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Cow genome map

           
Conread name:
           
Pig1-57C11
        

               
Conread position:
               
1-237
               

               
Cow position:
               
chr5:2430552-2430799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
27, 160
               

               
Conread position:
               
2-185
               

               
Cow position:
               
chr5:35299642-35299456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 158
               

               
Conread position:
               
2-196
               

               
Cow position:
               
chr5:41551346-41551539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr5:7273444-7273201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
109, 158
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr5:6158618-6158860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr5:37731924-37731678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
26, 159
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr5:46663580-46663338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr5:52804913-52804688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
25, 161
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr5:59282341-59282095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
26, 159
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr5:10443624-10443873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
58, 29
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr5:42504334-42504093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 95
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr5:3785390-3785136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
28, 159
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr5:49119699-49119951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
26, 167
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr5:49181860-49181632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr5:2530849-2530597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
27, 75
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr5:10776674-10776923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr5:10844296-10844552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
26, 155
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr5:14379741-14379489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr5:24576491-24576235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr5:46775664-46775413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr5:48468698-48468951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
112, 25
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr5:12681930-12682178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
109, 59
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr5:34202527-34202286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr5:41529990-41530248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 159
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr5:61273589-61273844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr5:55627583-55627303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
26, 159
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr5:57482968-57483241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
26, 159
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr5:32945459-32945141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
26, 126
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr5:48809134-48809451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
33, 155
               

               
Conread position:
               
2-315
               

               
Cow position:
               
chr5:4068569-4068241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
26, 159
               

               
Conread position:
               
3-160
               

               
Cow position:
               
chr5:45699858-45699698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
23, 142
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr5:32733667-32733830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr5:18665539-18665354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 157
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr5:29008937-29008743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr5:24098226-24097998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr5:46739007-46739230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
25, 155
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr5:4384807-4384586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
25, 126
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr5:58747462-58747248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
111, 6
               

               
Conread position:
               
3-228
               

               
Cow position:
               
chr5:64782439-64782671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 158
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr5:416142-416387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr5:10918375-10918137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 158
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr5:24329877-24329647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
23, 163
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr5:28031063-28030847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 25
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr5:30578900-30578658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
25, 163
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr5:54793040-54793285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 158
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr5:3964048-3963800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr5:18663825-18663568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 157
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr5:23960530-23960787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
25, 165
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr5:26079641-26079897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
25, 167
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr5:27909690-27909947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
25, 165
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr5:37755561-37755818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
25, 165
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr5:53714834-53714577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
25, 165
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr5:59060202-59059939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 170
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr5:59144359-59144100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr5:59481832-59481572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr5:49593881-49594138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 87
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr5:28006797-28006527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
3-307
               

               
Cow position:
               
chr5:1342218-1342536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 158
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr5:41963355-41963577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
22, 125
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr5:46644286-46644035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
24, 157
               

               
Conread position:
               
8-173
               

               
Cow position:
               
chr5:12185233-12185064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
8-224
               

               
Cow position:
               
chr5:6519464-6519250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
8-233
               

               
Cow position:
               
chr5:27000770-27000550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
9-225
               

               
Cow position:
               
chr5:76123979-76124200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
10-233
               

               
Cow position:
               
chr5:23687899-23688134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
16, 152
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chr5:3504676-3504909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
18, 59
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr5:31706145-31705906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
10-248
               

               
Cow position:
               
chr5:58195573-58195324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 88
               

               
Conread position:
               
10-249
               

               
Cow position:
               
chr5:4019628-4019877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 145
               

               
Conread position:
               
10-249
               

               
Cow position:
               
chr5:32772052-32771803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
18, 141
               

               
Conread position:
               
10-249
               

               
Cow position:
               
chr5:45182531-45182771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
18, 54
               

               
Conread position:
               
11-237
               

               
Cow position:
               
chr5:34696153-34695919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
99, 149
               

               
Conread position:
               
11-256
               

               
Cow position:
               
chr5:26769383-26769147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
12-237
               

               
Cow position:
               
chr5:2914019-2913784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
16, 148
               

               
Conread position:
               
13-256
               

               
Cow position:
               
chr5:23716377-23716628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 148
               

               
Conread position:
               
