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Cow genome map

           
Conread name:
           
Pig1-44A05
        

               
Conread position:
               
2-220
               

               
Cow position:
               
chr28:3479962-3480191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr28:23839909-23840184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
180, 31
               

               
Conread position:
               
2-438
               

               
Cow position:
               
chr28:7684980-7684563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
3-145
               

               
Cow position:
               
chr28:3427163-3427023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chr28:9647328-9647163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr28:14742498-14742691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
78, 98
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr28:8372169-8372381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
78, 41
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr28:13356884-13356670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
179, 33
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr28:16441088-16441302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr28:6047744-6047986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 143
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr28:10888361-10888627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr28:2124137-2124414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
190, 88
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr28:5553228-5552955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 62
               

               
Conread position:
               
3-289
               

               
Cow position:
               
chr28:3751017-3751303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
141, 185
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr28:19222896-19222599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 50
               

               
Conread position:
               
3-301
               

               
Cow position:
               
chr28:4880566-4880260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
75, 190
               

               
Conread position:
               
3-302
               

               
Cow position:
               
chr28:5805217-5805515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
38, 142
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr28:15375124-15374812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr28:26269029-26269358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr28:18717427-18717078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
3-357
               

               
Cow position:
               
chr28:3256499-3256858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
141, 70
               

               
Conread position:
               
3-385
               

               
Cow position:
               
chr28:13267479-13267877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
3-402
               

               
Cow position:
               
chr28:11787008-11786612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 50
               

               
Conread position:
               
3-406
               

               
Cow position:
               
chr28:21380579-21380988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 69
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr28:21598555-21598133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 118
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr28:7865029-7865447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 35
               

               
Conread position:
               
3-419
               

               
Cow position:
               
chr28:7549364-7548936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 193
               

               
Conread position:
               
3-422
               

               
Cow position:
               
chr28:14933660-14934083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 282
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr28:11752447-11752008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 191
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr28:21354922-21355364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 192
               

               
Conread position:
               
3-431
               

               
Cow position:
               
chr28:25762730-25763155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
3-447
               

               
Cow position:
               
chr28:16401595-16402041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chr28:31648775-31649238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
3-467
               

               
Cow position:
               
chr28:11687327-11686851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 45
               

               
Conread position:
               
3-488
               

               
Cow position:
               
chr28:16346818-16346350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
141, 50
               

               
Conread position:
               
3-490
               

               
Cow position:
               
chr28:3914408-3914895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 414
               

               
Conread position:
               
3-499
               

               
Cow position:
               
chr28:19222447-19221938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 219
               

               
Conread position:
               
3-500
               

               
Cow position:
               
chr28:6059769-6059271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 24
               

               
Conread position:
               
3-500
               

               
Cow position:
               
chr28:13474005-13474499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
3-500
               

               
Cow position:
               
chr28:22308359-22308844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 39
               

               
Conread position:
               
3-504
               

               
Cow position:
               
chr28:2800944-2801431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
202, 33
               

               
Conread position:
               
3-504
               

               
Cow position:
               
chr28:4070662-4071162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 202
               

               
Conread position:
               
3-504
               

               
Cow position:
               
chr28:8787248-8787743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 87
               

               
Conread position:
               
3-504
               

               
Cow position:
               
chr28:11585510-11585005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 431
               

               
Conread position:
               
3-504
               

               
Cow position:
               
chr28:21868149-21868661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 195
               

               
Conread position:
               
3-504
               

               
Cow position:
               
chr28:25701162-25700666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
3-506
               

               
Cow position:
               
chr28:12430307-12430811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 58
               

               
Conread position:
               
3-508
               

               
Cow position:
               
chr28:3024211-3023708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 34
               

               
Conread position:
               
3-509
               

               
Cow position:
               
chr28:16211399-16210891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 216
               

               
Conread position:
               
3-511
               

               
Cow position:
               
chr28:23530562-23531074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 110
               

               
Conread position:
               
3-512
               

               
Cow position:
               
chr28:10616252-10615739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 43
               

               
Conread position:
               
3-512
               

               
Cow position:
               
chr28:15272561-15272058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
3-512
               

               
Cow position:
               
chr28:18790710-18791246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
3-513
               

               
Cow position:
               
chr28:4308200-4307680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 11
               

               
Conread position:
               
3-513
               

               
Cow position:
               
chr28:25727079-25727582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 75
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr28:5684402-5684915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 197
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr28:11527556-11527044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr28:16085023-16085534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 56
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr28:21844654-21845166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 194
               

