Cow genome map

Conread name: Pig1-58H01

Conread position: 1-400
Cow position: chr22:12476103-12475703 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 258
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 21, 6

Conread position: 1-401
Cow position: chr22:11701219-11701620 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 252
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 6

Conread position: 2-398
Cow position: chr22:12458320-12457924 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 245
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 104, 90

Conread position: 2-401
Cow position: chr22:12458236-12457837 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 249
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 192, 215

Conread position: 3-339
Cow position: chr22:46654050-46654387 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 204
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 181, 172

Conread position: 3-397
Cow position: chr22:12418990-12418596 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 246
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 191, 173

Conread position: 3-398
Cow position: chr22:12399807-12399412 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 254
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 103, 89

Conread position: 4-400
Cow position: chr22:11640642-11641040 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 259
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 15, 45

Conread position: 7-401
Cow position: chr22:14429604-14429997 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 246
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 62, 12

Conread position: 12-389
Cow position: chr22:12399126-12398749 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 240
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 182, 200

Conread position: 12-400
Cow position: chr22:46654143-46654531 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 236
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 109, 99

Conread position: 16-398
Cow position: chr22:12432277-12431896 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 235
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 167, 11

Conread position: 18-397
Cow position: chr22:12458639-12458261 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 243
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 6, 23

Conread position: 19-300
Cow position: chr22:12458051-12457770 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 177
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 19-401
Cow position: chr22:12385361-12384979 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 250
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 163, 177

Conread position: 19-407
Cow position: chr22:12399287-12398899 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 255
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 184, 193

Conread position: 20-309
Cow position: chr22:12475579-12475290 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 182
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 162, 156

Conread position: 20-391
Cow position: chr22:12431518-12431147 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 236
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 174, 151

Conread position: 20-394
Cow position: chr22:11641080-11641455 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 241
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 179, 151

Conread position: 20-398
Cow position: chr22:11640828-11641206 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 235
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 20-398
Cow position: chr22:12399370-12398992 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 237
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 20-398
Cow position: chr22:12432106-12431728 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 247
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 20-399
Cow position: chr22:46654235-46654614 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 229
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 164, 155

Conread position: 20-400
Cow position: chr22:12431182-12430802 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 244
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 92, 72

Conread position: 20-400
Cow position: chr22:12432022-12431642 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 246
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 164, 159

Conread position: 20-401
Cow position: chr22:12431602-12431221 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 20-407
Cow position: chr22:12431266-12430879 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 253
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 180, 156

Conread position: 20-416
Cow position: chr22:46654403-46654800 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 249
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 95, 75

Conread position: 21-379
Cow position: chr22:12431013-12430655 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 219
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 21-379
Cow position: chr22:12431769-12431411 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 227
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 21-397
Cow position: chr22:12476166-12475790 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 21-398
Cow position: chr22:12385529-12385150 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 244
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 85, 75

Conread position: 21-398
Cow position: chr22:12399705-12399328 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 237
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 85, 79

Conread position: 21-400
Cow position: chr22:12475914-12475535 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 243
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 21-400
Cow position: chr22:12499177-12499556 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 232
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 70

Conread position: 21-400
Cow position: chr22:12499345-12499724 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 240
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 21-401
Cow position: chr22:12399201-12398821 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 191

Conread position: 21-406
Cow position: chr22:12499093-12499478 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 71

Conread position: 28-398
Cow position: chr22:12399446-12399076 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 234
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 29-398
Cow position: chr22:12475822-12475453 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 29-398
Cow position: chr22:12499437-12499806 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 29-400
Cow position: chr22:12431341-12430970 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 29-400
Cow position: chr22:12431845-12431474 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 244
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 154, 180

Conread position: 30-375
Cow position: chr22:12458124-12457779 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 221
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 277, 270

Conread position: 30-388
Cow position: chr22:12418795-12418435 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 226
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 164, 148

Conread position: 30-389
Cow position: chr22:12385266-12384907 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 232
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 181, 172

Conread position: 30-394
Cow position: chr22:11701333-11701700 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 235
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 83, 73

Conread position: 30-397
Cow position: chr22:11640754-11641121 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 239
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 76, 63

Conread position: 30-398
Cow position: chr22:12475989-12475621 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-398
Cow position: chr22:12499270-12499638 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-399
Cow position: chr22:12431088-12430719 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 245
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 160, 147

Conread position: 30-400
Cow position: chr22:12431676-12431306 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-401
Cow position: chr22:11666511-11666882 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 237
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 82, 74

Conread position: 30-401
Cow position: chr22:12385604-12385231 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 236
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 76, 66

Conread position: 40-400
Cow position: chr22:14430224-14430584 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 225
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 75

Conread position: 40-400
Cow position: chr22:46654003-46654363 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 223
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 69, 75

Conread position: 40-401
Cow position: chr22:11641016-11641377 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 240
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 65, 51

Conread position: 41-400
Cow position: chr22:14468050-14468409 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 238
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 67, 53

Conread position: 42-391
Cow position: chr22:12458532-12458184 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 221
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 116, 111

Conread position: 42-400
Cow position: chr22:12431916-12431558 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 238
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 162, 126

Conread position: 42-401
Cow position: chr22:14468135-14468494 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 224
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 59, 70

Conread position: 51-394
Cow position: chr22:11666615-11666959 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 218
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 7, 53

Conread position: 52-401
Cow position: chr22:12476219-12475870 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 229
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 32, 54

Conread position: 52-407
Cow position: chr22:12385412-12385057 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 224
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 133, 160

Conread position: 53-399
Cow position: chr22:12431400-12431055 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 232
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 125, 8

Conread position: 54-399
Cow position: chr22:12432156-12431811 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 216
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 56-400
Cow position: chr22:12458434-12458090 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 228
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 51, 36

Conread position: 56-401
Cow position: chr22:12418853-12418508 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 215
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 36

Conread position: 57-398
Cow position: chr22:12432321-12431980 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 213
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 60-339
Cow position: chr22:11701111-11701390 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 188
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 36

Conread position: 60-388
Cow position: chr22:12419017-12418689 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 209
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 143, 150

Conread position: 60-401
Cow position: chr22:11666457-11666798 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 220
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 24, 46

Conread position: 71-399
Cow position: chr22:12498891-12499219 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 211
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 35, 26

Conread position: 71-400
Cow position: chr22:12476368-12476039 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 213
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 36, 29

Conread position: 101-398
Cow position: chr22:12476422-12476125 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 188
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 93, 81

Conread position: 114-398
Cow position: chr22:12432432-12432148 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 176
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 118-400
Cow position: chr22:12458624-12458342 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 185
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 91, 62

Conread position: 150-398
Cow position: chr22:12498886-12499134 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 161
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 28

Conread position: 222-399
Cow position: chr22:12419292-12419115 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.