Cow genome map
| Conread name: | Pig1-58H01 |
| Conread position: | 2-394 |
| Cow position: | chr19:23597319-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 191, 169 |
| Conread position: | 3-407 |
| Cow position: | chr19:23614647-23615051 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 104, 99 |
| Conread position: | 10-393 |
| Cow position: | chr19:14959196-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 78 |
| Conread position: | 11-401 |
| Cow position: | chr19:23649685-23650075 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 323, 331 |
| Conread position: | 12-401 |
| Cow position: | chr19:14940456-14940845 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 73, 94 |
| Conread position: | 18-397 |
| Cow position: | chr19:14940294-14940673 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 72 |
| Conread position: | 18-397 |
| Cow position: | chr19:23597251-23597630 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 76, 88 |
| Conread position: | 19-398 |
| Cow position: | chr19:23649441-23649820 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 171, 151 |
| Conread position: | 19-399 |
| Cow position: | chr19:20635578-20635198 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 158, 171 |
| Conread position: | 19-400 |
| Cow position: | chr19:20677670-20678051 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 171, 152 |
| Conread position: | 19-400 |
| Cow position: | chr19:20678090-20678471 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 99, 73 |
| Conread position: | 19-400 |
| Cow position: | chr19:20678258-20678639 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-406 |
| Cow position: | chr19:43570169-43569782 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 99, 75 |
| Conread position: | 20-334 |
| Cow position: | chr19:14948327-14948013 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 170, 160 |
| Conread position: | 20-397 |
| Cow position: | chr19:23614496-23614873 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 86, 75 |
| Conread position: | 20-397 |
| Cow position: | chr19:23649526-23649903 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 168, 151 |
| Conread position: | 20-398 |
| Cow position: | chr19:14960335-14959959 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 86, 76 |
| Conread position: | 20-398 |
| Cow position: | chr19:23614160-23614538 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 178, 151 |
| Conread position: | 20-407 |
| Cow position: | chr19:23613656-23614043 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 70 |
| Conread position: | 21-396 |
| Cow position: | chr19:14960250-14959876 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 369, 92 |
| Conread position: | 21-397 |
| Cow position: | chr19:23613405-23613781 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 71, 84 |
| Conread position: | 21-398 |
| Cow position: | chr19:23613489-23613866 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 70 |
| Conread position: | 21-398 |
| Cow position: | chr19:23614245-23614622 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 86, 70 |
| Conread position: | 21-398 |
| Cow position: | chr19:23649947-23650324 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 137, 132 |
| Conread position: | 21-400 |
| Cow position: | chr19:14940213-14940592 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 86, 79 |
| Conread position: | 21-401 |
| Cow position: | chr19:14940381-14940761 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-396 |
| Cow position: | chr19:14948406-14948035 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 165, 153 |
| Conread position: | 26-383 |
| Cow position: | chr19:14940722-14941079 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 238, 249 |
| Conread position: | 27-400 |
| Cow position: | chr19:20677762-20678135 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 165, 149 |
| Conread position: | 27-401 |
| Cow position: | chr19:23597011-23597382 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 163, 21 |
| Conread position: | 28-390 |
| Cow position: | chr19:23614756-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 68 |
| Conread position: | 28-399 |
| Cow position: | chr19:14960411-14960042 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 65 |
| Conread position: | 28-400 |
| Cow position: | chr19:14959671-14959301 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 29-389 |
| Cow position: | chr19:23614337-23614699 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 147, 161 |
| Conread position: | 30-394 |
| Cow position: | chr19:23649788-23650152 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 165, 182 |
| Conread position: | 30-397 |
| Cow position: | chr19:23597179-23597546 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 75, 70 |
| Conread position: | 30-398 |
| Cow position: | chr19:14940138-14940506 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 30-398 |
| Cow position: | chr19:23613918-23614286 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 30-401 |
| Cow position: | chr19:23597095-23597466 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-390 |
| Cow position: | chr19:14940063-14940414 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 40-400 |
| Cow position: | chr19:14940568-14940928 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 40-401 |
| Cow position: | chr19:14940652-14941013 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 65, 50 |
| Conread position: | 41-398 |
| Cow position: | chr19:20635472-20635115 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 41-398 |
| Cow position: | chr19:23613761-23614118 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 65, 54 |
| Conread position: | 41-398 |
| Cow position: | chr19:23614013-23614370 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 138, 168 |
| Conread position: | 42-398 |
| Cow position: | chr19:23614602-23614958 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 52-400 |
| Cow position: | chr19:14939992-14940340 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 57-399 |
| Cow position: | chr19:23650067-23650409 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 102, 96 |
| Conread position: | 57-400 |
| Cow position: | chr19:14960132-14959791 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 133, 122 |
| Conread position: | 59-398 |
| Cow position: | chr19:20677626-20677965 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 64-396 |
| Cow position: | chr19:43570040-43569709 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 43, 28 |
Show alignments to all cow chromosomes.