               
Conread position:
               
3-520
               

               
Cow position:
               
chr28:12964275-12964805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 115
               

               
Conread position:
               
3-522
               

               
Cow position:
               
chr28:20124487-20125002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
3-525
               

               
Cow position:
               
chr28:9426644-9426126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 127
               

               
Conread position:
               
3-525
               

               
Cow position:
               
chr28:10606914-10606414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 55
               

               
Conread position:
               
3-535
               

               
Cow position:
               
chr28:8347420-8347966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 155
               

               
Conread position:
               
3-536
               

               
Cow position:
               
chr28:21104146-21103587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 17
               

               
Conread position:
               
3-536
               

               
Cow position:
               
chr28:22332248-22332770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 51
               

               
Conread position:
               
3-537
               

               
Cow position:
               
chr28:20312972-20313517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr28:7372552-7372351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
78, 101
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr28:15007861-15008144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
4-389
               

               
Cow position:
               
chr28:5792404-5792800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
4-479
               

               
Cow position:
               
chr28:4138979-4138488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
4-496
               

               
Cow position:
               
chr28:24343071-24343549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
141, 46
               

               
Conread position:
               
4-502
               

               
Cow position:
               
chr28:25056670-25057158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 181
               

               
Conread position:
               
4-507
               

               
Cow position:
               
chr28:17638165-17637650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
78, 29
               

               
Conread position:
               
4-513
               

               
Cow position:
               
chr28:3144188-3143671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
4-525
               

               
Cow position:
               
chr28:16919462-16918950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 32
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr28:20760224-20759989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
71, 189
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chr28:11451775-11451494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 148
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr28:7751601-7751239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 204
               

               
Conread position:
               
5-438
               

               
Cow position:
               
chr28:6971639-6971203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 138
               

               
Conread position:
               
5-438
               

               
Cow position:
               
chr28:16109653-16110078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
5-501
               

               
Cow position:
               
chr28:15600964-15601475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 83
               

               
Conread position:
               
5-507
               

               
Cow position:
               
chr28:4282792-4282282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 213
               

               
Conread position:
               
5-525
               

               
Cow position:
               
chr28:30293887-30293361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 31
               

               
Conread position:
               
5-530
               

               
Cow position:
               
chr28:34878270-34877744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
6-503
               

               
Cow position:
               
chr28:23008027-23007539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 139
               

               
Conread position:
               
8-425
               

               
Cow position:
               
chr28:14234680-14235080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
136, 28
               

               
Conread position:
               
11-487
               

               
Cow position:
               
chr28:12619271-12619770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
11-544
               

               
Cow position:
               
chr28:24966094-24966629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 158
               

               
Conread position:
               
12-403
               

               
Cow position:
               
chr28:7228677-7228283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
13-512
               

               
Cow position:
               
chr28:5817555-5818050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 87
               

               
Conread position:
               
15-531
               

               
Cow position:
               
chr28:27218031-27218555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
16-515
               

               
Cow position:
               
chr28:1099928-1099461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
17-418
               

               
Cow position:
               
chr28:18590982-18591390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
17-425
               

               
Cow position:
               
chr28:18354604-18354201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
17-504
               

               
Cow position:
               
chr28:16215179-16214681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
192, 63
               

               
Conread position:
               
17-512
               

               
Cow position:
               
chr28:22132638-22133120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 129
               

               
Conread position:
               
17-518
               

               
Cow position:
               
chr28:28766198-28765687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 473
               

               
Conread position:
               
18-175
               

               
Cow position:
               
chr28:5837825-5837982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 126
               

               
Conread position:
               
18-268
               

               
Cow position:
               
chr28:22171006-22170743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
18-308
               

               
Cow position:
               
chr28:9390652-9390352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
66, 178
               

               
Conread position:
               
18-315
               

               
Cow position:
               
chr28:4022095-4022406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
63, 128
               

               
Conread position:
               
18-490
               

               
Cow position:
               
chr28:21363471-21363930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 94
               

               
Conread position:
               
20-475
               

               
Cow position:
               
chr28:30303478-30303033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 61
               

               
Conread position:
               
20-490
               

               
Cow position:
               
chr28:26743337-26743821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 127
               

               
Conread position:
               
21-533
               

               
Cow position:
               
chr28:2819474-2819998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 212
               

               
Conread position:
               
22-504
               

               
Cow position:
               
chr28:11426827-11426344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 8
               

               
Conread position:
               
23-301
               

               
Cow position:
               
chr28:26784750-26784459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
23-527
               

