Cow genome map
| Conread name: | Pig1-39B02 |
| Conread position: | 207-431 |
| Cow position: | chr20:14755568-14755790 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 85 |
| Conread position: | 210-418 |
| Cow position: | chr20:17251985-17251780 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 210-422 |
| Cow position: | chr20:37358126-37357915 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 124, 17 |
| Conread position: | 211-413 |
| Cow position: | chr20:16977570-16977776 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 106, 31 |
| Conread position: | 211-421 |
| Cow position: | chr20:12420353-12420558 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 115, 21 |
| Conread position: | 214-399 |
| Cow position: | chr20:8245982-8245801 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 110, 29 |
| Conread position: | 214-420 |
| Cow position: | chr20:10200612-10200407 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 221-415 |
| Cow position: | chr20:7425940-7426131 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 222-418 |
| Cow position: | chr20:39398742-39398544 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 12, 65 |
| Conread position: | 222-441 |
| Cow position: | chr20:13269872-13269662 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 223-407 |
| Cow position: | chr20:22012646-22012470 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 226-418 |
| Cow position: | chr20:24097251-24097064 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 227-415 |
| Cow position: | chr20:40177498-40177311 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 64 |
| Conread position: | 227-424 |
| Cow position: | chr20:25464793-25464988 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 56 |
| Conread position: | 227-429 |
| Cow position: | chr20:20158386-20158188 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 16, 61 |
| Conread position: | 228-379 |
| Cow position: | chr20:11368112-11368260 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 228-418 |
| Cow position: | chr20:24314784-24314970 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 228-418 |
| Cow position: | chr20:26996786-26996593 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 93, 58 |
| Conread position: | 228-419 |
| Cow position: | chr20:38061521-38061704 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 228-424 |
| Cow position: | chr20:21325576-21325383 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 228-425 |
| Cow position: | chr20:2298541-2298733 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 228-429 |
| Cow position: | chr20:14807134-14806939 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 228-442 |
| Cow position: | chr20:26040845-26041058 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 103, 65 |
| Conread position: | 230-416 |
| Cow position: | chr20:13805565-13805381 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 155, 13 |
| Conread position: | 230-424 |
| Cow position: | chr20:14980257-14980452 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 160, 62 |
| Conread position: | 230-442 |
| Cow position: | chr20:36312258-36312468 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 231-364 |
| Cow position: | chr20:2069882-2070015 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 100, 59 |
| Conread position: | 231-417 |
| Cow position: | chr20:3255284-3255100 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 231-429 |
| Cow position: | chr20:28605455-28605262 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 232-390 |
| Cow position: | chr20:34881155-34881306 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 232-416 |
| Cow position: | chr20:27407647-27407822 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 173, 33 |
| Conread position: | 232-418 |
| Cow position: | chr20:19746219-19746034 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 232-421 |
| Cow position: | chr20:4931327-4931146 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 232-421 |
| Cow position: | chr20:7438608-7438791 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 54 |
| Conread position: | 232-421 |
| Cow position: | chr20:8578498-8578309 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 108, 25 |
| Conread position: | 232-421 |
| Cow position: | chr20:38090164-38089973 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 88, 58 |
| Conread position: | 232-443 |
| Cow position: | chr20:34097700-34097917 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 51 |
| Conread position: | 233-390 |
| Cow position: | chr20:23506185-23506026 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 12, 58 |
| Conread position: | 233-417 |
| Cow position: | chr20:12581709-12581890 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 233-418 |
| Cow position: | chr20:39016622-39016809 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 233-432 |
| Cow position: | chr20:6240273-6240471 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 234-353 |
| Cow position: | chr20:1999630-1999513 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 234-395 |
| Cow position: | chr20:38430773-38430934 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 131, 52 |
| Conread position: | 234-418 |
| Cow position: | chr20:18379623-18379442 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 234-425 |
| Cow position: | chr20:20967565-20967377 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 234-429 |
| Cow position: | chr20:28982945-28982754 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 234-437 |
| Cow position: | chr20:27315223-27315019 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 235-406 |
| Cow position: | chr20:10956554-10956389 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 235-421 |
| Cow position: | chr20:42166544-42166719 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 235-443 |
| Cow position: | chr20:22923159-22922957 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 236-421 |
| Cow position: | chr20:32847586-32847405 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 239-418 |
| Cow position: | chr20:3148922-3148747 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 242-415 |
| Cow position: | chr20:24491789-24491962 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 126, 46 |
| Conread position: | 242-416 |
| Cow position: | chr20:22065299-22065131 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 242-416 |
| Cow position: | chr20:25009395-25009567 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 242-421 |
| Cow position: | chr20:398074-398246 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 242-421 |
| Cow position: | chr20:4891880-4892059 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 84, 48 |
| Conread position: | 242-421 |
| Cow position: | chr20:19635940-19636116 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 242-421 |
| Cow position: | chr20:23846427-23846605 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 151, 48 |
| Conread position: | 242-424 |
| Cow position: | chr20:4755596-4755777 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 242-424 |
| Cow position: | chr20:19201772-19201588 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 46 |
| Conread position: | 242-428 |
| Cow position: | chr20:8556032-8556216 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 242-430 |
| Cow position: | chr20:10209045-10208860 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 242-432 |
| Cow position: | chr20:34202880-34202684 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 118 |
| Conread position: | 242-441 |
| Cow position: | chr20:11751892-11751695 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 110, 48 |
| Conread position: | 243-411 |
| Cow position: | chr20:26387693-26387531 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 243-432 |
| Cow position: | chr20:14620069-14620254 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 125, 42 |
| Conread position: | 244-421 |
| Cow position: | chr20:12126065-12126244 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 39 |
| Conread position: | 247-429 |
| Cow position: | chr20:12239456-12239628 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 248-421 |
| Cow position: | chr20:35444874-35445043 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 20 |
| Conread position: | 251-415 |
| Cow position: | chr20:25161902-25162059 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 251-429 |
| Cow position: | chr20:5702951-5702776 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 251-436 |
| Cow position: | chr20:27323498-27323310 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 75, 34 |
| Conread position: | 252-395 |
| Cow position: | chr20:12033398-12033535 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 252-421 |
| Cow position: | chr20:19834603-19834770 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 80, 33 |
| Conread position: | 252-421 |
| Cow position: | chr20:24070030-24069866 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 81, 13 |
| Conread position: | 254-408 |
| Cow position: | chr20:2819774-2819616 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 274-416 |
| Cow position: | chr20:630730-630589 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 275-421 |
| Cow position: | chr20:31746428-31746576 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 279-418 |
| Cow position: | chr20:32463324-32463461 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 279-422 |
| Cow position: | chr20:19060639-19060777 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 307-421 |
| Cow position: | chr20:21815735-21815621 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.