Cow genome map
| Conread name: | Pig1-34D03 |
| Conread position: | 4-471 |
| Cow position: | chr29:18857165-18856687 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 217 |
| Conread position: | 4-471 |
| Cow position: | chr29:34925256-34925736 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 288, 427 |
| Conread position: | 8-403 |
| Cow position: | chr29:32315824-32316223 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 213 |
| Conread position: | 16-201 |
| Cow position: | chr29:31121594-31121784 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 16-250 |
| Cow position: | chr29:34609161-34608929 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 183 |
| Conread position: | 16-354 |
| Cow position: | chr29:24198831-24198488 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 16-454 |
| Cow position: | chr29:10848322-10847852 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 210 |
| Conread position: | 16-455 |
| Cow position: | chr29:30811324-30811763 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 65 |
| Conread position: | 16-462 |
| Cow position: | chr29:15950391-15949943 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 169 |
| Conread position: | 16-462 |
| Cow position: | chr29:32539599-32540058 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 208 |
| Conread position: | 16-464 |
| Cow position: | chr29:34800018-34799558 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 205 |
| Conread position: | 16-466 |
| Cow position: | chr29:45459508-45459968 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 89 |
| Conread position: | 16-469 |
| Cow position: | chr29:19623455-19622992 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 135 |
| Conread position: | 16-470 |
| Cow position: | chr29:104364-104820 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 172 |
| Conread position: | 16-471 |
| Cow position: | chr29:11049073-11049535 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 152 |
| Conread position: | 16-471 |
| Cow position: | chr29:15895059-15894593 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 205 |
| Conread position: | 16-471 |
| Cow position: | chr29:21543577-21543112 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 209 |
| Conread position: | 16-471 |
| Cow position: | chr29:35296666-35297131 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 204 |
| Conread position: | 16-472 |
| Cow position: | chr29:2689694-2690158 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 110 |
| Conread position: | 16-472 |
| Cow position: | chr29:2841576-2841115 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 205 |
| Conread position: | 16-472 |
| Cow position: | chr29:10648456-10647993 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 82 |
| Conread position: | 16-477 |
| Cow position: | chr29:27040971-27040507 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 203 |
| Conread position: | 16-477 |
| Cow position: | chr29:35196466-35196929 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 51 |
| Conread position: | 17-198 |
| Cow position: | chr29:12796675-12796498 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 145 |
| Conread position: | 17-469 |
| Cow position: | chr29:1715041-1715495 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 107 |
| Conread position: | 18-310 |
| Cow position: | chr29:31180917-31181212 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 203 |
| Conread position: | 18-326 |
| Cow position: | chr29:21246365-21246674 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 6 |
| Conread position: | 18-338 |
| Cow position: | chr29:28060872-28060548 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 204 |
| Conread position: | 18-376 |
| Cow position: | chr29:15969354-15968996 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 18-381 |
| Cow position: | chr29:16109523-16109887 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 140 |
| Conread position: | 18-386 |
| Cow position: | chr29:13853224-13852860 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 6 |
| Conread position: | 18-462 |
| Cow position: | chr29:11855390-11855850 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 19, 166 |
| Conread position: | 18-462 |
| Cow position: | chr29:39079912-39079464 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 187 |
| Conread position: | 18-466 |
| Cow position: | chr29:7431422-7430967 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-469 |
| Cow position: | chr29:10824162-10823714 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 188 |
| Conread position: | 18-469 |
| Cow position: | chr29:19652902-19653363 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 132 |
| Conread position: | 18-469 |
| Cow position: | chr29:43322356-43322810 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 6 |
| Conread position: | 18-471 |
| Cow position: | chr29:16769926-16770380 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 80 |
| Conread position: | 18-471 |
| Cow position: | chr29:27250541-27250085 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 203 |
| Conread position: | 18-472 |
| Cow position: | chr29:48682-48222 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 18-472 |
| Cow position: | chr29:2099638-2100103 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 203 |
| Conread position: | 18-472 |
| Cow position: | chr29:6266700-6266243 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 202 |
| Conread position: | 18-472 |
| Cow position: | chr29:26165028-26164564 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 202 |
| Conread position: | 19-319 |
| Cow position: | chr29:21427260-21426961 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 202 |
| Conread position: | 19-471 |
| Cow position: | chr29:5957398-5957860 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 201 |
| Conread position: | 20-461 |
| Cow position: | chr29:14013270-14013711 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 9 |
| Conread position: | 20-461 |
| Cow position: | chr29:14073141-14072700 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 9 |
| Conread position: | 20-471 |
| Cow position: | chr29:610815-610355 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 113 |
| Conread position: | 20-472 |
| Cow position: | chr29:16022328-16022788 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 20-472 |
| Cow position: | chr29:25932746-25932286 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 20-472 |
| Cow position: | chr29:40503181-40502724 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 9 |
| Conread position: | 21-472 |
| Cow position: | chr29:23975634-23976098 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 123 |
| Conread position: | 23-403 |
| Cow position: | chr29:17662722-17663086 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 158 |
| Conread position: | 24-471 |
| Cow position: | chr29:2750593-2750164 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 75 |
| Conread position: | 24-472 |
| Cow position: | chr29:20250961-20251417 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 5 |
| Conread position: | 29-471 |
| Cow position: | chr29:7840602-7841053 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 197 |
| Conread position: | 30-400 |
| Cow position: | chr29:32948948-32949323 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 50, 112 |
| Conread position: | 31-326 |
| Cow position: | chr29:39313782-39313487 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 13 |
| Conread position: | 31-477 |
| Cow position: | chr29:43366189-43365737 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 93 |
| Conread position: | 32-471 |
| Cow position: | chr29:670247-669800 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 190 |
| Conread position: | 41-469 |
| Cow position: | chr29:38226819-38227234 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 41-471 |
| Cow position: | chr29:19884887-19885327 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 179 |
| Conread position: | 56-471 |
| Cow position: | chr29:27981085-27980662 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 164 |
| Conread position: | 62-308 |
| Cow position: | chr29:43791021-43791267 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 141, 8 |
| Conread position: | 68-308 |
| Cow position: | chr29:5983335-5983094 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 24, 56 |
| Conread position: | 76-472 |
| Cow position: | chr29:14585780-14586180 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 144 |
| Conread position: | 89-362 |
| Cow position: | chr29:13648284-13648544 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 39 |
| Conread position: | 90-472 |
| Cow position: | chr29:45587478-45587102 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 114 |
| Conread position: | 136-462 |
| Cow position: | chr29:42650198-42650534 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 86 |
| Conread position: | 136-462 |
| Cow position: | chr29:42802058-42802394 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 86 |
| Conread position: | 145-461 |
| Cow position: | chr29:2466414-2466087 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 77 |
| Conread position: | 149-465 |
| Cow position: | chr29:13581998-13582319 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 73 |
| Conread position: | 160-470 |
| Cow position: | chr29:9643821-9643500 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 161-471 |
| Cow position: | chr29:803413-803099 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 185-471 |
| Cow position: | chr29:12796400-12796125 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 23 |
| Conread position: | 210-462 |
| Cow position: | chr29:410536-410277 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 10 |
| Conread position: | 314-472 |
| Cow position: | chr29:21426932-21426772 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 92 |
Show alignments to all cow chromosomes.