               
Cow position:
               
chr28:7698263-7697749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 46
               

               
Conread position:
               
25-285
               

               
Cow position:
               
chr28:17316580-17316857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
114, 31
               

               
Conread position:
               
25-507
               

               
Cow position:
               
chr28:14657415-14657923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 208
               

               
Conread position:
               
26-505
               

               
Cow position:
               
chr28:661842-662305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 65
               

               
Conread position:
               
27-510
               

               
Cow position:
               
chr28:616124-616579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
28-504
               

               
Cow position:
               
chr28:33884132-33884607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 120
               

               
Conread position:
               
30-525
               

               
Cow position:
               
chr28:15263999-15263494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
34-407
               

               
Cow position:
               
chr28:5128998-5128618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 64
               

               
Conread position:
               
34-430
               

               
Cow position:
               
chr28:23410596-23410192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 157
               

               
Conread position:
               
35-269
               

               
Cow position:
               
chr28:24996860-24996615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 69
               

               
Conread position:
               
35-387
               

               
Cow position:
               
chr28:8408472-8408824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
35-455
               

               
Cow position:
               
chr28:25596361-25596778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 156
               

               
Conread position:
               
35-507
               

               
Cow position:
               
chr28:23459867-23460351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 239
               

               
Conread position:
               
38-522
               

               
Cow position:
               
chr28:16204601-16204107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
39-508
               

               
Cow position:
               
chr28:34229963-34230439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
42-285
               

               
Cow position:
               
chr28:16244022-16243767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
42-504
               

               
Cow position:
               
chr28:3493047-3492583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 248
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr28:12048961-12048774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 150
               

               
Conread position:
               
43-315
               

               
Cow position:
               
chr28:16253117-16252838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
120, 36
               

               
Conread position:
               
43-457
               

               
Cow position:
               
chr28:23793561-23793154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
43-469
               

               
Cow position:
               
chr28:3408479-3408053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
98, 160
               

               
Conread position:
               
44-426
               

               
Cow position:
               
chr28:29434688-29434299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
12, 164
               

               
Conread position:
               
44-504
               

               
Cow position:
               
chr28:26719099-26719534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
47-345
               

               
Cow position:
               
chr28:6861695-6862002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
47-500
               

               
Cow position:
               
chr28:25806331-25806797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
156, 34
               

               
Conread position:
               
52-502
               

               
Cow position:
               
chr28:3078931-3078494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
53-268
               

               
Cow position:
               
chr28:13242076-13241855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
28, 93
               

               
Conread position:
               
53-315
               

               
Cow position:
               
chr28:5773390-5773654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
91, 28
               

               
Conread position:
               
53-424
               

               
Cow position:
               
chr28:13607633-13608013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
53-430
               

               
Cow position:
               
chr28:33051768-33052169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 145
               

               
Conread position:
               
53-515
               

               
Cow position:
               
chr28:5236852-5236380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
53-525
               

               
Cow position:
               
chr28:9740219-9740683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
53-526
               

               
Cow position:
               
chr28:1837744-1838223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
98, 25
               

               
Conread position:
               
54-504
               

               
Cow position:
               
chr28:16370325-16369885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 91
               

               
Conread position:
               
54-523
               

               
Cow position:
               
chr28:21502144-21502606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 148
               

               
Conread position:
               
54-543
               

               
Cow position:
               
chr28:22345768-22346268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
55-430
               

               
Cow position:
               
chr28:25249105-25249487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
55-433
               

               
Cow position:
               
chr28:22321172-22321554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 239
               

               
Conread position:
               
55-469
               

               
Cow position:
               
chr28:26103465-26103867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
56-316
               

               
Cow position:
               
chr28:24646291-24646558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 138
               

               
Conread position:
               
56-481
               

               
Cow position:
               
chr28:2898746-2899179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 217
               

               
Conread position:
               
57-413
               

               
Cow position:
               
chr28:13176926-13176573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
20, 5
               

               
Conread position:
               
61-443
               

               
Cow position:
               
chr28:14649103-14649487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
15, 130
               

               
Conread position:
               
62-532
               

               
Cow position:
               
chr28:31841583-31841116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
13, 150
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chr28:4841639-4841280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
18, 136
               

               
Conread position:
               
64-524
               

               
Cow position:
               
chr28:11423045-11422594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
67-521
               

               
Cow position:
               
chr28:9636695-9636235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
70-524
               

               
Cow position:
               
chr28:33036701-33036261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
6, 69
               

               
Conread position:
               
71-504
               

               
Cow position:
               
chr28:11884757-11884327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 64
               

               
Conread position:
               
