Cow genome map
| Conread name: | Pig1-39B02 |
| Conread position: | 198-472 |
| Cow position: | chr29:14747013-14746744 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 146, 10 |
| Conread position: | 200-404 |
| Cow position: | chr29:33143125-33143322 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 203-402 |
| Cow position: | chr29:22776312-22776113 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 85 |
| Conread position: | 209-421 |
| Cow position: | chr29:26540319-26540525 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 133, 19 |
| Conread position: | 215-421 |
| Cow position: | chr29:43099528-43099730 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 118, 70 |
| Conread position: | 217-416 |
| Cow position: | chr29:22613640-22613450 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 220-364 |
| Cow position: | chr29:570628-570767 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 220-416 |
| Cow position: | chr29:21666302-21666107 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 109, 66 |
| Conread position: | 220-429 |
| Cow position: | chr29:22734892-22735098 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 222-417 |
| Cow position: | chr29:732824-732640 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 225-434 |
| Cow position: | chr29:22576964-22577175 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 63 |
| Conread position: | 226-415 |
| Cow position: | chr29:17282270-17282089 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 227-393 |
| Cow position: | chr29:36546571-36546739 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 12, 65 |
| Conread position: | 227-416 |
| Cow position: | chr29:1615137-1614949 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 10, 64 |
| Conread position: | 228-416 |
| Cow position: | chr29:936413-936227 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 64 |
| Conread position: | 228-418 |
| Cow position: | chr29:17804740-17804553 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 228-421 |
| Cow position: | chr29:32215912-32215724 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 228-442 |
| Cow position: | chr29:29308373-29308576 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 11, 59 |
| Conread position: | 229-413 |
| Cow position: | chr29:24660884-24660710 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 229-418 |
| Cow position: | chr29:28066691-28066505 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 230-422 |
| Cow position: | chr29:29923371-29923557 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 103, 13 |
| Conread position: | 231-399 |
| Cow position: | chr29:26779081-26778919 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 232-408 |
| Cow position: | chr29:25092308-25092134 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 232-411 |
| Cow position: | chr29:44991221-44991399 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 34, 59 |
| Conread position: | 232-416 |
| Cow position: | chr29:7624369-7624199 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 232-418 |
| Cow position: | chr29:25288715-25288905 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 75, 58 |
| Conread position: | 232-421 |
| Cow position: | chr29:25737216-25737399 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 100, 17 |
| Conread position: | 232-427 |
| Cow position: | chr29:4070824-4070631 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 177, 58 |
| Conread position: | 232-430 |
| Cow position: | chr29:36531070-36530873 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 102, 58 |
| Conread position: | 233-364 |
| Cow position: | chr29:659484-659354 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 99, 52 |
| Conread position: | 233-418 |
| Cow position: | chr29:43088509-43088329 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 91, 57 |
| Conread position: | 233-421 |
| Cow position: | chr29:19762466-19762286 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 233-421 |
| Cow position: | chr29:23874665-23874475 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 233-432 |
| Cow position: | chr29:9310806-9310604 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 82, 51 |
| Conread position: | 233-432 |
| Cow position: | chr29:24952890-24952692 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 50 |
| Conread position: | 233-435 |
| Cow position: | chr29:14577060-14576860 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 234-429 |
| Cow position: | chr29:22729767-22729575 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 234-431 |
| Cow position: | chr29:7443865-7444056 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 235-418 |
| Cow position: | chr29:19363909-19363729 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 150 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 235-425 |
| Cow position: | chr29:4479966-4480162 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 235-442 |
| Cow position: | chr29:39038068-39038274 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 97, 53 |
| Conread position: | 237-421 |
| Cow position: | chr29:30548973-30548791 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 237-432 |
| Cow position: | chr29:31929185-31928993 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 87, 51 |
| Conread position: | 241-408 |
| Cow position: | chr29:1325641-1325467 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 242-376 |
| Cow position: | chr29:10839133-10839001 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 242-393 |
| Cow position: | chr29:40112573-40112425 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 242-416 |
| Cow position: | chr29:40763502-40763674 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 129, 48 |
| Conread position: | 242-418 |
| Cow position: | chr29:5063337-5063163 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 242-418 |
| Cow position: | chr29:26275795-26275628 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 242-421 |
| Cow position: | chr29:9378829-9378652 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 242-421 |
| Cow position: | chr29:9709887-9709710 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 242-421 |
| Cow position: | chr29:17110147-17109975 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 242-421 |
| Cow position: | chr29:17222610-17222428 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 75, 39 |
| Conread position: | 242-424 |
| Cow position: | chr29:4441011-4441193 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 48 |
| Conread position: | 242-429 |
| Cow position: | chr29:19949499-19949317 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 242-430 |
| Cow position: | chr29:396596-396411 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 179, 37 |
| Conread position: | 242-442 |
| Cow position: | chr29:36781116-36781309 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 242-445 |
| Cow position: | chr29:12890870-12890668 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 147, 23 |
| Conread position: | 242-450 |
| Cow position: | chr29:15798145-15797940 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 242-457 |
| Cow position: | chr29:39639034-39638825 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 243-421 |
| Cow position: | chr29:12680351-12680171 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 94, 47 |
| Conread position: | 243-432 |
| Cow position: | chr29:36357321-36357133 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 75, 47 |
| Conread position: | 245-445 |
| Cow position: | chr29:18579646-18579851 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 251-371 |
| Cow position: | chr29:27846669-27846546 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 67, 39 |
| Conread position: | 251-416 |
| Cow position: | chr29:32197879-32197717 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 251-421 |
| Cow position: | chr29:29769169-29769336 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 136, 42 |
| Conread position: | 251-421 |
| Cow position: | chr29:40350896-40351060 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 81, 39 |
| Conread position: | 251-429 |
| Cow position: | chr29:7290954-7290783 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 251-442 |
| Cow position: | chr29:29324235-29324425 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 252-421 |
| Cow position: | chr29:4874706-4874864 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 252-425 |
| Cow position: | chr29:41112706-41112871 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 168, 33 |
| Conread position: | 255-418 |
| Cow position: | chr29:34358797-34358960 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 255-421 |
| Cow position: | chr29:22723777-22723616 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 255-421 |
| Cow position: | chr29:23825031-23825195 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 307-421 |
| Cow position: | chr29:17022279-17022165 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.