25-219
               

               
Cow position:
               
chr5:58061269-58061468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
27-237
               

               
Cow position:
               
chr5:73489773-73489993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
84, 133
               

               
Conread position:
               
32-227
               

               
Cow position:
               
chr5:29437411-29437613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
36-221
               

               
Cow position:
               
chr5:46005886-46006082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 125
               

               
Conread position:
               
39-249
               

               
Cow position:
               
chr5:47831553-47831772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
40-249
               

               
Cow position:
               
chr5:32674188-32674403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 127
               

               
Conread position:
               
50-249
               

               
Cow position:
               
chr5:27060545-27060746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 92
               

               
Conread position:
               
81-255
               

               
Cow position:
               
chr5:29457121-29456948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
210-534
               

               
Cow position:
               
chr5:44028025-44028346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
217-460
               

               
Cow position:
               
chr5:3817411-3817654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
36, 27
               

               
Conread position:
               
229-532
               

               
Cow position:
               
chr5:47757037-47756736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
232-532
               

               
Cow position:
               
chr5:57101268-57101565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
208, 11
               

               
Conread position:
               
237-460
               

               
Cow position:
               
chr5:12562507-12562727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
184, 9
               

               
Conread position:
               
242-458
               

               
Cow position:
               
chr5:34288003-34288215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
247-532
               

               
Cow position:
               
chr5:35246858-35247151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
9, 238
               

               
Conread position:
               
248-478
               

               
Cow position:
               
chr5:2240745-2240976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
248-494
               

               
Cow position:
               
chr5:46512521-46512771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
249-506
               

               
Cow position:
               
chr5:17105085-17104839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
215, 14
               

               
Conread position:
               
250-407
               

               
Cow position:
               
chr5:74050063-74049910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
250-455
               

               
Cow position:
               
chr5:35394195-35394395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
250-494
               

               
Cow position:
               
chr5:69383498-69383251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 107
               

               
Conread position:
               
250-534
               

               
Cow position:
               
chr5:69338052-69337782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
210, 15
               

               
Conread position:
               
251-442
               

               
Cow position:
               
chr5:60207945-60207759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
251-496
               

               
Cow position:
               
chr5:70749944-70750190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 129
               

               
Conread position:
               
251-522
               

               
Cow position:
               
chr5:50101135-50101407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
251-532
               

               
Cow position:
               
chr5:24995979-24996262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
96, 70
               

               
Conread position:
               
251-532
               

               
Cow position:
               
chr5:44446634-44446907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
209, 20
               

               
Conread position:
               
251-532
               

               
Cow position:
               
chr5:45845449-45845733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
140, 20
               

               
Conread position:
               
251-532
               

               
Cow position:
               
chr5:56014964-56014690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
208, 86
               

               
Conread position:
               
251-532
               

               
Cow position:
               
chr5:59626728-59627013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
251-532
               

               
Cow position:
               
chr5:65753102-65752818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
251-534
               

               
Cow position:
               
chr5:55966630-55966920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
252-419
               

               
Cow position:
               
chr5:52849321-52849159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
252-443
               

               
Cow position:
               
chr5:66287181-66286994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
182, 19
               

               
Conread position:
               
252-458
               

               
Cow position:
               
chr5:51289361-51289556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
252-503
               

               
Cow position:
               
chr5:12902159-12901911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 13
               

               
Conread position:
               
252-511
               

               
Cow position:
               
chr5:12434773-12434522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
208, 11
               

               
Conread position:
               
252-527
               

               
Cow position:
               
chr5:33560499-33560767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
252-528
               

               
Cow position:
               
chr5:49474316-49474583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
207, 11
               

               
Conread position:
               
252-534
               

               
Cow position:
               
chr5:30253981-30253700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
208, 79
               

               
Conread position:
               
253-458
               

               
Cow position:
               
chr5:15991406-15991604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
253-474
               

               
Cow position:
               
chr5:26147827-26147608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
118, 13
               

               
Conread position:
               
253-527
               

               
Cow position:
               
chr5:30303121-30302859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
206, 97
               

               
Conread position:
               
253-528
               

               
Cow position:
               
chr5:11667944-11668219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
80, 241
               