73-389
               

               
Cow position:
               
chr28:25282974-25283286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 10
               

               
Conread position:
               
75-320
               

               
Cow position:
               
chr28:19394401-19394642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
130, 72
               

               
Conread position:
               
75-501
               

               
Cow position:
               
chr28:12951203-12951617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
75-512
               

               
Cow position:
               
chr28:9099705-9100139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
75-513
               

               
Cow position:
               
chr28:5144752-5144301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 208
               

               
Conread position:
               
75-534
               

               
Cow position:
               
chr28:750997-751463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
77-525
               

               
Cow position:
               
chr28:10053566-10053109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 365
               

               
Conread position:
               
78-290
               

               
Cow position:
               
chr28:13447482-13447691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 67
               

               
Conread position:
               
85-504
               

               
Cow position:
               
chr28:5074724-5074317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
19, 15
               

               
Conread position:
               
94-504
               

               
Cow position:
               
chr28:29416927-29416521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 103
               

               
Conread position:
               
95-523
               

               
Cow position:
               
chr28:4884476-4884031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 102
               

               
Conread position:
               
103-512
               

               
Cow position:
               
chr28:4090246-4089849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
110-512
               

               
Cow position:
               
chr28:10844924-10845314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
36, 122
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr28:4881440-4881036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
117-504
               

               
Cow position:
               
chr28:23724643-23724265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 86
               

               
Conread position:
               
118-437
               

               
Cow position:
               
chr28:10999855-10999541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
119-447
               

               
Cow position:
               
chr28:18760228-18759906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
119-514
               

               
Cow position:
               
chr28:11866855-11866454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
124-333
               

               
Cow position:
               
chr28:28903847-28903627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
127-498
               

               
Cow position:
               
chr28:5273611-5273229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
128-500
               

               
Cow position:
               
chr28:20409216-20409591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
134-504
               

               
Cow position:
               
chr28:4016373-4016727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 5
               

               
Conread position:
               
135-536
               

               
Cow position:
               
chr28:24693110-24693512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
137-395
               

               
Cow position:
               
chr28:18186392-18186654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
40, 8
               

               
Conread position:
               
138-523
               

               
Cow position:
               
chr28:29499158-29498782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
145-522
               

               
Cow position:
               
chr28:5199668-5200049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
59, 17
               

               
Conread position:
               
145-525
               

               
Cow position:
               
chr28:1632811-1632422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
149-315
               

               
Cow position:
               
chr28:118204-118032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
149-390
               

               
Cow position:
               
chr28:4098690-4098923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
149-402
               

               
Cow position:
               
chr28:32365693-32365949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 6
               

               
Conread position:
               
149-403
               

               
Cow position:
               
chr28:2872765-2873025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
149-438
               

               
Cow position:
               
chr28:2752649-2752353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
149-500
               

               
Cow position:
               
chr28:24082118-24082470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
149-504
               

               
Cow position:
               
chr28:8291283-8291617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
123, 47
               

               
Conread position:
               
149-504
               

               
Cow position:
               
chr28:13527051-13527402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 74
               

               
Conread position:
               
149-504
               

               
Cow position:
               
chr28:29989265-29988904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
149-512
               

               
Cow position:
               
chr28:11829090-11828748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
149-514
               

               
Cow position:
               
chr28:5437240-5436873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
149-517
               

               
Cow position:
               
chr28:4643915-4643552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
149-525
               

               
Cow position:
               
chr28:4158806-4159186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
149-541
               

               
Cow position:
               
chr28:26982895-26982491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 134
               

               
Conread position:
               
149-544
               

               
Cow position:
               
chr28:3406582-3406167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
55, 131
               

               
Conread position:
               
150-504
               

               
Cow position:
               
chr28:30746879-30746534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
152-529
               

               
Cow position:
               
chr28:10495426-10495071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
156-435
               

               
Cow position:
               
chr28:4355403-4355684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 117
               

               
Conread position:
               
156-524
               

               
Cow position:
               
chr28:10863927-10863571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
157-504
               

               
Cow position:
               
chr28:27161474-27161112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
40, 216
               

               
Conread position:
               
160-530
               

               
Cow position:
               
chr28:9812142-9812513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
118, 62
               

               
Conread position:
               
162-513
               

               
Cow position:
               
chr28:22571804-22571471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
163-508
               

               
Cow position:
               
chr28:19262727-19262376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 98
               

               
Conread position:
               
164-504
               

               
Cow position:
               
chr28:7009112-7008777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
35, 112
               

