Non-Coding RNA Search

Cow genome map


           Conread name:
           Pig1-44A05
        

               Conread position:
               1-426
               

               Cow position:
               chr4:2141426-2141851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               294
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               10, 191
               

               Conread position:
               2-449
               

               Cow position:
               chr4:21392113-21391677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 12
               

               Conread position:
               2-504
               

               Cow position:
               chr4:12591527-12591029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 144
               

               Conread position:
               2-512
               

               Cow position:
               chr4:60897589-60897095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 143
               

               Conread position:
               2-515
               

               Cow position:
               chr4:65919306-65919819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 44
               

               Conread position:
               2-519
               

               Cow position:
               chr4:25226614-25227142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               550
               

               Alignm identity:
               359
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               2-522
               

               Cow position:
               chr4:17833221-17832685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 409
               

               Conread position:
               3-142
               

               Cow position:
               chr4:48212788-48212651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               77, 33
               

               Conread position:
               3-166
               

               Cow position:
               chr4:48409874-48409707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               66, 138
               

               Conread position:
               3-186
               

               Cow position:
               chr4:26009131-26009324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               3-198
               

               Cow position:
               chr4:10993859-10993667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               141, 48
               

               Conread position:
               3-220
               

               Cow position:
               chr4:26549141-26549365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               34, 148
               

               Conread position:
               3-258
               

               Cow position:
               chr4:42232353-42232608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               117, 72
               

               Conread position:
               3-263
               

               Cow position:
               chr4:29813848-29813590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               51, 108
               

               Conread position:
               3-269
               

               Cow position:
               chr4:11090995-11090738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               197
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               200, 32
               

               Conread position:
               3-269
               

               Cow position:
               chr4:47773947-47773681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               231, 221
               

               Conread position:
               3-272
               

               Cow position:
               chr4:43543049-43542772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               15, 11
               

               Conread position:
               3-276
               

               Cow position:
               chr4:14159439-14159158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               74, 143
               

               Conread position:
               3-282
               

               Cow position:
               chr4:24119226-24118934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               65, 258
               

               Conread position:
               3-284
               

               Cow position:
               chr4:13271833-13272118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               77, 192
               

               Conread position:
               3-285
               

               Cow position:
               chr4:54501764-54501472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               78, 187
               

               Conread position:
               3-286
               

               Cow position:
               chr4:43370165-43369873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 140
               

               Conread position:
               3-299
               

               Cow position:
               chr4:1915890-1915588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               219
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               78, 39
               

               Conread position:
               3-303
               

               Cow position:
               chr4:30574141-30574444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 139
               

               Conread position:
               3-307
               

               Cow position:
               chr4:23060321-23059998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               234
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               53, 276
               

               Conread position:
               3-308
               

               Cow position:
               chr4:37553359-37553040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               79, 99
               

               Conread position:
               3-308
               

               Cow position:
               chr4:53999835-53999511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               76, 156
               

               Conread position:
               3-310
               

               Cow position:
               chr4:561087-561402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               147, 30
               

               Conread position:
               3-310
               

               Cow position:
               chr4:22215971-22215652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               48, 94
               

               Conread position:
               3-315
               

               Cow position:
               chr4:48137599-48137918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 58
               

               Conread position:
               3-315
               

               Cow position:
               chr4:56233377-56233688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               225
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               141, 20
               

               Conread position:
               3-315
               

               Cow position:
               chr4:56409867-56410184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               59, 86
               

               Conread position:
               3-324
               

               Cow position:
               chr4:53208924-53209252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               231
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               141, 78
               

               Conread position:
               3-326
               

               Cow position:
               chr4:11901875-11901544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               238
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               73, 34
               

               Conread position:
               3-331
               

               Cow position:
               chr4:5984360-5984024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               78, 98
               

               Conread position:
               3-341
               

               Cow position:
               chr4:11671139-11671484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               74, 17
               

               Conread position:
               3-350
               

               Cow position:
               chr4:37620202-37619847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 68
               

               Conread position:
               3-361
               

               Cow position:
               chr4:7501571-7501921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               242
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               215, 69
               

               Conread position:
               3-395
               

               Cow position:
               chr4:62772252-62771834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 203
               

               Conread position:
               3-399
               

               Cow position:
               chr4:16602368-16601973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 110
               

               Conread position:
               3-403
               

               Cow position:
               chr4:19313690-19314107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               3-406
               

               Cow position:
               chr4:25983923-25984317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               78, 33
               

               Conread position:
               3-411
               

               Cow position:
               chr4:37935596-37935183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 159
               

               Conread position:
               3-414
               

               Cow position:
               chr4:20612-21017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               282
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               128, 13
               

               Conread position:
               3-415
               

               Cow position:
               chr4:18255549-18255958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 142
               

               Conread position:
               3-419
               

               Cow position:
               chr4:3850242-3850661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 23
               

               Conread position:
               3-424
               

               Cow position:
               chr4:43866162-43865742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 13
               

               Conread position:
               3-425
               

               Cow position:
               chr4:25879082-25879506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 33
               

               Conread position:
               3-425
               

               Cow position:
               chr4:45644628-45644203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               280
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               77, 192
               

               Conread position:
               3-427
               

               Cow position:
               chr4:41441250-41441683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 268
               

               Conread position:
               3-430
               

               Cow position:
               chr4:11872227-11871801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 191
               

               Conread position:
               3-431
               

               Cow position:
               chr4:1495716-1495287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               299
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               59, 53
               

               Conread position:
               3-431
               

               Cow position:
               chr4:9815664-9815223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               294
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               78, 33
               

               Conread position:
               3-435
               

               Cow position:
               chr4:10905772-10905344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 41
               

               Conread position:
               3-437
               

               Cow position:
               chr4:10055896-10056336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 161
               

               Conread position:
               3-438
               

               Cow position:
               chr4:41301315-41300869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               303
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               41, 284
               

               Conread position:
               3-438
               

               Cow position:
               chr4:44782059-44782503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 137
               

               Conread position:
               3-438
               

               Cow position:
               chr4:65650436-65650006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 40
               

               Conread position:
               3-442
               

               Cow position:
               chr4:26400642-26401087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 274
               

               Conread position:
               3-466
               

               Cow position:
               chr4:36893041-36893521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 33
               

               Conread position:
               3-472
               

               Cow position:
               chr4:45738794-45738304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 33
               

               Conread position:
               3-482
               

               Cow position:
               chr4:12003908-12004387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 143
               

               Conread position:
               3-490
               

               Cow position:
               chr4:1060577-1060102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 99
               

               Conread position:
               3-490
               

               Cow position:
               chr4:5610384-5609914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 34
               

               Conread position:
               3-490
               

               Cow position:
               chr4:26323427-26323921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 33
               

               Conread position:
               3-490
               

               Cow position:
               chr4:66173109-66172618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 33
               

               Conread position:
               3-499
               

               Cow position:
               chr4:32260162-32259653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 131
               

               Conread position:
               3-500
               

               Cow position:
               chr4:19597629-19597145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 89
               

               Conread position:
               3-500
               

               Cow position:
               chr4:21873883-21874365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 146
               

               Conread position:
               3-500
               

               Cow position:
               chr4:25369804-25370281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               336
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               78, 33
               

               Conread position:
               3-500
               

               Cow position:
               chr4:27276858-27276358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 147
               

               Conread position:
               3-500
               

               Cow position:
               chr4:45589902-45589408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 81
               

               Conread position:
               3-502
               

               Cow position:
               chr4:25354239-25354717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 53
               

               Conread position:
               3-502
               

               Cow position:
               chr4:37915644-37915149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 68
               

               Conread position:
               3-504
               

               Cow position:
               chr4:3388233-3388733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 77
               

               Conread position:
               3-504
               

               Cow position:
               chr4:5777347-5776851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               335
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               48, 144
               

               Conread position:
               3-504
               

               Cow position:
               chr4:10731904-10732413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 281
               

               Conread position:
               3-504
               

               Cow position:
               chr4:15904786-15905297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 41
               

               Conread position:
               3-504
               

               Cow position:
               chr4:22138549-22138025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 14
               

               Conread position:
               3-504
               

               Cow position:
               chr4:30974022-30974525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 194
               

               Conread position:
               3-504
               

               Cow position:
               chr4:31136438-31136946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 146
               

