Cow genome map
| Conread name: | Pig1-39F13 |
| Conread position: | 4-449 |
| Cow position: | chr25:33299249-33299693 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 5-449 |
| Cow position: | chr25:33144948-33145388 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 5-450 |
| Cow position: | chr25:36800814-36801258 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 283 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 5-454 |
| Cow position: | chr25:25652203-25652651 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 17 |
| Conread position: | 5-454 |
| Cow position: | chr25:34769857-34769409 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 7-454 |
| Cow position: | chr25:23420316-23420762 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 13-449 |
| Cow position: | chr25:33298922-33299357 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 13-451 |
| Cow position: | chr25:33157282-33156845 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 13-454 |
| Cow position: | chr25:25652379-25652819 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 14-322 |
| Cow position: | chr25:33127910-33128217 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 14-418 |
| Cow position: | chr25:33157197-33156794 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 14-448 |
| Cow position: | chr25:34447298-34447729 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 14-449 |
| Cow position: | chr25:33298755-33299189 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 14-449 |
| Cow position: | chr25:36800991-36801413 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 14-450 |
| Cow position: | chr25:18642147-18641700 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 14-450 |
| Cow position: | chr25:25652296-25652731 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 8 |
| Conread position: | 14-450 |
| Cow position: | chr25:25652632-25653067 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 8 |
| Conread position: | 14-451 |
| Cow position: | chr25:34433548-34433978 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 14-451 |
| Cow position: | chr25:34770016-34769580 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 21-451 |
| Cow position: | chr25:34713980-34714410 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 25, 21 |
| Conread position: | 22-454 |
| Cow position: | chr25:33299098-33299530 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 32, 109 |
| Conread position: | 25-235 |
| Cow position: | chr25:33299605-33299815 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 101 |
| Conread position: | 25-449 |
| Cow position: | chr25:33306345-33305926 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 26-298 |
| Cow position: | chr25:33157018-33156748 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 102 |
| Conread position: | 26-364 |
| Cow position: | chr25:33306427-33306098 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 26-449 |
| Cow position: | chr25:36800582-36801005 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 275 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 26-450 |
| Cow position: | chr25:33127753-33128177 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 105 |
| Conread position: | 27-454 |
| Cow position: | chr25:23420419-23420846 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 32-443 |
| Cow position: | chr25:36800924-36801335 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 32-449 |
| Cow position: | chr25:33298688-33299105 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 13 |
| Conread position: | 34-442 |
| Cow position: | chr25:33305437-33305039 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 400, 17 |
| Conread position: | 35-440 |
| Cow position: | chr25:326457-326862 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 35-449 |
| Cow position: | chr25:33305920-33305512 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 19, 90 |
| Conread position: | 35-451 |
| Cow position: | chr25:34446982-34447398 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 36-364 |
| Cow position: | chr25:33305190-33304867 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 73 |
| Conread position: | 36-449 |
| Cow position: | chr25:326374-326787 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 18, 87 |
| Conread position: | 36-449 |
| Cow position: | chr25:33298608-33299021 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 38-451 |
| Cow position: | chr25:34769657-34769244 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 95 |
| Conread position: | 39-279 |
| Cow position: | chr25:34432984-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 100 |
| Conread position: | 39-368 |
| Cow position: | chr25:18642207-18641875 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 13, 84 |
| Conread position: | 39-449 |
| Cow position: | chr25:36801339-36801749 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 92 |
| Conread position: | 39-451 |
| Cow position: | chr25:34447154-34447566 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 264 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 39-454 |
| Cow position: | chr25:33157425-33157010 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 43-291 |
| Cow position: | chr25:366777-367024 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 108 |
| Conread position: | 43-450 |
| Cow position: | chr25:33144901-33145305 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 11, 50 |
| Conread position: | 43-450 |
| Cow position: | chr25:34770156-34769749 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 52-451 |
| Cow position: | chr25:346426-346824 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 137, 78 |
| Conread position: | 53-336 |
| Cow position: | chr25:326986-327268 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 124, 75 |
| Conread position: | 53-403 |
| Cow position: | chr25:36801606-36801955 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 53-417 |
| Cow position: | chr25:22235976-22236339 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 155, 74 |
| Conread position: | 53-449 |
| Cow position: | chr25:36801438-36801833 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 53-450 |
| Cow position: | chr25:34447253-34447649 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 53-456 |
| Cow position: | chr25:33299046-33299448 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 258 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 307, 77 |
| Conread position: | 56-449 |
| Cow position: | chr25:33298389-33298769 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 191, 73 |
| Conread position: | 56-456 |
| Cow position: | chr25:36800445-36800844 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 58-454 |
| Cow position: | chr25:33144833-33145225 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 185, 72 |
| Conread position: | 64-449 |
| Cow position: | chr25:36801533-36801917 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 62 |
| Conread position: | 64-454 |
| Cow position: | chr25:34713772-34714161 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 65-368 |
| Cow position: | chr25:34769545-34769243 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 73-404 |
| Cow position: | chr25:366724-367054 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 116, 59 |
| Conread position: | 74-443 |
| Cow position: | chr25:36800799-36801167 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 233, 56 |
| Conread position: | 74-448 |
| Cow position: | chr25:33298479-33298852 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 223, 56 |
| Conread position: | 75-449 |
| Cow position: | chr25:33306046-33305680 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 83-456 |
| Cow position: | chr25:36800556-36800928 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 88-450 |
| Cow position: | chr25:33127732-33128093 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 89-450 |
| Cow position: | chr25:22235844-22236204 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 93-449 |
| Cow position: | chr25:34446873-34447228 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 93-454 |
| Cow position: | chr25:34446957-34447317 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 120, 33 |
| Conread position: | 98-449 |
| Cow position: | chr25:326353-326703 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 146, 32 |
| Conread position: | 137-448 |
| Cow position: | chr25:33305422-33305115 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 138-454 |
| Cow position: | chr25:18642192-18641873 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 88 |
| Conread position: | 138-456 |
| Cow position: | chr25:34770145-34769827 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-442 |
| Cow position: | chr25:34732614-34732325 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 158-456 |
| Cow position: | chr25:346447-346745 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 159-450 |
| Cow position: | chr25:22235829-22236120 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 180-454 |
| Cow position: | chr25:33127739-33128013 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 202-454 |
| Cow position: | chr25:34770166-34769913 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 7, 90 |
| Conread position: | 243-456 |
| Cow position: | chr25:366725-366938 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.