               
Conread position:
               
164-523
               

               
Cow position:
               
chr28:11307637-11307293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
7, 33
               

               
Conread position:
               
167-513
               

               
Cow position:
               
chr28:3449165-3449522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
172-504
               

               
Cow position:
               
chr28:11346614-11346285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
178-533
               

               
Cow position:
               
chr28:6358535-6358178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 118
               

               
Conread position:
               
179-504
               

               
Cow position:
               
chr28:23296210-23296523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
186-492
               

               
Cow position:
               
chr28:18370124-18369821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 124
               

               
Conread position:
               
187-525
               

               
Cow position:
               
chr28:3484462-3484810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
18, 119
               

               
Conread position:
               
188-508
               

               
Cow position:
               
chr28:12933845-12933528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
189-528
               

               
Cow position:
               
chr28:11079193-11079531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 134
               

               
Conread position:
               
190-420
               

               
Cow position:
               
chr28:5166654-5166890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
190-504
               

               
Cow position:
               
chr28:3011385-3011063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 166
               

               
Conread position:
               
190-504
               

               
Cow position:
               
chr28:7372233-7371906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 8
               

               
Conread position:
               
190-535
               

               
Cow position:
               
chr28:30234280-30234621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
191-503
               

               
Cow position:
               
chr28:12672572-12672258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
192-500
               

               
Cow position:
               
chr28:19564338-19564035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
13, 218
               

               
Conread position:
               
197-525
               

               
Cow position:
               
chr28:31223671-31223331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
7, 69
               

               
Conread position:
               
199-535
               

               
Cow position:
               
chr28:13245462-13245799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 330
               

               
Conread position:
               
213-466
               

               
Cow position:
               
chr28:24706822-24707074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
210, 8
               

               
Conread position:
               
215-430
               

               
Cow position:
               
chr28:17601634-17601421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
215-503
               

               
Cow position:
               
chr28:7927095-7927364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
215-504
               

               
Cow position:
               
chr28:5139076-5138795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
215-504
               

               
Cow position:
               
chr28:7350578-7350854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
215-508
               

               
Cow position:
               
chr28:7388847-7388562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
269, 52
               

               
Conread position:
               
215-530
               

               
Cow position:
               
chr28:5262441-5262753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
217-516
               

               
Cow position:
               
chr28:10907000-10907304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
218-438
               

               
Cow position:
               
chr28:3161031-3160816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
218-438
               

               
Cow position:
               
chr28:8147939-8147723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
218-445
               

               
Cow position:
               
chr28:32174552-32174775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
102, 53
               

               
Conread position:
               
220-520
               

               
Cow position:
               
chr28:777598-777897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
223-474
               

               
Cow position:
               
chr28:11559708-11559459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
54, 211
               

               
Conread position:
               
225-521
               

               
Cow position:
               
chr28:7619223-7618942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
45, 197
               

               
Conread position:
               
226-504
               

               
Cow position:
               
chr28:17012361-17012101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
203, 40
               

               
Conread position:
               
230-504
               

               
Cow position:
               
chr28:4013021-4013287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
230-504
               

               
Cow position:
               
chr28:19361674-19361943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
230-513
               

               
Cow position:
               
chr28:5630020-5630312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 154
               

               
Conread position:
               
233-505
               

               
Cow position:
               
chr28:4006733-4006986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
237-425
               

               
Cow position:
               
chr28:4765617-4765803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
237-490
               

               
Cow position:
               
chr28:20397429-20397176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
236, 30
               

               
Conread position:
               
237-504
               

               
Cow position:
               
chr28:20759760-20759489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
184, 43
               

               
Conread position:
               
238-512
               

               
Cow position:
               
chr28:13371197-13370928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
145, 42
               

               
Conread position:
               
241-520
               

               
Cow position:
               
chr28:4823552-4823821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
163, 26
               

               
Conread position:
               
244-525
               

               
Cow position:
               
chr28:11059451-11059715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
245-525
               

               
Cow position:
               
chr28:3726264-3725981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 177
               

               
Conread position:
               
246-504
               

               
Cow position:
               
chr28:11815128-11814875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
110, 24
               

               
Conread position:
               
246-504
               

               
Cow position:
               
chr28:34843624-34843368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
247-490
               

               
Cow position:
               
chr28:26531330-26531091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 52
               

               
Conread position:
               
247-511
               

               
Cow position:
               
chr28:3445531-3445268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
31, 47
               

               
Conread position:
               
250-525
               

               
Cow position:
               
chr28:5235836-5236104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
253-438
               