               
Conread position:
               
253-530
               

               
Cow position:
               
chr5:22667310-22667040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 99
               

               
Conread position:
               
253-531
               

               
Cow position:
               
chr5:57074098-57074372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 18
               

               
Conread position:
               
254-467
               

               
Cow position:
               
chr5:35190342-35190134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
206, 9
               

               
Conread position:
               
254-528
               

               
Cow position:
               
chr5:30845342-30845076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
146, 19
               

               
Conread position:
               
254-532
               

               
Cow position:
               
chr5:7057158-7057439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
112, 139
               

               
Conread position:
               
254-534
               

               
Cow position:
               
chr5:34562249-34561971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
255-409
               

               
Cow position:
               
chr5:48104498-48104345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
132, 97
               

               
Conread position:
               
255-435
               

               
Cow position:
               
chr5:21721240-21721412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
255-534
               

               
Cow position:
               
chr5:43403146-43402859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
257-534
               

               
Cow position:
               
chr5:7044471-7044748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
203, 14
               

               
Conread position:
               
257-534
               

               
Cow position:
               
chr5:74643450-74643712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
259-529
               

               
Cow position:
               
chr5:12673246-12673504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
260-503
               

               
Cow position:
               
chr5:39036017-39035769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 128
               

               
Conread position:
               
260-516
               

               
Cow position:
               
chr5:14920691-14920955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
10, 226
               

               
Conread position:
               
261-415
               

               
Cow position:
               
chr5:6245433-6245585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
261-509
               

               
Cow position:
               
chr5:29681326-29681082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
261-511
               

               
Cow position:
               
chr5:66339305-66339059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
47, 71
               

               
Conread position:
               
261-513
               

               
Cow position:
               
chr5:19752533-19752285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
130, 73
               

               
Conread position:
               
261-534
               

               
Cow position:
               
chr5:72895918-72895644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
199, 224
               

               
Conread position:
               
262-423
               

               
Cow position:
               
chr5:47960032-47960191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 91
               

               
Conread position:
               
262-426
               

               
Cow position:
               
chr5:9559646-9559488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
262-441
               

               
Cow position:
               
chr5:37253654-37253481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
262-442
               

               
Cow position:
               
chr5:67340111-67339934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
262-497
               

               
Cow position:
               
chr5:50824814-50824586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
198, 80
               

               
Conread position:
               
262-500
               

               
Cow position:
               
chr5:46540828-46541065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
262-515
               

               
Cow position:
               
chr5:45186884-45187142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 132
               

               
Conread position:
               
262-522
               

               
Cow position:
               
chr5:61914802-61914541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
101, 128
               

               
Conread position:
               
262-526
               

               
Cow position:
               
chr5:26548912-26549175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
197, 97
               

               
Conread position:
               
262-530
               

               
Cow position:
               
chr5:55232592-55232842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
30, 38
               

               
Conread position:
               
262-531
               

               
Cow position:
               
chr5:56071088-56070818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 15
               

               
Conread position:
               
262-532
               

               
Cow position:
               
chr5:61726188-61725927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
176, 82
               

               
Conread position:
               
262-534
               

               
Cow position:
               
chr5:20288029-20288305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 10
               

               
Conread position:
               
264-496
               

               
Cow position:
               
chr5:56028316-56028545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
217, 78
               

               
Conread position:
               
264-532
               

               
Cow position:
               
chr5:41165312-41165047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
265-480
               

               
Cow position:
               
chr5:60514797-60515017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 121
               

               
Conread position:
               
265-505
               

               
Cow position:
               
chr5:56059836-56060087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
45, 123
               

               
Conread position:
               
266-416
               

               
Cow position:
               
chr5:34639351-34639199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
266-432
               

               
Cow position:
               
chr5:34787799-34787635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
266-461
               

               
Cow position:
               
chr5:29895398-29895203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
266-473
               

               
Cow position:
               
chr5:54312826-54312619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
193, 15
               

               
Conread position:
               
266-474
               

               
Cow position:
               
chr5:26167646-26167439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
194, 14
               

               
Conread position:
               
266-484
               

               
Cow position:
               
chr5:51298488-51298705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
195, 75
               