               Conread position:
               3-504
               

               Cow position:
               chr4:49794366-49794841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 53
               

               Conread position:
               3-504
               

               Cow position:
               chr4:59871190-59871671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 39
               

               Conread position:
               3-505
               

               Cow position:
               chr4:19096980-19097481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 31
               

               Conread position:
               3-505
               

               Cow position:
               chr4:23655679-23656165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               331
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               78, 144
               

               Conread position:
               3-505
               

               Cow position:
               chr4:68387480-68387980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               330
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               141, 33
               

               Conread position:
               3-507
               

               Cow position:
               chr4:2681053-2681523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 33
               

               Conread position:
               3-507
               

               Cow position:
               chr4:19237927-19238412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 33
               

               Conread position:
               3-507
               

               Cow position:
               chr4:68076843-68076345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 125
               

               Conread position:
               3-508
               

               Cow position:
               chr4:9445004-9444487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 111
               

               Conread position:
               3-508
               

               Cow position:
               chr4:25197812-25197295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 142
               

               Conread position:
               3-510
               

               Cow position:
               chr4:42424116-42423612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 194
               

               Conread position:
               3-511
               

               Cow position:
               chr4:570481-570986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 175
               

               Conread position:
               3-512
               

               Cow position:
               chr4:22010373-22009868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 58
               

               Conread position:
               3-512
               

               Cow position:
               chr4:22073626-22073118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 130
               

               Conread position:
               3-512
               

               Cow position:
               chr4:56240161-56239665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 144
               

               Conread position:
               3-515
               

               Cow position:
               chr4:13327269-13326750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 33
               

               Conread position:
               3-515
               

               Cow position:
               chr4:28836217-28836740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 8
               

               Conread position:
               3-520
               

               Cow position:
               chr4:15872036-15871533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 16
               

               Conread position:
               3-521
               

               Cow position:
               chr4:18974125-18974637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 33
               

               Conread position:
               3-522
               

               Cow position:
               chr4:40414946-40414422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 127
               

               Conread position:
               3-522
               

               Cow position:
               chr4:51903286-51903817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 144
               

               Conread position:
               3-522
               

               Cow position:
               chr4:53125822-53126314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 80
               

               Conread position:
               3-525
               

               Cow position:
               chr4:3687610-3688142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 146
               

               Conread position:
               3-525
               

               Cow position:
               chr4:11099980-11099450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 54
               

               Conread position:
               3-526
               

               Cow position:
               chr4:42672856-42673391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 203
               

               Conread position:
               3-527
               

               Cow position:
               chr4:23647158-23646655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 271
               

               Conread position:
               3-529
               

               Cow position:
               chr4:10916152-10915614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 75
               

               Conread position:
               3-529
               

               Cow position:
               chr4:58248096-58248617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 40
               

               Conread position:
               3-531
               

               Cow position:
               chr4:509213-508697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 146
               

               Conread position:
               3-531
               

               Cow position:
               chr4:7430007-7430523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 33
               

               Conread position:
               3-535
               

               Cow position:
               chr4:15635758-15635228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 108
               

               Conread position:
               4-269
               

               Cow position:
               chr4:57555652-57555932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               4-368
               

               Cow position:
               chr4:27540307-27540678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 142
               

               Conread position:
               4-415
               

               Cow position:
               chr4:63459529-63459117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               274
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               139, 185
               

               Conread position:
               4-417
               

               Cow position:
               chr4:28151217-28151636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               264
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               153, 13
               

               Conread position:
               4-418
               

               Cow position:
               chr4:27755619-27755195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               77, 48
               

               Conread position:
               4-435
               

               Cow position:
               chr4:19007726-19008172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 33
               

               Conread position:
               4-499
               

               Cow position:
               chr4:13589780-13590273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 32
               

               Conread position:
               4-503
               

               Cow position:
               chr4:48485679-48486186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 201
               

               Conread position:
               4-504
               

               Cow position:
               chr4:19584390-19584905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 290
               

               Conread position:
               4-504
               

               Cow position:
               chr4:48152683-48152180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 195
               

               Conread position:
               4-510
               

               Cow position:
               chr4:24372165-24371657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 173
               

               Conread position:
               4-512
               

               Cow position:
               chr4:4085443-4084909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 18
               

               Conread position:
               4-512
               

               Cow position:
               chr4:47730557-47731063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 26
               

               Conread position:
               4-512
               

               Cow position:
               chr4:62471754-62472274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 142
               

               Conread position:
               4-514
               

               Cow position:
               chr4:54190793-54191305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 38
               

               Conread position:
               4-529
               

               Cow position:
               chr4:34166279-34165772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 30
               

               Conread position:
               5-278
               

               Cow position:
               chr4:56514248-56513974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               77, 41
               

               Conread position:
               5-348
               

               Cow position:
               chr4:60371145-60370787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               75, 31
               

               Conread position:
               5-385
               

               Cow position:
               chr4:23853891-23854256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 6
               

               Conread position:
               5-406
               

               Cow position:
               chr4:24002282-24001870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 187
               

               Conread position:
               5-489
               

               Cow position:
               chr4:7258740-7258254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 202
               

               Conread position:
               5-500
               

               Cow position:
               chr4:3421333-3421811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 70
               

               Conread position:
               5-515
               

               Cow position:
               chr4:22101578-22101057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 10
               

               Conread position:
               7-493
               

               Cow position:
               chr4:68764206-68764699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               336
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               73, 95
               

               Conread position:
               7-520
               

               Cow position:
               chr4:51850884-51851418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 7
               

               Conread position:
               7-523
               

               Cow position:
               chr4:51898691-51899231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 200
               

               Conread position:
               8-500
               

               Cow position:
               chr4:68233671-68234150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 44
               

               Conread position:
               8-513
               

               Cow position:
               chr4:37342806-37343320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 7
               

               Conread position:
               10-444
               

               Cow position:
               chr4:961970-961513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               300
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               71, 37
               

               Conread position:
               11-265
               

               Cow position:
               chr4:53763422-53763166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               27, 34
               

               Conread position:
               11-317
               

               Cow position:
               chr4:53545722-53546037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               71, 138
               

               Conread position:
               11-437
               

               Cow position:
               chr4:44839192-44838767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 173
               

               Conread position:
               11-532
               

               Cow position:
               chr4:34209719-34210258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 84
               

               Conread position:
               12-445
               

               Cow position:
               chr4:46477244-46476810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 32
               

               Conread position:
               12-504
               

               Cow position:
               chr4:22236781-22236289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 138
               

               Conread position:
               13-514
               

               Cow position:
               chr4:13668918-13668417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 23
               

               Conread position:
               14-248
               

               Cow position:
               chr4:46668269-46668507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               68, 22
               

               Conread position:
               14-339
               

               Cow position:
               chr4:49424540-49424855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               67, 22
               

               Conread position:
               14-516
               

               Cow position:
               chr4:13693976-13693471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               341
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               136, 48
               

               Conread position:
               16-520
               

               Cow position:
               chr4:31023141-31023657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 58
               

               Conread position:
               17-157
               

               Cow position:
               chr4:19421033-19421170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               17-199
               

               Cow position:
               chr4:38945744-38945933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               17-366
               

               Cow position:
               chr4:39231824-39231464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 196
               

               Conread position:
               17-488
               

               Cow position:
               chr4:45662801-45662330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 122
               

               Conread position:
               17-504
               

               Cow position:
               chr4:49159074-49158601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               318
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               127, 19
               

               Conread position:
               17-508
               

               Cow position:
               chr4:23451397-23450894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 129
               

               Conread position:
               17-511
               

               Cow position:
               chr4:68944477-68943983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               333
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               59, 258
               

               Conread position:
               17-521
               

               Cow position:
               chr4:4319443-4318946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               332
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               94, 50
               

               Conread position:
               18-222
               

               Cow position:
               chr4:22072973-22072762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               63, 175
               

               Conread position:
               18-512
               

               Cow position:
               chr4:11187155-11187653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 132
               

               Conread position:
               19-498
               

               Cow position:
               chr4:53208005-53208468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 17
               

               Conread position:
               19-509
               

               Cow position:
               chr4:23526392-23526892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 131
               

               Conread position:
               20-490
               

               Cow position:
               chr4:45775639-45775153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 127
               