               
Cow position:
               
chr28:7498192-7498006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
253-493
               

               
Cow position:
               
chr28:4045805-4046037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
253-500
               

               
Cow position:
               
chr28:19216778-19217012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
254-514
               

               
Cow position:
               
chr28:6283528-6283276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
38, 7
               

               
Conread position:
               
259-504
               

               
Cow position:
               
chr28:17680584-17680829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
259-517
               

               
Cow position:
               
chr28:6975203-6975450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
17, 22
               

               
Conread position:
               
260-504
               

               
Cow position:
               
chr28:17739790-17740029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
261-522
               

               
Cow position:
               
chr28:8827128-8827386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
267-530
               

               
Cow position:
               
chr28:9705622-9705884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
271-529
               

               
Cow position:
               
chr28:17949139-17948885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
234, 150
               

               
Conread position:
               
272-445
               

               
Cow position:
               
chr28:8149661-8149484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
272-508
               

               
Cow position:
               
chr28:4185882-4186111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 24
               

               
Conread position:
               
272-512
               

               
Cow position:
               
chr28:33561338-33561578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 135
               

               
Conread position:
               
272-523
               

               
Cow position:
               
chr28:18770060-18770310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
139, 8
               

               
Conread position:
               
272-528
               

               
Cow position:
               
chr28:26944182-26943924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 8
               

               
Conread position:
               
273-504
               

               
Cow position:
               
chr28:7132111-7131887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
80, 63
               

               
Conread position:
               
274-500
               

               
Cow position:
               
chr28:8304224-8304442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 64
               

               
Conread position:
               
275-542
               

               
Cow position:
               
chr28:5254852-5255119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
228, 147
               

               
Conread position:
               
276-508
               

               
Cow position:
               
chr28:11016386-11016612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
71, 105
               

               
Conread position:
               
277-498
               

               
Cow position:
               
chr28:27721683-27721894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
280-500
               

               
Cow position:
               
chr28:7014436-7014654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
12, 16
               

               
Conread position:
               
280-504
               

               
Cow position:
               
chr28:4101503-4101716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 139
               

               
Conread position:
               
280-512
               

               
Cow position:
               
chr28:5231921-5232153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
201, 126
               

               
Conread position:
               
282-508
               

               
Cow position:
               
chr28:29850830-29850614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
194, 134
               

               
Conread position:
               
286-504
               

               
Cow position:
               
chr28:15362568-15362782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
117, 143
               

               
Conread position:
               
286-525
               

               
Cow position:
               
chr28:13048294-13048059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
286-525
               

               
Cow position:
               
chr28:20173825-20174060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
6, 10
               

               
Conread position:
               
288-500
               

               
Cow position:
               
chr28:5188439-5188229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
9, 141
               

               
Conread position:
               
288-511
               

               
Cow position:
               
chr28:6563906-6563683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
288-524
               

               
Cow position:
               
chr28:4937250-4937015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
289-489
               

               
Cow position:
               
chr28:5712010-5711822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
292-513
               

               
Cow position:
               
chr28:4163584-4163367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
293-493
               

               
Cow position:
               
chr28:12973877-12974077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr28:15295230-15295446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
59, 135
               

               
Conread position:
               
295-430
               

               
Cow position:
               
chr28:23047618-23047751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
295-488
               

               
Cow position:
               
chr28:16879571-16879756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
295-500
               

               
Cow position:
               
chr28:8259626-8259832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
295-504
               

               
Cow position:
               
chr28:5441899-5441693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 59
               

               
Conread position:
               
295-504
               

               
Cow position:
               
chr28:11411538-11411335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
28, 118
               

               
Conread position:
               
295-508
               

               
Cow position:
               
chr28:30902124-30902329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
295-509
               

               
Cow position:
               
chr28:6321815-6322027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
150, 90
               

               
Conread position:
               
295-516
               

               
Cow position:
               
chr28:5805669-5805878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
295-525
               

               
Cow position:
               
chr28:5673873-5674097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
111, 132
               

               
Conread position:
               
296-500
               

               
Cow position:
               
chr28:4877432-4877232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
296-504
               

               
Cow position:
               
chr28:32358107-32358308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
297-500
               

               
Cow position:
               
chr28:19039019-19038818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
297-504
               

               
Cow position:
               
chr28:7557734-7557523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
297-522
               

               
Cow position:
               
chr28:4876443-4876659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
299-525
               

               
Cow position:
               
chr28:11398795-11398569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
302-503
               

