Cow genome map
| Conread name: | Pig1-40G11 |
| Conread position: | 134-307 |
| Cow position: | chr1:43588933-43588765 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 76 |
| Conread position: | 134-471 |
| Cow position: | chr1:579007-578670 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 141, 47 |
| Conread position: | 138-373 |
| Cow position: | chr1:62049831-62049598 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 138-468 |
| Cow position: | chr1:24931798-24931478 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 138-471 |
| Cow position: | chr1:45880110-45879756 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 43, 312 |
| Conread position: | 139-331 |
| Cow position: | chr1:46883592-46883789 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 114 |
| Conread position: | 139-456 |
| Cow position: | chr1:91972713-91972397 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 74 |
| Conread position: | 144-363 |
| Cow position: | chr1:71965034-71964824 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 153-369 |
| Cow position: | chr1:91777740-91777955 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 207, 28 |
| Conread position: | 161-378 |
| Cow position: | chr1:73688681-73688460 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 174-463 |
| Cow position: | chr1:55115417-55115124 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 108, 84 |
| Conread position: | 178-443 |
| Cow position: | chr1:43745338-43745075 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 121, 11 |
| Conread position: | 179-378 |
| Cow position: | chr1:83120479-83120680 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 179-463 |
| Cow position: | chr1:33647564-33647283 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 126, 222 |
| Conread position: | 215-362 |
| Cow position: | chr1:44097283-44097430 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 122, 8 |
| Conread position: | 215-468 |
| Cow position: | chr1:43584145-43584405 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 216-335 |
| Cow position: | chr1:91025927-91026045 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 216-344 |
| Cow position: | chr1:81112763-81112636 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 216-344 |
| Cow position: | chr1:95062850-95062978 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 216-465 |
| Cow position: | chr1:17133736-17133991 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 216-468 |
| Cow position: | chr1:51822556-51822305 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 23 |
| Conread position: | 217-468 |
| Cow position: | chr1:1064509-1064771 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 123, 26 |
| Conread position: | 218-377 |
| Cow position: | chr1:89096690-89096529 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 218-469 |
| Cow position: | chr1:27875787-27876048 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 218-472 |
| Cow position: | chr1:19555161-19554898 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 119, 216 |
| Conread position: | 218-475 |
| Cow position: | chr1:92045424-92045685 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 115, 88 |
| Conread position: | 226-468 |
| Cow position: | chr1:43223652-43223401 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 135 |
| Conread position: | 247-474 |
| Cow position: | chr1:89778114-89778340 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 58, 45 |
| Conread position: | 267-468 |
| Cow position: | chr1:31519083-31518871 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 273-388 |
| Cow position: | chr1:91852472-91852357 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 273-461 |
| Cow position: | chr1:102649806-102649999 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 273-462 |
| Cow position: | chr1:60503043-60502846 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 77 |
| Conread position: | 273-468 |
| Cow position: | chr1:27972718-27972920 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 273-468 |
| Cow position: | chr1:73085880-73085672 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 273-468 |
| Cow position: | chr1:91669029-91669238 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 273-468 |
| Cow position: | chr1:94315381-94315181 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 273-473 |
| Cow position: | chr1:82405785-82405991 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 273-473 |
| Cow position: | chr1:84314297-84314092 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 62, 122 |
| Conread position: | 273-475 |
| Cow position: | chr1:11059577-11059364 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 273-475 |
| Cow position: | chr1:36891360-36891140 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 273-475 |
| Cow position: | chr1:40204083-40204294 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 147 |
| Conread position: | 273-475 |
| Cow position: | chr1:84793503-84793289 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 274-471 |
| Cow position: | chr1:28783662-28783472 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 137, 55 |
| Conread position: | 275-471 |
| Cow position: | chr1:38335487-38335686 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 101, 82 |
| Conread position: | 275-475 |
| Cow position: | chr1:21321982-21322192 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 150 |
| Conread position: | 285-475 |
| Cow position: | chr1:93736580-93736775 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 286-468 |
| Cow position: | chr1:78054977-78055170 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 138 |
| Conread position: | 307-475 |
| Cow position: | chr1:3412773-3412949 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 309-471 |
| Cow position: | chr1:101713516-101713687 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 35, 57 |
| Conread position: | 341-469 |
| Cow position: | chr1:44097428-44097565 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.