               Conread position:
               22-504
               

               Cow position:
               chr4:4084740-4084265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 14
               

               Conread position:
               22-504
               

               Cow position:
               chr4:53134315-53134788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 127
               

               Conread position:
               22-525
               

               Cow position:
               chr4:14414640-14414140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 47
               

               Conread position:
               23-335
               

               Cow position:
               chr4:22051762-22051445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               226
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               59, 29
               

               Conread position:
               24-268
               

               Cow position:
               chr4:22744031-22744279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               10, 29
               

               Conread position:
               24-466
               

               Cow position:
               chr4:38999136-38999578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 12
               

               Conread position:
               24-504
               

               Cow position:
               chr4:19541826-19542341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 219
               

               Conread position:
               24-524
               

               Cow position:
               chr4:41867150-41867656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 21
               

               Conread position:
               26-521
               

               Cow position:
               chr4:55271052-55270559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 63
               

               Conread position:
               28-339
               

               Cow position:
               chr4:24458389-24458073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               212
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               14, 106
               

               Conread position:
               28-513
               

               Cow position:
               chr4:51727793-51728273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 88
               

               Conread position:
               29-425
               

               Cow position:
               chr4:39128242-39128653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 23
               

               Conread position:
               29-535
               

               Cow position:
               chr4:15439304-15439810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 36
               

               Conread position:
               30-417
               

               Cow position:
               chr4:56570515-56570914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 72
               

               Conread position:
               30-513
               

               Cow position:
               chr4:10034616-10035104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               321
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               46, 116
               

               Conread position:
               31-525
               

               Cow position:
               chr4:7081985-7081490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               309
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               46, 116
               

               Conread position:
               32-392
               

               Cow position:
               chr4:17474151-17474522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 48
               

               Conread position:
               35-326
               

               Cow position:
               chr4:22849994-22849699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               9, 115
               

               Conread position:
               35-414
               

               Cow position:
               chr4:5461137-5460757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 47
               

               Conread position:
               35-425
               

               Cow position:
               chr4:25889119-25888719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 252
               

               Conread position:
               35-430
               

               Cow position:
               chr4:47348549-47348945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 73
               

               Conread position:
               37-326
               

               Cow position:
               chr4:30690443-30690732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               43, 107
               

               Conread position:
               38-441
               

               Cow position:
               chr4:12560755-12561174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               292
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               6, 33
               

               Conread position:
               38-496
               

               Cow position:
               chr4:4321286-4320810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 245
               

               Conread position:
               38-504
               

               Cow position:
               chr4:49629216-49629677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               318
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               6, 106
               

               Conread position:
               38-504
               

               Cow position:
               chr4:66548037-66547572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 93
               

               Conread position:
               40-490
               

               Cow position:
               chr4:46550106-46550566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 105
               

               Conread position:
               42-324
               

               Cow position:
               chr4:52167119-52166836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               79, 38
               

               Conread position:
               43-272
               

               Cow position:
               chr4:67392695-67392923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               61, 57
               

               Conread position:
               43-362
               

               Cow position:
               chr4:29237425-29237117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               33, 59
               

               Conread position:
               43-482
               

               Cow position:
               chr4:39455779-39456210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 103
               

               Conread position:
               43-500
               

               Cow position:
               chr4:59785041-59785507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 219
               

               Conread position:
               43-508
               

               Cow position:
               chr4:54937611-54938075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 154
               

               Conread position:
               43-525
               

               Cow position:
               chr4:52748733-52748252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 147
               

               Conread position:
               44-315
               

               Cow position:
               chr4:16637872-16637598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               100, 146
               

               Conread position:
               44-321
               

               Cow position:
               chr4:19438184-19438477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               37, 148
               

               Conread position:
               44-380
               

               Cow position:
               chr4:54930690-54930351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               38, 58
               

               Conread position:
               44-385
               

               Cow position:
               chr4:51739977-51739641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               32, 102
               

               Conread position:
               44-395
               

               Cow position:
               chr4:20139793-20139431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               107, 99
               

               Conread position:
               44-451
               

               Cow position:
               chr4:42480913-42481323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               277
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               32, 10
               

               Conread position:
               44-457
               

               Cow position:
               chr4:46456321-46455921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 50
               

               Conread position:
               44-504
               

               Cow position:
               chr4:27529839-27530303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 150
               

               Conread position:
               44-504
               

               Cow position:
               chr4:28772341-28771879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 210
               

               Conread position:
               44-504
               

               Cow position:
               chr4:44612729-44613196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 229
               

               Conread position:
               44-510
               

               Cow position:
               chr4:22345289-22344826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 103
               

               Conread position:
               46-418
               

               Cow position:
               chr4:34337534-34337162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               255
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               98, 32
               

               Conread position:
               46-437
               

               Cow position:
               chr4:51783908-51784310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 99
               

               Conread position:
               46-498
               

               Cow position:
               chr4:29805630-29805184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               311
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               76, 15
               

               Conread position:
               46-504
               

               Cow position:
               chr4:46060674-46061139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 86
               

               Conread position:
               47-314
               

               Cow position:
               chr4:26746213-26746488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               33, 99
               

               Conread position:
               47-361
               

               Cow position:
               chr4:20298998-20299326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               34, 148
               

               Conread position:
               47-498
               

               Cow position:
               chr4:7704578-7704131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               306
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               30, 72
               

               Conread position:
               47-508
               

               Cow position:
               chr4:203419-202947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 159
               

               Conread position:
               48-502
               

               Cow position:
               chr4:23445321-23444849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 54
               

               Conread position:
               49-203
               

               Cow position:
               chr4:14131247-14131401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               114, 93
               

               Conread position:
               49-352
               

               Cow position:
               chr4:63119500-63119196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               32, 123
               

               Conread position:
               50-268
               

               Cow position:
               chr4:43495634-43495862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               94, 143
               

               Conread position:
               50-433
               

               Cow position:
               chr4:46591394-46591794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 30
               

               Conread position:
               51-423
               

               Cow position:
               chr4:40823382-40822998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               30, 135
               

               Conread position:
               52-479
               

               Cow position:
               chr4:48235373-48235796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               305
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               24, 171
               

               Conread position:
               52-499
               

               Cow position:
               chr4:3340685-3341141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 148
               

               Conread position:
               52-503
               

               Cow position:
               chr4:35981723-35982188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 146
               

               Conread position:
               53-219
               

               Cow position:
               chr4:15462538-15462370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               28, 49
               

               Conread position:
               53-263
               

               Cow position:
               chr4:54667956-54667733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               53-379
               

               Cow position:
               chr4:33612628-33612289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               31, 91
               

               Conread position:
               53-431
               

               Cow position:
               chr4:46597118-46597490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 86
               

               Conread position:
               53-499
               

               Cow position:
               chr4:19699834-19700293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 148
               

               Conread position:
               53-504
               

               Cow position:
               chr4:34630637-34631098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 91
               

               Conread position:
               53-504
               

               Cow position:
               chr4:34641994-34641532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 153
               

               Conread position:
               53-511
               

               Cow position:
               chr4:8769845-8770292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 76
               

               Conread position:
               53-519
               

               Cow position:
               chr4:43895068-43894603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 14
               

               Conread position:
               53-522
               

               Cow position:
               chr4:23847316-23846846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 144
               

               Conread position:
               54-438
               

               Cow position:
               chr4:32725960-32726354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 26
               

               Conread position:
               54-502
               

               Cow position:
               chr4:19708678-19709132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 9
               

               Conread position:
               54-504
               

               Cow position:
               chr4:37691572-37691120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 48
               

               Conread position:
               54-512
               

               Cow position:
               chr4:10968649-10968198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 116
               

               Conread position:
               54-525
               

               Cow position:
               chr4:19316261-19315795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 27
               

               Conread position:
               55-504
               

               Cow position:
               chr4:10471960-10472406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               306
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               23, 135
               

               Conread position:
               56-502
               

               Cow position:
               chr4:43909490-43909954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 86
               

               Conread position:
               57-360
               

               Cow position:
               chr4:123462-123159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               20, 174
               

               Conread position:
               57-508
               

               Cow position:
               chr4:34310716-34310270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 219
               

               Conread position:
               57-512
               

               Cow position:
               chr4:1985388-1985850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 80
               

