Cow genome map
| Conread name: | Pig1-47E13 |
| Conread position: | 1-125 |
| Cow position: | chr29:39567654-39567780 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1-129 |
| Cow position: | chr29:4085282-4085411 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-130 |
| Cow position: | chr29:2263023-2262892 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-130 |
| Cow position: | chr29:5995125-5994993 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 125 |
| Conread position: | 1-130 |
| Cow position: | chr29:8004953-8004824 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 1-130 |
| Cow position: | chr29:13028413-13028543 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-130 |
| Cow position: | chr29:13639397-13639263 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 1-130 |
| Cow position: | chr29:13867241-13867107 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-130 |
| Cow position: | chr29:24188096-24187962 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-130 |
| Cow position: | chr29:40096935-40097065 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 1-130 |
| Cow position: | chr29:40583760-40583888 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 62 |
| Conread position: | 1-131 |
| Cow position: | chr29:1325412-1325543 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-131 |
| Cow position: | chr29:31928958-31929091 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-131 |
| Cow position: | chr29:36217084-36217216 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-141 |
| Cow position: | chr29:4520308-4520450 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1-169 |
| Cow position: | chr29:31981800-31981982 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-170 |
| Cow position: | chr29:17154748-17154923 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-171 |
| Cow position: | chr29:21509821-21509993 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 1-173 |
| Cow position: | chr29:12626007-12625834 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 136 |
| Conread position: | 1-173 |
| Cow position: | chr29:12680125-12680301 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 155 |
| Conread position: | 1-173 |
| Cow position: | chr29:36357098-36357271 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 142 |
| Conread position: | 1-173 |
| Cow position: | chr29:41530820-41530994 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 1-194 |
| Cow position: | chr29:109664-109864 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 116, 47 |
| Conread position: | 1-198 |
| Cow position: | chr29:7310645-7310861 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 2-130 |
| Cow position: | chr29:29057149-29057278 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 2-130 |
| Cow position: | chr29:38580950-38581082 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 2-131 |
| Cow position: | chr29:21645289-21645413 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 2-135 |
| Cow position: | chr29:5210462-5210598 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 58, 134 |
| Conread position: | 2-170 |
| Cow position: | chr29:5788999-5789176 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 2-199 |
| Cow position: | chr29:28195545-28195334 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 2-225 |
| Cow position: | chr29:35501684-35501440 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 242 |
| Conread position: | 3-214 |
| Cow position: | chr29:11434090-11434311 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 154 |
| Conread position: | 5-123 |
| Cow position: | chr29:19559046-19558923 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 5-125 |
| Cow position: | chr29:6293505-6293381 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 104 |
| Conread position: | 5-130 |
| Cow position: | chr29:11647068-11647197 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 5-130 |
| Cow position: | chr29:28775486-28775360 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 5-131 |
| Cow position: | chr29:19949282-19949411 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 5-194 |
| Cow position: | chr29:22162276-22162070 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 5-198 |
| Cow position: | chr29:11053886-11053696 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 55, 129 |
| Conread position: | 5-198 |
| Cow position: | chr29:16278961-16279175 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 110 |
| Conread position: | 5-213 |
| Cow position: | chr29:16309716-16309933 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 100 |
| Conread position: | 6-120 |
| Cow position: | chr29:26319143-26319259 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 6-194 |
| Cow position: | chr29:31651385-31651596 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 9-130 |
| Cow position: | chr29:396390-396509 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 9-130 |
| Cow position: | chr29:12783983-12783861 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 85 |
| Conread position: | 9-130 |
| Cow position: | chr29:26416332-26416454 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 9-130 |
| Cow position: | chr29:27858772-27858890 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 9-130 |
| Cow position: | chr29:31934356-31934482 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 9-130 |
| Cow position: | chr29:40299043-40298917 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 9-170 |
| Cow position: | chr29:4423462-4423289 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 9-170 |
| Cow position: | chr29:8686307-8686470 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 51, 129 |
| Conread position: | 9-195 |
| Cow position: | chr29:18203408-18203222 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 9-201 |
| Cow position: | chr29:706972-706774 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 118, 52 |
| Conread position: | 11-131 |
| Cow position: | chr29:40791289-40791407 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 11-140 |
| Cow position: | chr29:19821263-19821397 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 11-140 |
| Cow position: | chr29:30918528-30918662 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 11-170 |
| Cow position: | chr29:37960995-37960836 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 53, 124 |
| Conread position: | 11-198 |
| Cow position: | chr29:28166240-28166062 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 11, 121 |
| Conread position: | 11-198 |
| Cow position: | chr29:28979519-28979318 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 13-129 |
| Cow position: | chr29:34517502-34517389 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 13-130 |
| Cow position: | chr29:34760432-34760314 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 13-131 |
| Cow position: | chr29:11527808-11527688 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 23-214 |
| Cow position: | chr29:32963540-32963736 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 109, 34 |
| Conread position: | 26-130 |
| Cow position: | chr29:19244465-19244356 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 27-132 |
| Cow position: | chr29:18579839-18579734 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 30-130 |
| Cow position: | chr29:629536-629641 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 32-130 |
| Cow position: | chr29:40615493-40615394 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 34-211 |
| Cow position: | chr29:5064784-5064976 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 27 |
| Conread position: | 51-216 |
| Cow position: | chr29:9622668-9622492 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 73-207 |
| Cow position: | chr29:16771633-16771770 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.