Cow genome map
| Conread name: | Pig1-39B02 |
| Conread position: | 200-421 |
| Cow position: | chr24:27607895-27608105 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 201-418 |
| Cow position: | chr24:20364206-20364414 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 201-432 |
| Cow position: | chr24:22133385-22133153 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 7, 81 |
| Conread position: | 210-418 |
| Cow position: | chr24:37823720-37823523 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 214-417 |
| Cow position: | chr24:16510168-16509974 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 214-418 |
| Cow position: | chr24:27725817-27726016 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 112, 10 |
| Conread position: | 214-421 |
| Cow position: | chr24:5142137-5141935 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 90, 53 |
| Conread position: | 214-427 |
| Cow position: | chr24:27553299-27553082 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 70 |
| Conread position: | 227-390 |
| Cow position: | chr24:24136222-24136379 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 227-399 |
| Cow position: | chr24:6887194-6887023 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 65 |
| Conread position: | 227-418 |
| Cow position: | chr24:3166005-3165814 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 106, 36 |
| Conread position: | 228-418 |
| Cow position: | chr24:230465-230279 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 111, 62 |
| Conread position: | 228-418 |
| Cow position: | chr24:7757954-7757768 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 228-419 |
| Cow position: | chr24:19187118-19186933 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 56 |
| Conread position: | 228-421 |
| Cow position: | chr24:2402194-2402375 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 228-421 |
| Cow position: | chr24:17311045-17311224 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 228-421 |
| Cow position: | chr24:32890863-32891051 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 228-440 |
| Cow position: | chr24:358555-358340 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 86, 58 |
| Conread position: | 228-460 |
| Cow position: | chr24:3412866-3412632 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 192, 62 |
| Conread position: | 229-418 |
| Cow position: | chr24:18356872-18357056 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 29 |
| Conread position: | 229-420 |
| Cow position: | chr24:27285008-27284813 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 88, 57 |
| Conread position: | 230-422 |
| Cow position: | chr24:40301344-40301152 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 61 |
| Conread position: | 231-417 |
| Cow position: | chr24:44987189-44987378 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 231-418 |
| Cow position: | chr24:2380135-2379948 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 232-408 |
| Cow position: | chr24:28255883-28256053 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 232-415 |
| Cow position: | chr24:10499399-10499214 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 89, 58 |
| Conread position: | 232-416 |
| Cow position: | chr24:1269958-1269784 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 232-418 |
| Cow position: | chr24:18474548-18474733 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 95, 54 |
| Conread position: | 232-418 |
| Cow position: | chr24:18484811-18484998 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 232-442 |
| Cow position: | chr24:39910850-39911061 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 92, 49 |
| Conread position: | 233-418 |
| Cow position: | chr24:21834783-21834963 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 233-418 |
| Cow position: | chr24:30313849-30314030 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 104, 53 |
| Conread position: | 233-424 |
| Cow position: | chr24:162191-161993 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 233-429 |
| Cow position: | chr24:27713230-27713420 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 234-432 |
| Cow position: | chr24:17104393-17104588 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 235-425 |
| Cow position: | chr24:43028150-43028342 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 93, 52 |
| Conread position: | 236-399 |
| Cow position: | chr24:36286745-36286584 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 236-415 |
| Cow position: | chr24:15289004-15288826 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 96, 54 |
| Conread position: | 236-424 |
| Cow position: | chr24:2992703-2992890 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 81, 47 |
| Conread position: | 239-429 |
| Cow position: | chr24:25122510-25122329 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 240-435 |
| Cow position: | chr24:18374937-18374747 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 163, 53 |
| Conread position: | 242-410 |
| Cow position: | chr24:24091163-24091336 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 45 |
| Conread position: | 242-413 |
| Cow position: | chr24:30325611-30325783 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 133, 48 |
| Conread position: | 242-415 |
| Cow position: | chr24:30236043-30235872 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 82, 44 |
| Conread position: | 242-418 |
| Cow position: | chr24:11887324-11887156 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 242-418 |
| Cow position: | chr24:28510962-28510793 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 242-418 |
| Cow position: | chr24:29984819-29984988 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 242-421 |
| Cow position: | chr24:27940457-27940628 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 112, 44 |
| Conread position: | 242-421 |
| Cow position: | chr24:36775600-36775784 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 242-421 |
| Cow position: | chr24:42175696-42175523 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 166, 48 |
| Conread position: | 242-429 |
| Cow position: | chr24:37974812-37974996 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 242-432 |
| Cow position: | chr24:27844362-27844546 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 242-439 |
| Cow position: | chr24:7275869-7275671 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 168, 36 |
| Conread position: | 243-405 |
| Cow position: | chr24:21656580-21656415 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 86, 47 |
| Conread position: | 246-412 |
| Cow position: | chr24:37651888-37651727 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 246-417 |
| Cow position: | chr24:5360878-5360716 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 247-421 |
| Cow position: | chr24:10219219-10219392 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 39 |
| Conread position: | 247-429 |
| Cow position: | chr24:24490859-24491032 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 249-432 |
| Cow position: | chr24:43371407-43371226 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 251-417 |
| Cow position: | chr24:29561417-29561576 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 251-424 |
| Cow position: | chr24:39523288-39523459 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 252-399 |
| Cow position: | chr24:27412954-27413096 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 252-421 |
| Cow position: | chr24:31816736-31816571 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 252-421 |
| Cow position: | chr24:41916418-41916252 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 252-441 |
| Cow position: | chr24:33098311-33098499 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 31 |
| Conread position: | 254-415 |
| Cow position: | chr24:28496423-28496583 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 254-418 |
| Cow position: | chr24:20874839-20874678 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 279-418 |
| Cow position: | chr24:31359455-31359317 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 39 |
| Conread position: | 302-421 |
| Cow position: | chr24:28043087-28042968 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 304-418 |
| Cow position: | chr24:5754945-5754832 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 307-442 |
| Cow position: | chr24:39791649-39791514 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 117 |
Show alignments to all cow chromosomes.