               Conread position:
               58-504
               

               Cow position:
               chr4:657079-656617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 89
               

               Conread position:
               58-533
               

               Cow position:
               chr4:3283709-3283234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 89
               

               Conread position:
               60-513
               

               Cow position:
               chr4:12676555-12676995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 88
               

               Conread position:
               61-220
               

               Cow position:
               chr4:2536576-2536737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               20, 29
               

               Conread position:
               61-261
               

               Cow position:
               chr4:12260039-12259828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               61-349
               

               Cow position:
               chr4:35940268-35939967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               221
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               83, 216
               

               Conread position:
               61-399
               

               Cow position:
               chr4:59008626-59008264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               61-438
               

               Cow position:
               chr4:58881223-58880833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               264
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               83, 132
               

               Conread position:
               61-500
               

               Cow position:
               chr4:3837022-3837455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               302
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               15, 137
               

               Conread position:
               61-513
               

               Cow position:
               chr4:23509331-23509790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 292
               

               Conread position:
               61-514
               

               Cow position:
               chr4:45367479-45367942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 20
               

               Conread position:
               61-529
               

               Cow position:
               chr4:31004661-31004192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               320
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               103, 84
               

               Conread position:
               62-438
               

               Cow position:
               chr4:19322335-19321951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 84
               

               Conread position:
               62-504
               

               Cow position:
               chr4:13255839-13256263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               307
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               6, 28
               

               Conread position:
               63-433
               

               Cow position:
               chr4:49089539-49089910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               268
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               19, 83
               

               Conread position:
               64-260
               

               Cow position:
               chr4:41292234-41292029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               12, 134
               

               Conread position:
               64-357
               

               Cow position:
               chr4:44025071-44024776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               205
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               17, 5
               

               Conread position:
               64-415
               

               Cow position:
               chr4:65842015-65841662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               234
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               17, 5
               

               Conread position:
               64-419
               

               Cow position:
               chr4:41186159-41185810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               244
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               67, 5
               

               Conread position:
               64-435
               

               Cow position:
               chr4:42922100-42921736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               259
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               12, 80
               

               Conread position:
               64-470
               

               Cow position:
               chr4:62921111-62920719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               264
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               17, 85
               

               Conread position:
               65-475
               

               Cow position:
               chr4:11004968-11004572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               264
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               111, 25
               

               Conread position:
               68-258
               

               Cow position:
               chr4:53447916-53447718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               13, 80
               

               Conread position:
               71-388
               

               Cow position:
               chr4:21233118-21232795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               10, 80
               

               Conread position:
               71-504
               

               Cow position:
               chr4:29291275-29291697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 71
               

               Conread position:
               75-268
               

               Cow position:
               chr4:46370568-46370775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               75-324
               

               Cow position:
               chr4:65538650-65538402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               128, 62
               

               Conread position:
               75-409
               

               Cow position:
               chr4:14919757-14920086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               241
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               49, 55
               

               Conread position:
               75-490
               

               Cow position:
               chr4:21531883-21531463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 39
               

               Conread position:
               75-507
               

               Cow position:
               chr4:34383579-34383142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 63
               

               Conread position:
               75-514
               

               Cow position:
               chr4:11897541-11897101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 70
               

               Conread position:
               75-527
               

               Cow position:
               chr4:54455586-54455126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               317
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               75, 68
               

               Conread position:
               76-504
               

               Cow position:
               chr4:26659064-26659491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 39
               

               Conread position:
               77-504
               

               Cow position:
               chr4:56590789-56591233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 212
               

               Conread position:
               77-508
               

               Cow position:
               chr4:12127883-12127444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               301
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               77, 155
               

               Conread position:
               78-321
               

               Cow position:
               chr4:27687684-27687939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               80-268
               

               Cow position:
               chr4:43295929-43295734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               125, 62
               

               Conread position:
               84-428
               

               Cow position:
               chr4:37344666-37344309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               22, 17
               

               Conread position:
               84-434
               

               Cow position:
               chr4:8704751-8705120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               256
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               60, 108
               

               Conread position:
               85-309
               

               Cow position:
               chr4:41908024-41907801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               59, 104
               

               Conread position:
               86-454
               

               Cow position:
               chr4:2601998-2602377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               265
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               5, 275
               

               Conread position:
               87-500
               

               Cow position:
               chr4:13222406-13221993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 58
               

               Conread position:
               88-444
               

               Cow position:
               chr4:22860935-22860575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               134, 59
               

               Conread position:
               94-326
               

               Cow position:
               chr4:37465807-37465577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               94-378
               

               Cow position:
               chr4:44973419-44973703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               84, 51
               

               Conread position:
               95-504
               

               Cow position:
               chr4:16762954-16762528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 14
               

               Conread position:
               95-512
               

               Cow position:
               chr4:10999926-10999509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 183
               

               Conread position:
               101-504
               

               Cow position:
               chr4:48321812-48322228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 44
               

               Conread position:
               101-505
               

               Cow position:
               chr4:13344324-13344728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 105
               

               Conread position:
               103-315
               

               Cow position:
               chr4:36724828-36725047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               100, 42
               

               Conread position:
               104-500
               

               Cow position:
               chr4:38935145-38935545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 41
               

               Conread position:
               107-447
               

               Cow position:
               chr4:1354824-1354478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 38
               

               Conread position:
               108-504
               

               Cow position:
               chr4:85486-85885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               267
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               43, 37
               

               Conread position:
               108-511
               

               Cow position:
               chr4:13284167-13284581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 189
               

               Conread position:
               111-504
               

               Cow position:
               chr4:51768906-51769296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 161
               

               Conread position:
               114-518
               

               Cow position:
               chr4:28839422-28839817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               270
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               31, 80
               

               Conread position:
               115-444
               

               Cow position:
               chr4:34369655-34369313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               117-504
               

               Cow position:
               chr4:34022782-34022395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               263
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               89, 31
               

               Conread position:
               117-507
               

               Cow position:
               chr4:61389274-61388874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               277
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               34, 29
               

               Conread position:
               119-441
               

               Cow position:
               chr4:13941261-13941589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               25, 164
               

               Conread position:
               119-485
               

               Cow position:
               chr4:16593885-16594248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               263
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               25, 86
               

               Conread position:
               119-499
               

               Cow position:
               chr4:19408198-19407805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               267
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               42, 26
               

               Conread position:
               127-504
               

               Cow position:
               chr4:17774541-17774174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               24, 5
               

               Conread position:
               129-512
               

               Cow position:
               chr4:22907336-22907697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               261
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               34, 10
               

               Conread position:
               138-496
               

               Cow position:
               chr4:43740345-43740714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               261
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               57, 289
               

               Conread position:
               138-504
               

               Cow position:
               chr4:45077249-45076888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 25
               

               Conread position:
               139-515
               

               Cow position:
               chr4:68569827-68569439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               32, 15
               

               Conread position:
               145-504
               

               Cow position:
               chr4:41371109-41370750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 41
               

               Conread position:
               145-508
               

               Cow position:
               chr4:22713660-22713301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 122
               

               Conread position:
               146-500
               

               Cow position:
               chr4:19501252-19500901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 44
               

               Conread position:
               149-438
               

               Cow position:
               chr4:30791803-30792095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               30, 103
               

               Conread position:
               149-490
               

               Cow position:
               chr4:54479069-54478737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               56, 41
               

               Conread position:
               149-504
               

               Cow position:
               chr4:20147020-20147376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 41
               

               Conread position:
               149-504
               

               Cow position:
               chr4:38944426-38944067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               254
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               56, 41
               

               Conread position:
               149-504
               

               Cow position:
               chr4:43515561-43515914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               56, 41
               

               Conread position:
               149-511
               

               Cow position:
               chr4:27632288-27632639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 12
               

               Conread position:
               149-513
               

               Cow position:
               chr4:32459027-32458656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 10
               

               Conread position:
               149-522
               

               Cow position:
               chr4:45685303-45685660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 121
               

               Conread position:
               149-525
               

               Cow position:
               chr4:2099468-2099845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 77
               

               Conread position:
               149-529
               

               Cow position:
               chr4:25356467-25356117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               56, 26
               

               Conread position:
               149-529
               

               Cow position:
               chr4:52823569-52823189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 12
               

