Cow genome map
| Conread name: | Pig1-39B02 |
| Conread position: | 162-417 |
| Cow position: | chr27:7343749-7343493 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 21, 8 |
| Conread position: | 172-429 |
| Cow position: | chr27:299683-299434 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 10 |
| Conread position: | 177-418 |
| Cow position: | chr27:23918328-23918104 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 195-416 |
| Cow position: | chr27:23957236-23957455 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 195-418 |
| Cow position: | chr27:27529100-27528884 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 39, 7 |
| Conread position: | 196-442 |
| Cow position: | chr27:23560310-23560072 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 206-418 |
| Cow position: | chr27:26323168-26323385 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 206-453 |
| Cow position: | chr27:8630146-8629900 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 212-421 |
| Cow position: | chr27:24223684-24223891 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 31, 57 |
| Conread position: | 214-413 |
| Cow position: | chr27:26226558-26226359 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 79 |
| Conread position: | 214-416 |
| Cow position: | chr27:7425453-7425254 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 214-417 |
| Cow position: | chr27:7412128-7412328 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 214-421 |
| Cow position: | chr27:426703-426908 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 118, 71 |
| Conread position: | 223-421 |
| Cow position: | chr27:15409282-15409097 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 224-407 |
| Cow position: | chr27:11528671-11528856 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 226-387 |
| Cow position: | chr27:22150948-22150789 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 226-450 |
| Cow position: | chr27:13411623-13411399 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 200, 99 |
| Conread position: | 227-402 |
| Cow position: | chr27:29614788-29614961 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 105, 57 |
| Conread position: | 227-416 |
| Cow position: | chr27:16514101-16513926 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 227-421 |
| Cow position: | chr27:20897274-20897086 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 228-348 |
| Cow position: | chr27:26315394-26315275 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 9, 63 |
| Conread position: | 228-409 |
| Cow position: | chr27:31153807-31153630 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 145, 21 |
| Conread position: | 228-418 |
| Cow position: | chr27:23594063-23594257 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 59 |
| Conread position: | 228-421 |
| Cow position: | chr27:19576576-19576384 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 58 |
| Conread position: | 228-424 |
| Cow position: | chr27:18435385-18435191 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 7, 64 |
| Conread position: | 228-429 |
| Cow position: | chr27:31210296-31210494 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 10, 63 |
| Conread position: | 228-452 |
| Cow position: | chr27:12284740-12284964 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 149 |
| Conread position: | 229-382 |
| Cow position: | chr27:24952204-24952054 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 229-390 |
| Cow position: | chr27:21448076-21447921 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 229-408 |
| Cow position: | chr27:22748079-22748254 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 12 |
| Conread position: | 229-438 |
| Cow position: | chr27:14670632-14670423 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 56 |
| Conread position: | 229-442 |
| Cow position: | chr27:19452745-19452961 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 232-406 |
| Cow position: | chr27:28062443-28062273 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 160, 58 |
| Conread position: | 232-415 |
| Cow position: | chr27:3498307-3498484 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 43 |
| Conread position: | 232-418 |
| Cow position: | chr27:27460827-27460636 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 57, 151 |
| Conread position: | 232-419 |
| Cow position: | chr27:6106458-6106641 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 98, 35 |
| Conread position: | 232-422 |
| Cow position: | chr27:18491308-18491496 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 232-431 |
| Cow position: | chr27:4398734-4398542 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 233-413 |
| Cow position: | chr27:23477698-23477877 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 233-432 |
| Cow position: | chr27:4944754-4944564 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 234-422 |
| Cow position: | chr27:12459037-12459226 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 10, 54 |
| Conread position: | 234-442 |
| Cow position: | chr27:21951227-21951018 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 235-409 |
| Cow position: | chr27:22220304-22220481 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 89, 55 |
| Conread position: | 236-424 |
| Cow position: | chr27:5539937-5539753 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 107, 47 |
| Conread position: | 237-416 |
| Cow position: | chr27:29494142-29493966 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 242-384 |
| Cow position: | chr27:2934269-2934406 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 242-406 |
| Cow position: | chr27:178624-178787 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 242-415 |
| Cow position: | chr27:15669013-15668838 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 88, 48 |
| Conread position: | 242-415 |
| Cow position: | chr27:31004703-31004868 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 242-417 |
| Cow position: | chr27:17397690-17397519 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 242-418 |
| Cow position: | chr27:20325118-20325287 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 242-421 |
| Cow position: | chr27:13204226-13204398 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 242-425 |
| Cow position: | chr27:15453974-15454154 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 160, 30 |
| Conread position: | 242-437 |
| Cow position: | chr27:11133849-11134041 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 242-451 |
| Cow position: | chr27:9253351-9253149 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 242-453 |
| Cow position: | chr27:1067337-1067540 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 202, 34 |
| Conread position: | 242-454 |
| Cow position: | chr27:20324900-20325120 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 243-416 |
| Cow position: | chr27:15003217-15003044 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 243-418 |
| Cow position: | chr27:21669350-21669181 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 243-421 |
| Cow position: | chr27:22171064-22171236 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 243-425 |
| Cow position: | chr27:26617177-26617352 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 177, 27 |
| Conread position: | 244-421 |
| Cow position: | chr27:6319685-6319858 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 245-430 |
| Cow position: | chr27:10581298-10581476 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 246-415 |
| Cow position: | chr27:27450118-27449952 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 246-416 |
| Cow position: | chr27:15859532-15859363 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 246-421 |
| Cow position: | chr27:23452228-23452400 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 246-421 |
| Cow position: | chr27:24693183-24693352 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 247-409 |
| Cow position: | chr27:31183338-31183503 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 249-418 |
| Cow position: | chr27:23890701-23890874 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 83, 41 |
| Conread position: | 251-413 |
| Cow position: | chr27:23177542-23177381 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 32 |
| Conread position: | 252-411 |
| Cow position: | chr27:29183455-29183287 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 252-415 |
| Cow position: | chr27:26504075-26504235 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 38 |
| Conread position: | 252-419 |
| Cow position: | chr27:23108131-23107963 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 82, 38 |
| Conread position: | 252-421 |
| Cow position: | chr27:19508783-19508952 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 253-441 |
| Cow position: | chr27:31031239-31031414 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 182, 14 |
| Conread position: | 255-421 |
| Cow position: | chr27:26238798-26238964 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 268-408 |
| Cow position: | chr27:26087104-26087242 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 270-453 |
| Cow position: | chr27:1768833-1768648 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 147, 20 |
| Conread position: | 293-418 |
| Cow position: | chr27:26959804-26959678 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 308-429 |
| Cow position: | chr27:788970-788850 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
Show alignments to all cow chromosomes.