               
Conread position:
               
266-516
               

               
Cow position:
               
chr5:6438799-6439059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
177, 11
               

               
Conread position:
               
266-522
               

               
Cow position:
               
chr5:42050771-42050521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
194, 46
               

               
Conread position:
               
266-528
               

               
Cow position:
               
chr5:9893898-9894161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
194, 43
               

               
Conread position:
               
266-531
               

               
Cow position:
               
chr5:26467854-26467585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
152, 28
               

               
Conread position:
               
266-532
               

               
Cow position:
               
chr5:21617682-21617418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 88
               

               
Conread position:
               
266-532
               

               
Cow position:
               
chr5:31052615-31052346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
123, 53
               

               
Conread position:
               
266-532
               

               
Cow position:
               
chr5:52164946-52165217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
67, 122
               

               
Conread position:
               
266-532
               

               
Cow position:
               
chr5:64321989-64321715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
266-534
               

               
Cow position:
               
chr5:65941023-65941293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
266-534
               

               
Cow position:
               
chr5:70271094-70270818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 87
               

               
Conread position:
               
266-534
               

               
Cow position:
               
chr5:70951665-70951917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
267-457
               

               
Cow position:
               
chr5:57497200-57497388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
267-518
               

               
Cow position:
               
chr5:8736051-8736315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
102, 153
               

               
Conread position:
               
267-532
               

               
Cow position:
               
chr5:25495125-25495388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
268-527
               

               
Cow position:
               
chr5:30233135-30232871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
73, 97
               

               
Conread position:
               
268-527
               

               
Cow position:
               
chr5:73253630-73253381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
191, 84
               

               
Conread position:
               
268-532
               

               
Cow position:
               
chr5:11229446-11229708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
78, 43
               

               
Conread position:
               
268-532
               

               
Cow position:
               
chr5:21829089-21828827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
192, 30
               

               
Conread position:
               
268-532
               

               
Cow position:
               
chr5:69099944-69099679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 92
               

               
Conread position:
               
268-534
               

               
Cow position:
               
chr5:60016389-60016126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
193, 82
               

               
Conread position:
               
269-499
               

               
Cow position:
               
chr5:17767931-17768159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
169, 9
               

               
Conread position:
               
269-532
               

               
Cow position:
               
chr5:40109708-40109452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
191, 65
               

               
Conread position:
               
270-436
               

               
Cow position:
               
chr5:19626799-19626635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
271-472
               

               
Cow position:
               
chr5:74039784-74039984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
189, 53
               

               
Conread position:
               
275-530
               

               
Cow position:
               
chr5:66466531-66466281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
185, 25
               

               
Conread position:
               
278-534
               

               
Cow position:
               
chr5:17554820-17555075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
160, 62
               

               
Conread position:
               
279-519
               

               
Cow position:
               
chr5:49501604-49501851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
55, 109
               

               
Conread position:
               
279-532
               

               
Cow position:
               
chr5:66551678-66551938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 64
               

               
Conread position:
               
279-534
               

               
Cow position:
               
chr5:45397779-45397531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
280-478
               

               
Cow position:
               
chr5:12351599-12351794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 73
               

               
Conread position:
               
280-532
               

               
Cow position:
               
chr5:35826811-35826564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
287-479
               

               
Cow position:
               
chr5:46704094-46704287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
173, 67
               

               
Conread position:
               
289-534
               

               
Cow position:
               
chr5:66366713-66366466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
87, 66
               

               
Conread position:
               
297-480
               

               
Cow position:
               
chr5:38169089-38168905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
87, 57
               

               
Conread position:
               
298-532
               

               
Cow position:
               
chr5:23168632-23168868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
309-532
               

               
Cow position:
               
chr5:60183984-60183762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
134, 32
               

               
Conread position:
               
309-532
               

               
Cow position:
               
chr5:66531099-66530878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
151, 52
               

               
Conread position:
               
326-532
               

               
Cow position:
               
chr5:35982569-35982780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
355-534
               

               
Cow position:
               
chr5:67118559-67118377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
359-532
               

               
Cow position:
               
chr5:50821917-50821743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
101, 136
               
Show alignments to all cow chromosomes.