               Conread position:
               149-534
               

               Cow position:
               chr4:31506197-31505797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               150-362
               

               Cow position:
               chr4:38705940-38705720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               14, 180
               

               Conread position:
               150-502
               

               Cow position:
               chr4:17186517-17186159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 40
               

               Conread position:
               152-438
               

               Cow position:
               chr4:59377753-59378038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               209
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               25, 9
               

               Conread position:
               154-459
               

               Cow position:
               chr4:65950488-65950803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               222
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               24, 130
               

               Conread position:
               154-525
               

               Cow position:
               chr4:36290468-36290837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               263
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               51, 36
               

               Conread position:
               162-415
               

               Cow position:
               chr4:21063929-21063684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               42, 34
               

               Conread position:
               162-504
               

               Cow position:
               chr4:37732638-37732288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 127
               

               Conread position:
               162-537
               

               Cow position:
               chr4:61313360-61312978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               269
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               18, 110
               

               Conread position:
               163-504
               

               Cow position:
               chr4:47262381-47262728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               237
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               16, 87
               

               Conread position:
               166-490
               

               Cow position:
               chr4:54171474-54171802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               240
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               13, 117
               

               Conread position:
               166-504
               

               Cow position:
               chr4:20125138-20124777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               268
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               13, 289
               

               Conread position:
               167-500
               

               Cow position:
               chr4:36577777-36577424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               244
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               36, 23
               

               Conread position:
               167-504
               

               Cow position:
               chr4:54524477-54524139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               38, 23
               

               Conread position:
               167-525
               

               Cow position:
               chr4:45249829-45250190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 35
               

               Conread position:
               168-512
               

               Cow position:
               chr4:54927586-54927231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               8, 22
               

               Conread position:
               169-490
               

               Cow position:
               chr4:4826980-4827310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               27, 99
               

               Conread position:
               169-524
               

               Cow position:
               chr4:18756288-18756649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               36, 27
               

               Conread position:
               174-508
               

               Cow position:
               chr4:19578262-19578578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               239
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               31, 94
               

               Conread position:
               174-537
               

               Cow position:
               chr4:31859127-31859489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               31, 96
               

               Conread position:
               176-415
               

               Cow position:
               chr4:15134350-15134093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               16, 78
               

               Conread position:
               176-537
               

               Cow position:
               chr4:52779716-52780070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               262
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               29, 13
               

               Conread position:
               181-503
               

               Cow position:
               chr4:13026176-13026484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               9, 35
               

               Conread position:
               185-437
               

               Cow position:
               chr4:47280009-47280255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               20, 38
               

               Conread position:
               186-508
               

               Cow position:
               chr4:7043952-7043622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               236
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               19, 82
               

               Conread position:
               186-511
               

               Cow position:
               chr4:12473721-12474048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               232
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               19, 102
               

               Conread position:
               189-475
               

               Cow position:
               chr4:25537419-25537712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               17, 198
               

               Conread position:
               189-500
               

               Cow position:
               chr4:34700164-34699857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               16, 156
               

               Conread position:
               189-503
               

               Cow position:
               chr4:1419096-1419414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               16, 144
               

               Conread position:
               189-514
               

               Cow position:
               chr4:8182757-8182434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               232
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               132, 40
               

               Conread position:
               190-421
               

               Cow position:
               chr4:24481789-24481561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               15, 82
               

               Conread position:
               190-514
               

               Cow position:
               chr4:56499004-56498670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               240
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               15, 135
               

               Conread position:
               190-525
               

               Cow position:
               chr4:59873306-59873638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               15, 88
               

               Conread position:
               191-546
               

               Cow position:
               chr4:38946084-38946449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               14, 328
               

               Conread position:
               192-507
               

               Cow position:
               chr4:45837750-45837435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               13, 44
               

               Conread position:
               194-533
               

               Cow position:
               chr4:5577324-5576999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               11, 73
               

               Conread position:
               195-513
               

               Cow position:
               chr4:32693672-32693988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               225
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               80, 29
               

               Conread position:
               199-500
               

               Cow position:
               chr4:19102993-19102689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 25
               

               Conread position:
               202-438
               

               Cow position:
               chr4:19098357-19098601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               202-529
               

               Cow position:
               chr4:12901666-12901341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               230
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               21, 72
               

               Conread position:
               206-529
               

               Cow position:
               chr4:19573185-19573505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               221
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               202, 9
               

               Conread position:
               210-512
               

               Cow position:
               chr4:48902718-48902413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               225
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               82, 18
               

               Conread position:
               210-525
               

               Cow position:
               chr4:45705947-45706253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               213-512
               

               Cow position:
               chr4:47038672-47038968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               215-504
               

               Cow position:
               chr4:2774625-2774914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               212
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               136, 9
               

               Conread position:
               215-514
               

               Cow position:
               chr4:19292627-19292915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               266, 184
               

               Conread position:
               215-525
               

               Cow position:
               chr4:37675523-37675838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               60, 9
               

               Conread position:
               215-533
               

               Cow position:
               chr4:11610784-11611089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               227, 9
               

               Conread position:
               217-504
               

               Cow position:
               chr4:38921860-38921573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               77, 13
               

               Conread position:
               218-431
               

               Cow position:
               chr4:47510300-47510506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               218-500
               

               Cow position:
               chr4:45013254-45012966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               169, 43
               

               Conread position:
               218-500
               

               Cow position:
               chr4:46494206-46494488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               201
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               100, 54
               

               Conread position:
               218-515
               

               Cow position:
               chr4:46136661-46136951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               228, 54
               

               Conread position:
               218-525
               

               Cow position:
               chr4:22546928-22546629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               218
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               284, 49
               

               Conread position:
               218-529
               

               Cow position:
               chr4:48104655-48104351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               74, 33
               

               Conread position:
               224-504
               

               Cow position:
               chr4:59002216-59001947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               226-414
               

               Cow position:
               chr4:63472156-63471970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               226-423
               

               Cow position:
               chr4:45563660-45563860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               83, 51
               

               Conread position:
               226-475
               

               Cow position:
               chr4:61188952-61188704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               44, 55
               

               Conread position:
               226-512
               

               Cow position:
               chr4:38822400-38822119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               208
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               57, 71
               

               Conread position:
               227-504
               

               Cow position:
               chr4:38157172-38156902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               47, 202
               

               Conread position:
               227-512
               

               Cow position:
               chr4:46566555-46566271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               41, 203
               

               Conread position:
               227-512
               

               Cow position:
               chr4:68391571-68391285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               71, 110
               

               Conread position:
               227-514
               

               Cow position:
               chr4:44773127-44772837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               228-517
               

               Cow position:
               chr4:65549113-65548828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               54, 93
               

               Conread position:
               228-518
               

               Cow position:
               chr4:19430280-19430569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               60, 185
               

               Conread position:
               229-512
               

               Cow position:
               chr4:19199371-19199084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               205
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               230-542
               

               Cow position:
               chr4:33181456-33181780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               68, 247
               

               Conread position:
               232-431
               

               Cow position:
               chr4:54921164-54920968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               164, 89
               

               Conread position:
               234-488
               

               Cow position:
               chr4:66380417-66380161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               40, 193
               

               Conread position:
               237-499
               

               Cow position:
               chr4:44184182-44183934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               237-503
               

               Cow position:
               chr4:3853396-3853669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               54, 21
               

               Conread position:
               237-504
               

               Cow position:
               chr4:69290810-69290550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               192
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               237-505
               

               Cow position:
               chr4:52576291-52576551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               231, 34
               

               Conread position:
               237-511
               

               Cow position:
               chr4:13608390-13608662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               191, 34
               

               Conread position:
               237-536
               

               Cow position:
               chr4:20142979-20142688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               33, 116
               

               Conread position:
               238-500
               

               Cow position:
               chr4:26012326-26012599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               72, 131
               

               Conread position:
               238-500
               

               Cow position:
               chr4:26830632-26830905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               72, 131
               

               Conread position:
               238-500
               

               Cow position:
               chr4:62370246-62370496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               244-500
               

               Cow position:
               chr4:19485235-19485492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               124, 28
               

               Conread position:
               244-522
               

               Cow position:
               chr4:28841350-28841629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               29, 225
               

               Conread position:
               247-525
               

               Cow position:
               chr4:47748354-47748626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               34, 13
               

