Conread position: | 18-471 |
| Cow position: | chr28:7822085-7822549 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 203 |
| Conread position: | 18-471 |
| Cow position: | chr28:9953963-9954424 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 82 |
| Conread position: | 18-471 |
| Cow position: | chr28:14750376-14750838 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 164 |
| Conread position: | 18-472 |
| Cow position: | chr28:3192963-3192499 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 202 |
| Conread position: | 18-472 |
| Cow position: | chr28:5114972-5114519 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 206 |
| Conread position: | 18-472 |
| Cow position: | chr28:13459799-13460262 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 107 |
| Conread position: | 18-472 |
| Cow position: | chr28:15378164-15377700 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 203 |
| Conread position: | 18-472 |
| Cow position: | chr28:17388309-17388774 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-472 |
| Cow position: | chr28:18520631-18520167 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 18-472 |
| Cow position: | chr28:32792551-32792088 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 18-473 |
| Cow position: | chr28:782226-782688 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 20-472 |
| Cow position: | chr28:7001820-7002282 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 21-215 |
| Cow position: | chr28:29819403-29819597 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 8 |
| Conread position: | 21-472 |
| Cow position: | chr28:1815035-1814575 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 8 |
| Conread position: | 21-472 |
| Cow position: | chr28:12150147-12150596 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 75 |
| Conread position: | 23-464 |
| Cow position: | chr28:17667677-17667229 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 23-471 |
| Cow position: | chr28:10619273-10618823 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 75 |
| Conread position: | 23-471 |
| Cow position: | chr28:34648775-34649235 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 164 |
| Conread position: | 24-355 |
| Cow position: | chr28:17195520-17195210 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 179, 29 |
| Conread position: | 25-471 |
| Cow position: | chr28:21358849-21359293 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 83 |
| Conread position: | 27-316 |
| Cow position: | chr28:34324666-34324940 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 27-356 |
| Cow position: | chr28:7817057-7817373 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 8, 99 |
| Conread position: | 27-469 |
| Cow position: | chr28:22065899-22065455 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 302 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 31-326 |
| Cow position: | chr28:6657466-6657167 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 22, 88 |
| Conread position: | 41-462 |
| Cow position: | chr28:7740347-7740763 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 19 |
| Conread position: | 42-213 |
| Cow position: | chr28:15035643-15035470 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 43-412 |
| Cow position: | chr28:17935184-17934813 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 52-471 |
| Cow position: | chr28:7790435-7789993 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 73 |
| Conread position: | 69-470 |
| Cow position: | chr28:9137169-9136761 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 86-282 |
| Cow position: | chr28:22233791-22233595 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 117, 133 |
| Conread position: | 86-470 |
| Cow position: | chr28:2724993-2724602 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 133 |
| Conread position: | 171-462 |
| Cow position: | chr28:34593961-34594261 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 171-469 |
| Cow position: | chr28:1167899-1167592 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 171-472 |
| Cow position: | chr28:5751724-5751413 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 197-462 |
| Cow position: | chr28:29819744-29820016 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 23 |
| Conread position: | 224-469 |
| Cow position: | chr28:1931948-1931695 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 224-477 |
| Cow position: | chr28:2846136-2845875 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 122, 95 |
| Conread position: | 225-471 |
| Cow position: | chr28:5797470-5797722 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 73 |
| Conread position: | 237-471 |
| Cow position: | chr28:17324301-17324053 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 269-471 |
| Cow position: | chr28:485481-485271 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 276-447 |
| Cow position: | chr28:22828104-22828283 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 278-471 |
| Cow position: | chr28:15682213-15682403 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 14 |
| Conread position: | 293-469 |
| Cow position: | chr28:10071090-10071269 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 293-471 |
| Cow position: | chr28:22233292-22233108 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 80 |
| Conread position: | 313-471 |
| Cow position: | chr28:13490276-13490442 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 112 |
| Conread position: | 316-469 |
| Cow position: | chr28:5937609-5937766 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 106 |
| Conread position: | 320-471 |
| Cow position: | chr28:30805555-30805396 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 106 |
| Conread position: | 325-471 |
| Cow position: | chr28:6539124-6538970 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 101 |
Show alignments to all cow chromosomes.