Cow genome map
| Conread name: | Pig1-58H01 |
| Conread position: | 1-397 |
| Cow position: | chr14:3127734-3127338 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 193, 181 |
| Conread position: | 2-299 |
| Cow position: | chr14:3156187-3156484 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 2-396 |
| Cow position: | chr14:25784053-25784447 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 182, 173 |
| Conread position: | 2-398 |
| Cow position: | chr14:25784221-25784617 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 177, 206 |
| Conread position: | 2-399 |
| Cow position: | chr14:25783465-25783862 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 177, 206 |
| Conread position: | 10-398 |
| Cow position: | chr14:25859649-25860037 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 177, 165 |
| Conread position: | 10-400 |
| Cow position: | chr14:3080129-3079739 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-420 |
| Cow position: | chr14:3080717-3080308 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 186, 172 |
| Conread position: | 11-339 |
| Cow position: | chr14:680437-680766 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 204, 211 |
| Conread position: | 11-397 |
| Cow position: | chr14:3080296-3079910 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 94, 81 |
| Conread position: | 11-400 |
| Cow position: | chr14:3101205-3100822 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 11 |
| Conread position: | 11-401 |
| Cow position: | chr14:3080212-3079822 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 184, 198 |
| Conread position: | 12-339 |
| Cow position: | chr14:3080043-3079715 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 148, 141 |
| Conread position: | 12-398 |
| Cow position: | chr14:3128059-3127673 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 152, 141 |
| Conread position: | 12-401 |
| Cow position: | chr14:447720-448109 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 102, 88 |
| Conread position: | 19-397 |
| Cow position: | chr14:3127884-3127506 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 248 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 20-334 |
| Cow position: | chr14:680950-681264 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 20-380 |
| Cow position: | chr14:3156121-3156481 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 170, 151 |
| Conread position: | 20-385 |
| Cow position: | chr14:3080371-3080006 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 86, 72 |
| Conread position: | 20-394 |
| Cow position: | chr14:25794623-25794248 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 20-397 |
| Cow position: | chr14:3080791-3080414 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 294, 299 |
| Conread position: | 20-400 |
| Cow position: | chr14:25784155-25784535 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 76, 95 |
| Conread position: | 20-401 |
| Cow position: | chr14:3080623-3080242 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 80 |
| Conread position: | 20-401 |
| Cow position: | chr14:3127967-3127586 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 87, 72 |
| Conread position: | 21-393 |
| Cow position: | chr14:3155465-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-394 |
| Cow position: | chr14:25860080-25860453 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 169, 158 |
| Conread position: | 21-398 |
| Cow position: | chr14:25836103-25836480 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 173, 144 |
| Conread position: | 21-400 |
| Cow position: | chr14:25795210-25794831 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 71 |
| Conread position: | 21-401 |
| Cow position: | chr14:3080958-3080578 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 21-411 |
| Cow position: | chr14:680783-681173 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 161, 169 |
| Conread position: | 26-400 |
| Cow position: | chr14:25783741-25784115 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 79 |
| Conread position: | 27-400 |
| Cow position: | chr14:447567-447940 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 290, 276 |
| Conread position: | 27-401 |
| Cow position: | chr14:3080532-3080158 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-401 |
| Cow position: | chr14:3128128-3127754 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-398 |
| Cow position: | chr14:25783407-25783777 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 28-400 |
| Cow position: | chr14:25783995-25784367 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 68, 78 |
| Conread position: | 28-400 |
| Cow position: | chr14:25794699-25794326 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 151, 162 |
| Conread position: | 29-397 |
| Cow position: | chr14:25876971-25877339 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 83 |
| Conread position: | 29-398 |
| Cow position: | chr14:25783912-25784281 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 150, 179 |
| Conread position: | 29-400 |
| Cow position: | chr14:25783324-25783695 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 77, 63 |
| Conread position: | 30-397 |
| Cow position: | chr14:25876804-25877171 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 172, 151 |
| Conread position: | 30-397 |
| Cow position: | chr14:25877392-25877759 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 62 |
| Conread position: | 30-397 |
| Cow position: | chr14:25895935-25896302 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 62 |
| Conread position: | 30-397 |
| Cow position: | chr14:25896019-25896386 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-398 |
| Cow position: | chr14:3100938-3100572 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 175, 40 |
| Conread position: | 30-398 |
| Cow position: | chr14:25836364-25836732 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 165, 149 |
| Conread position: | 30-398 |
| Cow position: | chr14:25836784-25837152 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 30-398 |
| Cow position: | chr14:25859921-25860289 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 30-399 |
| Cow position: | chr14:3156047-3156416 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 76 |
| Conread position: | 30-401 |
| Cow position: | chr14:25860173-25860544 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 30-401 |
| Cow position: | chr14:25877224-25877595 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 30-407 |
| Cow position: | chr14:680876-681253 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 168, 153 |
| Conread position: | 42-339 |
| Cow position: | chr14:3127609-3127311 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 169, 161 |
| Conread position: | 42-388 |
| Cow position: | chr14:25836880-25837226 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 77 |
| Conread position: | 42-397 |
| Cow position: | chr14:25860269-25860624 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 42-397 |
| Cow position: | chr14:25877152-25877507 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 148, 137 |
| Conread position: | 42-397 |
| Cow position: | chr14:25877320-25877675 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 126, 130 |
| Conread position: | 42-401 |
| Cow position: | chr14:3155975-3156334 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 50 |
| Conread position: | 54-339 |
| Cow position: | chr14:680312-680598 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 140, 118 |
| Conread position: | 54-397 |
| Cow position: | chr14:3100748-3100405 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 93, 97 |
| Conread position: | 56-397 |
| Cow position: | chr14:3100996-3100657 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 155, 100 |
| Conread position: | 56-401 |
| Cow position: | chr14:3101412-3101068 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 76, 86 |
| Conread position: | 56-401 |
| Cow position: | chr14:3127763-3127418 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 57-339 |
| Cow position: | chr14:447933-448216 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 136, 119 |
| Conread position: | 57-343 |
| Cow position: | chr14:3155417-3155703 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 64-401 |
| Cow position: | chr14:3155913-3156250 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 96, 89 |
| Conread position: | 72-396 |
| Cow position: | chr14:420584-420906 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 72-397 |
| Cow position: | chr14:25836574-25836899 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 93 |
| Conread position: | 72-401 |
| Cow position: | chr14:680246-680575 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 75-397 |
| Cow position: | chr14:3128164-3127842 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-399 |
| Cow position: | chr14:25859582-25859870 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 55 |
| Conread position: | 111-399 |
| Cow position: | chr14:25876633-25876921 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 61 |
| Conread position: | 114-344 |
| Cow position: | chr14:25860425-25860655 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 73, 64 |
| Conread position: | 114-390 |
| Cow position: | chr14:25910896-25911174 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 56 |
| Conread position: | 114-394 |
| Cow position: | chr14:25859333-25859613 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 68 |
| Conread position: | 124-401 |
| Cow position: | chr14:25836542-25836819 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.