               Conread position:
               252-504
               

               Cow position:
               chr4:68456975-68456725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               145, 14
               

               Conread position:
               257-504
               

               Cow position:
               chr4:65173049-65173293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               14, 152
               

               Conread position:
               258-511
               

               Cow position:
               chr4:19431748-19431493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               16, 147
               

               Conread position:
               259-504
               

               Cow position:
               chr4:67393045-67393286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               259-525
               

               Cow position:
               chr4:14994117-14994385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               226, 258
               

               Conread position:
               260-504
               

               Cow position:
               chr4:13131424-13131672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               16, 195
               

               Conread position:
               260-519
               

               Cow position:
               chr4:42232072-42231826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               241, 77
               

               Conread position:
               261-508
               

               Cow position:
               chr4:65463547-65463318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               261-519
               

               Cow position:
               chr4:19118970-19119228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               246, 19
               

               Conread position:
               261-519
               

               Cow position:
               chr4:38350246-38349988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               123, 15
               

               Conread position:
               261-519
               

               Cow position:
               chr4:60527131-60527388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               27, 175
               

               Conread position:
               267-502
               

               Cow position:
               chr4:27698991-27699229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               162, 28
               

               Conread position:
               268-512
               

               Cow position:
               chr4:68590736-68590968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               268-540
               

               Cow position:
               chr4:46883715-46883440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               270-521
               

               Cow position:
               chr4:60303054-60302808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               78, 160
               

               Conread position:
               271-431
               

               Cow position:
               chr4:36744542-36744700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               52, 66
               

               Conread position:
               272-503
               

               Cow position:
               chr4:43542507-43542292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               272-504
               

               Cow position:
               chr4:10895870-10895637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               18, 24
               

               Conread position:
               272-504
               

               Cow position:
               chr4:65753287-65753047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               69, 9
               

               Conread position:
               272-522
               

               Cow position:
               chr4:1646129-1645872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               157, 137
               

               Conread position:
               272-522
               

               Cow position:
               chr4:31177790-31178031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               272-525
               

               Cow position:
               chr4:38210012-38209769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               150, 0
               

               Conread position:
               272-529
               

               Cow position:
               chr4:7698229-7698481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               272-529
               

               Cow position:
               chr4:47305040-47305294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 24
               

               Conread position:
               273-530
               

               Cow position:
               chr4:3407619-3407875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               138, 100
               

               Conread position:
               274-498
               

               Cow position:
               chr4:48381346-48381575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               154, 62
               

               Conread position:
               274-517
               

               Cow position:
               chr4:50687896-50687661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               18, 22
               

               Conread position:
               274-523
               

               Cow position:
               chr4:58018309-58018552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               18, 22
               

               Conread position:
               274-533
               

               Cow position:
               chr4:44854325-44854064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               227, 26
               

               Conread position:
               276-539
               

               Cow position:
               chr4:61608997-61608741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               252, 7
               

               Conread position:
               277-480
               

               Cow position:
               chr4:41899939-41900135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               277-504
               

               Cow position:
               chr4:17051319-17051093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               40, 33
               

               Conread position:
               277-514
               

               Cow position:
               chr4:45910009-45909760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               135, 128
               

               Conread position:
               281-512
               

               Cow position:
               chr4:6094094-6093863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               222, 92
               

               Conread position:
               281-523
               

               Cow position:
               chr4:19333358-19333593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               282-496
               

               Cow position:
               chr4:386419-386211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               285-512
               

               Cow position:
               chr4:27521529-27521759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               176
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               7, 11
               

               Conread position:
               286-474
               

               Cow position:
               chr4:44786019-44786199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               286-490
               

               Cow position:
               chr4:51192944-51193153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               286-502
               

               Cow position:
               chr4:46560157-46560368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               107, 85
               

               Conread position:
               286-504
               

               Cow position:
               chr4:13918958-13919170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               195, 41
               

               Conread position:
               286-523
               

               Cow position:
               chr4:60363327-60363558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               133, 72
               

               Conread position:
               286-533
               

               Cow position:
               chr4:45213213-45212968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               59, 41
               

               Conread position:
               286-538
               

               Cow position:
               chr4:56745968-56746217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               6, 10
               

               Conread position:
               287-493
               

               Cow position:
               chr4:34653891-34653695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               287-523
               

               Cow position:
               chr4:34983519-34983288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               7, 40
               

               Conread position:
               288-472
               

               Cow position:
               chr4:45862397-45862572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               289-437
               

               Cow position:
               chr4:61926711-61926563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               11, 79
               

               Conread position:
               289-508
               

               Cow position:
               chr4:26959990-26959771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 122
               

               Conread position:
               289-510
               

               Cow position:
               chr4:6073070-6072854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               7, 17
               

               Conread position:
               294-504
               

               Cow position:
               chr4:1236888-1236665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               133, 111
               

               Conread position:
               295-502
               

               Cow position:
               chr4:41907596-41907393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               295-504
               

               Cow position:
               chr4:18099076-18098870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               295-504
               

               Cow position:
               chr4:29318090-29317877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               110, 188
               

               Conread position:
               295-504
               

               Cow position:
               chr4:69169631-69169840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               122, 153
               

               Conread position:
               295-508
               

               Cow position:
               chr4:51986593-51986379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               295-523
               

               Cow position:
               chr4:23757748-23757982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               295-525
               

               Cow position:
               chr4:32561815-32562041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               295-537
               

               Cow position:
               chr4:19496480-19496720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               132, 209
               

               Conread position:
               295-537
               

               Cow position:
               chr4:40995717-40995959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               235, 42
               

               Conread position:
               296-496
               

               Cow position:
               chr4:13995374-13995571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               108, 40
               

               Conread position:
               296-504
               

               Cow position:
               chr4:8083812-8083617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               28, 126
               

               Conread position:
               296-524
               

               Cow position:
               chr4:35974345-35974576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               21, 218
               

               Conread position:
               296-529
               

               Cow position:
               chr4:19539250-19539017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               129, 193
               

               Conread position:
               297-529
               

               Cow position:
               chr4:39007495-39007714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               206, 39
               

               Conread position:
               298-493
               

               Cow position:
               chr4:14512569-14512372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               298-499
               

               Cow position:
               chr4:48127554-48127761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               99, 72
               

               Conread position:
               300-507
               

               Cow position:
               chr4:5790637-5790840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               301-500
               

               Cow position:
               chr4:34722895-34722697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               301-500
               

               Cow position:
               chr4:42080710-42080518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               303-516
               

               Cow position:
               chr4:561626-561836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               198, 35
               

               Conread position:
               305-504
               

               Cow position:
               chr4:17790296-17790105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               305-504
               

               Cow position:
               chr4:56410341-56410536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               305-508
               

               Cow position:
               chr4:23059860-23059657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               305-521
               

               Cow position:
               chr4:348429-348224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               305-522
               

               Cow position:
               chr4:56852850-56853060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               134, 21
               

               Conread position:
               305-524
               

               Cow position:
               chr4:63078218-63078438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               198, 0
               

               Conread position:
               305-540
               

               Cow position:
               chr4:45852947-45852721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               198, 44
               

               Conread position:
               306-513
               

               Cow position:
               chr4:53347973-53347781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               307-490
               

               Cow position:
               chr4:27511542-27511725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               307-522
               

               Cow position:
               chr4:9434572-9434793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               42, 19
               

               Conread position:
               307-523
               

               Cow position:
               chr4:30769033-30769240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               307-527
               

               Cow position:
               chr4:42347482-42347701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               308-523
               

               Cow position:
               chr4:61887635-61887851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               24, 30
               

               Conread position:
               311-504
               

               Cow position:
               chr4:13508239-13508048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               52, 112
               

               Conread position:
               311-504
               

               Cow position:
               chr4:30691006-30691193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               312-457
               

               Cow position:
               chr4:21520581-21520726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               312-522
               

               Cow position:
               chr4:47230995-47230788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               162
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               156, 0
               

               Conread position:
               312-522
               

               Cow position:
               chr4:47284010-47283803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               162
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               156, 0
               

               Conread position:
               312-523
               

               Cow position:
               chr4:61999199-61998986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               35, 109
               

               Conread position:
               312-525
               

               Cow position:
               chr4:61995385-61995596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               165, 0
               