               
Cow position:
               
chr28:9109221-9109414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
303-514
               

               
Cow position:
               
chr28:3758998-3759210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
126, 12
               

               
Conread position:
               
304-457
               

               
Cow position:
               
chr28:8167343-8167196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
304-501
               

               
Cow position:
               
chr28:10890728-10890541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
304-542
               

               
Cow position:
               
chr28:8716380-8716140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
116, 11
               

               
Conread position:
               
305-438
               

               
Cow position:
               
chr28:2743089-2743223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
305-508
               

               
Cow position:
               
chr28:4073977-4074185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
305-510
               

               
Cow position:
               
chr28:10480803-10480591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
46, 64
               

               
Conread position:
               
305-512
               

               
Cow position:
               
chr28:25827723-25827516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
305-527
               

               
Cow position:
               
chr28:7644748-7644965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
56, 74
               

               
Conread position:
               
305-529
               

               
Cow position:
               
chr28:117755-117528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
305-536
               

               
Cow position:
               
chr28:4022681-4022907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
306-500
               

               
Cow position:
               
chr28:20968571-20968376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
307-533
               

               
Cow position:
               
chr28:3137553-3137788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
309-533
               

               
Cow position:
               
chr28:22307021-22307233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
311-511
               

               
Cow position:
               
chr28:11827702-11827900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
191, 25
               

               
Conread position:
               
312-504
               

               
Cow position:
               
chr28:10252902-10252711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
312-523
               

               
Cow position:
               
chr28:26530851-26530645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
312-525
               

               
Cow position:
               
chr28:20281773-20281973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
312-533
               

               
Cow position:
               
chr28:659280-659056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
119, 137
               

               
Conread position:
               
312-533
               

               
Cow position:
               
chr28:3423792-3424012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
190, 99
               

               
Conread position:
               
313-507
               

               
Cow position:
               
chr28:2825435-2825628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
313-512
               

               
Cow position:
               
chr28:5552699-5552492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
313-519
               

               
Cow position:
               
chr28:2777546-2777748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr28:2821270-2821464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
314-522
               

               
Cow position:
               
chr28:27445556-27445354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 113
               

               
Conread position:
               
314-525
               

               
Cow position:
               
chr28:32014801-32015011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
207, 122
               

               
Conread position:
               
315-507
               

               
Cow position:
               
chr28:10196847-10196663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
315-514
               

               
Cow position:
               
chr28:12991160-12991349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
318-490
               

               
Cow position:
               
chr28:26269408-26269589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
130, 9
               

               
Conread position:
               
318-508
               

               
Cow position:
               
chr28:22085521-22085337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
320-504
               

               
Cow position:
               
chr28:3678385-3678563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
320-513
               

               
Cow position:
               
chr28:2892275-2892469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
320-514
               

               
Cow position:
               
chr28:26868127-26867940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
320-519
               

               
Cow position:
               
chr28:10958825-10959018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
320-525
               

               
Cow position:
               
chr28:24887615-24887819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
320-536
               

               
Cow position:
               
chr28:26820256-26820040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
119, 50
               

               
Conread position:
               
321-445
               

               
Cow position:
               
chr28:24674492-24674617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
13, 90
               

               
Conread position:
               
321-456
               

               
Cow position:
               
chr28:2090555-2090689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
321-490
               

               
Cow position:
               
chr28:3729995-3729830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
323-504
               

               
Cow position:
               
chr28:2151414-2151236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
326-499
               

               
Cow position:
               
chr28:28501262-28501440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 11
               

               
Conread position:
               
327-490
               

               
Cow position:
               
chr28:18608338-18608175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
327-504
               

               
Cow position:
               
chr28:5609887-5609714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
327-512
               

               
Cow position:
               
chr28:34463944-34464129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
327-513
               

               
Cow position:
               
chr28:4870775-4870583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
327-520
               

               
Cow position:
               
chr28:11239290-11239092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 154
               

               
Conread position:
               
327-523
               

               
Cow position:
               
chr28:7964648-7964455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
327-525
               

               
Cow position:
               
chr28:2077530-2077726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
327-525
               

               
Cow position:
               
chr28:17620330-17620134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
327-525
               

               
Cow position:
               
chr28:21744745-21744935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
327-529
               

               
Cow position:
               
chr28:118639-118844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
327-529
               

               
Cow position:
               
chr28:8936180-8936375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
328-488
               

               
Cow position:
               
chr28:19118000-19118160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
80, 85
               

               
Conread position:
               
328-511
               

               
Cow position:
               
chr28:11562215-11562032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
329-525
               