               Conread position:
               312-528
               

               Cow position:
               chr4:46656132-46656350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               312-529
               

               Cow position:
               chr4:23807952-23808176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               103, 169
               
UCSC Genome Browser
               Conread position:
               312-529
               

               Cow position:
               chr4:56236549-56236341 (view  custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               107, 0
               
UCSC Genome Browser
               
               
               
Conread position: 312-538

               
               
               
Cow position: chr4:41780236-41780010 (view  custom track)

               
               
               
Alignm length: 232

               
               
               
Alignm identity: 166

               
               
               
Alignm E-value: 3e-30

               
               
               
Alignm gaps (pig, cow): 110, 73
UCSC Genome Browser
               
               
               
Conread position: 313-504

               
               
               
Cow position: chr4:58389238-58389044 (view  custom track)

               
               
               
Alignm length: 202

               
               
               
Alignm identity: 145

               
               
               
Alignm E-value: 1e-21

               
               
               
Alignm gaps (pig, cow): 102, 163

               
               
               Conread position:313-512
               
               
               Cow position:chr4:16091312-16091118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:313-521
               
               
               Cow position:chr4:42044971-42044768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:313-529
               
               
               Cow position:chr4:42374152-42373940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 115

               
               
               Conread position:314-508
               
               
               Cow position:chr4:23799761-23799557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:314-531
               
               
               Cow position:chr4:30172223-30172011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):70, 158

               
               
               Conread position:314-532
               
               
               Cow position:chr4:39010054-39010270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):113, 93

               
               
               Conread position:315-502
               
               
               Cow position:chr4:23985119-23984929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:315-508
               
               
               Cow position:chr4:24810443-24810256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:315-508
               
               
               Cow position:chr4:51083332-51083145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):155, 90

               
               
               Conread position:315-511
               
               
               Cow position:chr4:53380695-53380892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):165, 8

               
               
               Conread position:315-515
               
               
               Cow position:chr4:25802696-25802897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:316-504
               
               
               Cow position:chr4:47048124-47048305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:317-525
               
               
               Cow position:chr4:50494779-50494991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:318-504
               
               
               Cow position:chr4:48031719-48031534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:318-519
               
               
               Cow position:chr4:19200121-19200312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:320-500
               
               
               Cow position:chr4:11154279-11154460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:320-504
               
               
               Cow position:chr4:46668987-46669174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):97, 133

               
               
               Conread position:320-504
               
               
               Cow position:chr4:54937092-54937285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:320-507
               
               
               Cow position:chr4:63261481-63261667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:320-508
               
               
               Cow position:chr4:45963894-45964086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:320-525
               
               
               Cow position:chr4:5250198-5250402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:321-466
               
               
               Cow position:chr4:22051104-22050959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:321-501
               
               
               Cow position:chr4:22215499-22215325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:321-531
               
               
               Cow position:chr4:8087001-8086791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:322-504
               
               
               Cow position:chr4:501669-501479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:324-504
               
               
               Cow position:chr4:62794349-62794165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:325-504
               
               
               Cow position:chr4:60332221-60332036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:326-523
               
               
               Cow position:chr4:27656994-27657181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:326-525
               
               
               Cow position:chr4:58045618-58045419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):194, 20

               
               
               Conread position:327-459
               
               
               Cow position:chr4:65730754-65730622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:327-504
               
               
               Cow position:chr4:2731845-2732023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:327-504
               
               
               Cow position:chr4:19542954-19543134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:327-504
               
               
               Cow position:chr4:29247183-29247009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:327-512
               
               
               Cow position:chr4:8352547-8352362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):175, 84

               
               
               Conread position:327-525
               
               
               Cow position:chr4:41098953-41099144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):90, 135

               
               
               Conread position:327-537
               
               
               Cow position:chr4:50718807-50719013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):116, 29

               
               
               Conread position:327-544
               
               
               Cow position:chr4:36876840-36876629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):126, 41

               
               
               Conread position:328-512
               
               
               Cow position:chr4:45483817-45484002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):97, 77

               
               
               Conread position:329-500
               
               
               Cow position:chr4:22331144-22331307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:329-515
               
               
               Cow position:chr4:4516850-4516667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:330-504
               
               
               Cow position:chr4:34919249-34919083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:331-487
               
               
               Cow position:chr4:68808087-68807931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:331-489
               
               
               Cow position:chr4:39091908-39092060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:331-490
               
               
               Cow position:chr4:30845393-30845562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:331-500
               
               
               Cow position:chr4:16239146-16238982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:331-508
               
               
               Cow position:chr4:21112550-21112377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):172, 34

               
               
               Conread position:331-523
               
               
               Cow position:chr4:45773484-45773676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:331-525
               
               
               Cow position:chr4:20282263-20282451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:331-525
               
               
               Cow position:chr4:40392837-40393020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:331-538
               
               
               Cow position:chr4:37985754-37985954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:332-431
               
               
               Cow position:chr4:28781625-28781526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:332-500
               
               
               Cow position:chr4:48693621-48693782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:332-500
               
               
               Cow position:chr4:66412208-66412370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 78

               
               
               Conread position:332-525
               
               
               Cow position:chr4:26671826-26671631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:332-535
               
               
               Cow position:chr4:30647877-30648069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:332-536
               
               
               Cow position:chr4:47417435-47417637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):184, 145

               
               
               Conread position:333-515
               
               
               Cow position:chr4:8675392-8675568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:334-508
               
               
               Cow position:chr4:23925360-23925180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:334-522
               
               
               Cow position:chr4:20153524-20153346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:336-500
               
               
               Cow position:chr4:50131543-50131709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:336-504
               
               
               Cow position:chr4:30943981-30944145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:336-513
               
               
               Cow position:chr4:50837728-50837905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):161, 76

               
               
               Conread position:336-541
               
               
               Cow position:chr4:23943618-23943414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):117, 90

               
               
               Conread position:336-544
               
               
               Cow position:chr4:23271309-23271513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):202, 106

               
               
               Conread position:337-498
               
               
               Cow position:chr4:48137972-48138130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):157, 8

               
               
               Conread position:337-498
               
               
               Cow position:chr4:60370501-60370341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:337-501
               
               
               Cow position:chr4:2628556-2628718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:337-504
               
               
               Cow position:chr4:19420729-19420564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:337-504
               
               
               Cow position:chr4:59105655-59105494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:337-504
               
               
               Cow position:chr4:61969698-61969539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:337-523
               
               
               Cow position:chr4:56395540-56395726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:337-525
               
               
               Cow position:chr4:4647427-4647612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:337-525
               
               
               Cow position:chr4:43579385-43579199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):147, 84

               
               
               Conread position:337-526
               
               
               Cow position:chr4:45840426-45840603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:338-496
               
               
               Cow position:chr4:36070731-36070885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:338-500
               
               
               Cow position:chr4:28854246-28854089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:338-507
               
               
               Cow position:chr4:33388885-33389056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:338-508
               
               
               Cow position:chr4:46235131-46234967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:338-512
               
               
               Cow position:chr4:38358796-38358628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:338-512
               
               
               Cow position:chr4:56755883-56756057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:338-514
               
               
               Cow position:chr4:2713831-2713655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):173, 73

               
               
               Conread position:338-514
               
               
               Cow position:chr4:57566660-57566492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):164, 89

               
               
               Conread position:338-521
               
               
               Cow position:chr4:68776964-68777150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:338-522
               
               
               Cow position:chr4:12713998-12713822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):167, 88

               
               
               Conread position:338-522
               
               
               Cow position:chr4:12716867-12716693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:338-533
               
               
               Cow position:chr4:56307831-56308023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):97, 135

               
               
               Conread position:338-541
               
               
               Cow position:chr4:28660522-28660316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):81, 91

               
               
               Conread position:339-500
               
               
               Cow position:chr4:38940913-38940755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):68, 98

               
               
               Conread position:339-504
               
               
               Cow position:chr4:51617969-51617805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:339-511
               
               
               Cow position:chr4:61524462-61524628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:339-512
               
               
               Cow position:chr4:53050022-53050194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:339-515
               
               
               Cow position:chr4:36058071-36058249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:339-535
               
               
               Cow position:chr4:45801545-45801741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):158, 70

               
               
               Conread position:341-500
               
               
               Cow position:chr4:14020528-14020686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:342-512
               
               
               Cow position:chr4:45723278-45723448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:343-504
               
               
               Cow position:chr4:48239318-48239157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):66, 130

               
               
               Conread position:343-520
               
               
               Cow position:chr4:61451247-61451424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 164

               
               
               Conread position:343-523
               
               
               Cow position:chr4:16637041-16636866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:344-499
               
               
               Cow position:chr4:27691638-27691484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:345-507
               
               
               Cow position:chr4:17076243-17076083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:345-508
               
               
               Cow position:chr4:14131463-14131619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:345-522
               
               
               Cow position:chr4:2770109-2770281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):157, 76

               
               
               Conread position:345-522
               
               
               Cow position:chr4:49808553-49808727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:346-509
               
               
               Cow position:chr4:42608776-42608935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:346-515
               
               
               Cow position:chr4:12908410-12908571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:346-518
               
               
               Cow position:chr4:63293496-63293664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):155, 46

               
               
               Conread position:347-522
               
               
               Cow position:chr4:59557478-59557649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):156, 65

               
               
               Conread position:352-515
               
               
               Cow position:chr4:44927498-44927339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):148, 52

               
               
               Conread position:353-504
               
               
               Cow position:chr4:19463588-19463739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):72, 47

               
               
               Conread position:353-507
               
               
               Cow position:chr4:60821743-60821898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:353-515
               
               
               Cow position:chr4:53941753-53941591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:353-522
               
               
               Cow position:chr4:66354914-66354743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:356-492
               
               
               Cow position:chr4:60072698-60072573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:356-504
               
               
               Cow position:chr4:10786093-10785949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:356-508
               
               
               Cow position:chr4:7816339-7816496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:356-508
               
               
               Cow position:chr4:54315179-54315026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:356-519
               
               
               Cow position:chr4:51026397-51026558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):145, 55

               
               
               Conread position:356-521
               
               
               Cow position:chr4:63198325-63198155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:356-525
               
               
               Cow position:chr4:19503975-19504132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:356-528
               
               
               Cow position:chr4:19496939-19496764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:357-504
               
               
               Cow position:chr4:42277942-42277794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:357-504
               
               
               Cow position:chr4:68358378-68358517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:359-512
               
               
               Cow position:chr4:12245259-12245411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):144, 61

               
               
               Conread position:360-541
               
               
               Cow position:chr4:22127956-22127783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):146, 61

               
               
               Conread position:361-512
               
               
               Cow position:chr4:29116727-29116572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:362-529
               
               
               Cow position:chr4:34722420-34722588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:363-533
               
               
               Cow position:chr4:60761691-60761860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:364-520
               
               
               Cow position:chr4:34544361-34544512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:364-532
               
               
               Cow position:chr4:20470932-20471095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:364-537
               
               
               Cow position:chr4:8389027-8388852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 53

               
               
               Conread position:367-508
               
               
               Cow position:chr4:9571162-9571303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):133, 38

               
               
               Conread position:373-524
               
               
               Cow position:chr4:12604711-12604857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:374-525
               
               
               Cow position:chr4:26183196-26183350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):128, 120

               
               
               Conread position:375-512
               
               
               Cow position:chr4:45742023-45741886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 101

               
               
               Conread position:377-512
               
               
               Cow position:chr4:43436330-43436466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:377-544
               
               
               Cow position:chr4:45629979-45629816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:378-531
               
               
               Cow position:chr4:22701741-22701593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):94, 49

               
               
               Conread position:379-525
               
               
               Cow position:chr4:43710088-43709942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):136, 13

               
               
               Conread position:381-504
               
               
               Cow position:chr4:6202332-6202212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):120, 40

               
               
               Conread position:411-522
               
               
               Cow position:chr4:64336180-64336069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.
Conread position:	1-426
Cow position:	chr4:2141426-2141851 (view UCSC Genome Browser custom track)
Alignm length:	440
Alignm identity:	294
Alignm E-value:	8e-39
Alignm gaps (pig, cow):	10, 191
Conread position:	2-449
Cow position:	chr4:21392113-21391677 (view UCSC Genome Browser custom track)
Alignm length:	460
Alignm identity:	333
Alignm E-value:	0
Alignm gaps (pig, cow):	143, 12
Conread position:	2-504
Cow position:	chr4:12591527-12591029 (view UCSC Genome Browser custom track)
Alignm length:	514
Alignm identity:	374
Alignm E-value:	0
Alignm gaps (pig, cow):	75, 144
Conread position:	2-512
Cow position:	chr4:60897589-60897095 (view UCSC Genome Browser custom track)
Alignm length:	522
Alignm identity:	358
Alignm E-value:	0
Alignm gaps (pig, cow):	74, 143
Conread position:	2-515
Cow position:	chr4:65919306-65919819 (view UCSC Genome Browser custom track)
Alignm length:	527
Alignm identity:	364
Alignm E-value:	0
Alignm gaps (pig, cow):	201, 44
Conread position:	2-519
Cow position:	chr4:25226614-25227142 (view UCSC Genome Browser custom track)
Alignm length:	550
Alignm identity:	359
Alignm E-value:	4e-34
Alignm gaps (pig, cow):	31, 54
Conread position:	2-522
Cow position:	chr4:17833221-17832685 (view UCSC Genome Browser custom track)
Alignm length:	539
Alignm identity:	376
Alignm E-value:	0
Alignm gaps (pig, cow):	142, 409
Conread position:	3-142
Cow position:	chr4:48212788-48212651 (view UCSC Genome Browser custom track)
Alignm length:	141
Alignm identity:	106
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	77, 33
Conread position:	3-166
Cow position:	chr4:48409874-48409707 (view UCSC Genome Browser custom track)
Alignm length:	169
Alignm identity:	131
Alignm E-value:	3e-30
Alignm gaps (pig, cow):	66, 138
Conread position:	3-186
Cow position:	chr4:26009131-26009324 (view UCSC Genome Browser custom track)
Alignm length:	194
Alignm identity:	141
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	77, 0
Conread position:	3-198
Cow position:	chr4:10993859-10993667 (view UCSC Genome Browser custom track)
Alignm length:	199
Alignm identity:	141
Alignm E-value:	5e-24
Alignm gaps (pig, cow):	141, 48
Conread position:	3-220
Cow position:	chr4:26549141-26549365 (view UCSC Genome Browser custom track)
Alignm length:	227
Alignm identity:	161
Alignm E-value:	6e-26
Alignm gaps (pig, cow):	34, 148
Conread position:	3-258
Cow position:	chr4:42232353-42232608 (view UCSC Genome Browser custom track)
Alignm length:	264
Alignm identity:	190
Alignm E-value:	2e-35
Alignm gaps (pig, cow):	117, 72
Conread position:	3-263
Cow position:	chr4:29813848-29813590 (view UCSC Genome Browser custom track)
Alignm length:	267
Alignm identity:	198
Alignm E-value:	8e-40
Alignm gaps (pig, cow):	51, 108
Conread position:	3-269
Cow position:	chr4:11090995-11090738 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	197
Alignm E-value:	3.00018e-42
Alignm gaps (pig, cow):	200, 32
Conread position:	3-272
Cow position:	chr4:43543049-43542772 (view UCSC Genome Browser custom track)
Alignm length:	284
Alignm identity:	205
Alignm E-value:	2e-36
Alignm gaps (pig, cow):	15, 11
Conread position:	3-276
Cow position:	chr4:14159439-14159158 (view UCSC Genome Browser custom track)
Alignm length:	283
Alignm identity:	189
Alignm E-value:	7e-28
Alignm gaps (pig, cow):	74, 143
Conread position:	3-282
Cow position:	chr4:24119226-24118934 (view UCSC Genome Browser custom track)
Alignm length:	295
Alignm identity:	213
Alignm E-value:	3e-40
Alignm gaps (pig, cow):	65, 258
Conread position:	3-284
Cow position:	chr4:13271833-13272118 (view UCSC Genome Browser custom track)
Alignm length:	291
Alignm identity:	195
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	77, 192
Conread position:	3-285
Cow position:	chr4:54501764-54501472 (view UCSC Genome Browser custom track)
Alignm length:	294
Alignm identity:	204
Alignm E-value:	2e-35
Alignm gaps (pig, cow):	78, 187