               
Cow position:
               
chr28:19128137-19127945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
185, 32
               

               
Conread position:
               
331-500
               

               
Cow position:
               
chr28:4227510-4227676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
97, 16
               

               
Conread position:
               
332-504
               

               
Cow position:
               
chr28:11305598-11305432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
332-508
               

               
Cow position:
               
chr28:16857072-16856898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
332-510
               

               
Cow position:
               
chr28:19994915-19994736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
332-512
               

               
Cow position:
               
chr28:10297886-10298058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
157, 85
               

               
Conread position:
               
332-521
               

               
Cow position:
               
chr28:9677704-9677883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
332-527
               

               
Cow position:
               
chr28:28903525-28903330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
169, 99
               

               
Conread position:
               
333-512
               

               
Cow position:
               
chr28:6301117-6301296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
334-512
               

               
Cow position:
               
chr28:16200706-16200528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
334-525
               

               
Cow position:
               
chr28:34830192-34830383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
175, 11
               

               
Conread position:
               
335-535
               

               
Cow position:
               
chr28:27787602-27787797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
12, 64
               

               
Conread position:
               
337-489
               

               
Cow position:
               
chr28:16569845-16569993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
337-504
               

               
Cow position:
               
chr28:10762934-10763092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
337-504
               

               
Cow position:
               
chr28:17738113-17737946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
337-512
               

               
Cow position:
               
chr28:4077306-4077126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 175
               

               
Conread position:
               
337-545
               

               
Cow position:
               
chr28:26960869-26960667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
176, 68
               

               
Conread position:
               
338-487
               

               
Cow position:
               
chr28:8656125-8655979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
338-507
               

               
Cow position:
               
chr28:21765996-21766162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
338-512
               

               
Cow position:
               
chr28:19394912-19395075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
338-525
               

               
Cow position:
               
chr28:13356331-13356145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
16, 171
               

               
Conread position:
               
338-525
               

               
Cow position:
               
chr28:29500441-29500636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
338-530
               

               
Cow position:
               
chr28:16252364-16252176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
165, 33
               

               
Conread position:
               
343-510
               

               
Cow position:
               
chr28:11310054-11309883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 147
               

               
Conread position:
               
343-513
               

               
Cow position:
               
chr28:21118723-21118893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
343-525
               

               
Cow position:
               
chr28:4866527-4866356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
345-525
               

               
Cow position:
               
chr28:19015754-19015929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
170, 38
               

               
Conread position:
               
347-504
               

               
Cow position:
               
chr28:24238427-24238280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
347-512
               

               
Cow position:
               
chr28:26304113-26304279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
68, 125
               

               
Conread position:
               
350-512
               

               
Cow position:
               
chr28:24767457-24767621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
351-504
               

               
Cow position:
               
chr28:13174502-13174350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 82
               

               
Conread position:
               
352-512
               

               
Cow position:
               
chr28:3311169-3311008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
353-502
               

               
Cow position:
               
chr28:7523360-7523213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
353-503
               

               
Cow position:
               
chr28:21263213-21263357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
353-504
               

               
Cow position:
               
chr28:4588374-4588518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
354-504
               

               
Cow position:
               
chr28:134029-133876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 127
               

               
Conread position:
               
355-516
               

               
Cow position:
               
chr28:16419583-16419741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
356-499
               

               
Cow position:
               
chr28:3257047-3257189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
356-499
               

               
Cow position:
               
chr28:22183082-22182934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
356-504
               

               
Cow position:
               
chr28:23728246-23728105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
356-524
               

               
Cow position:
               
chr28:16159812-16159645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
147, 53
               

               
Conread position:
               
356-525
               

               
Cow position:
               
chr28:14947774-14947938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
69, 122
               

               
Conread position:
               
358-501
               

               
Cow position:
               
chr28:22278571-22278424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
363-536
               

               
Cow position:
               
chr28:5294936-5294766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
364-511
               

               
Cow position:
               
chr28:15411747-15411892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
365-512
               

               
Cow position:
               
chr28:5428686-5428548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
365-512
               

               
Cow position:
               
chr28:8165148-8165000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
376-498
               

               
Cow position:
               
chr28:16450456-16450334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
377-515
               

               
Cow position:
               
chr28:18761930-18761794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
377-540
               

               
Cow position:
               
chr28:16964887-16964723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
390-539
               

               
Cow position:
               
chr28:9920077-9919930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
391-529
               

               
Cow position:
               
chr28:27941689-27941557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               
Show alignments to all cow chromosomes.