Cow genome map

Conread name: Pig1-62K19

Conread position: 1-165
Cow position: chr17:9565391-9565235 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 2-133
Cow position: chr17:40288911-40289040 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 15, 76

Conread position: 2-165
Cow position: chr17:11215803-11215968 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 71, 0

Conread position: 3-165
Cow position: chr17:31231032-31231188 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 3-177
Cow position: chr17:32457481-32457656 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 72, 148

Conread position: 4-136
Cow position: chr17:3782130-3781998 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 74, 111

Conread position: 4-136
Cow position: chr17:10431891-10432024 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 68

Conread position: 4-136
Cow position: chr17:25502197-25502062 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 4-137
Cow position: chr17:9746599-9746466 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 64, 77

Conread position: 4-137
Cow position: chr17:11832028-11832167 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 17, 111

Conread position: 4-137
Cow position: chr17:13922570-13922430 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 4-137
Cow position: chr17:40771919-40771788 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 4-140
Cow position: chr17:25032395-25032535 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 74

Conread position: 4-162
Cow position: chr17:33275663-33275823 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 15, 140

Conread position: 4-163
Cow position: chr17:7698135-7697980 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 65

Conread position: 4-183
Cow position: chr17:21478835-21479018 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 6-168
Cow position: chr17:8690360-8690519 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 62, 0

Conread position: 8-137
Cow position: chr17:6624336-6624210 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 11, 61

Conread position: 8-137
Cow position: chr17:11215149-11215280 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 37, 0

Conread position: 8-137
Cow position: chr17:16158574-16158442 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 64

Conread position: 8-137
Cow position: chr17:20992959-20993088 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 112
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 71, 25

Conread position: 8-137
Cow position: chr17:21489542-21489672 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 25, 74

Conread position: 8-137
Cow position: chr17:26000200-26000068 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 8-137
Cow position: chr17:27058474-27058604 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 69

Conread position: 8-137
Cow position: chr17:32349150-32349024 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 71, 98

Conread position: 8-139
Cow position: chr17:25097538-25097412 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 8-142
Cow position: chr17:6936597-6936729 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 67, 20

Conread position: 8-160
Cow position: chr17:2034612-2034459 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 14, 69

Conread position: 8-165
Cow position: chr17:7142944-7142789 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 64

Conread position: 8-165
Cow position: chr17:41289942-41290095 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 61

Conread position: 8-170
Cow position: chr17:21292963-21293120 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 64, 95

Conread position: 8-172
Cow position: chr17:21755353-21755513 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 8-172
Cow position: chr17:33271600-33271764 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 127

Conread position: 8-175
Cow position: chr17:25189368-25189204 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 65, 60

Conread position: 8-176
Cow position: chr17:21738791-21738961 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 13, 64

Conread position: 9-130
Cow position: chr17:28468205-28468088 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 9-134
Cow position: chr17:11281018-11281156 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 9-137
Cow position: chr17:11101724-11101849 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 60

Conread position: 9-137
Cow position: chr17:17266813-17266942 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 9-137
Cow position: chr17:27202968-27203092 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 9-137
Cow position: chr17:28540109-28539981 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 10, 67

Conread position: 9-162
Cow position: chr17:34596018-34595867 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 9-165
Cow position: chr17:9117726-9117570 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 24, 69

Conread position: 10-130
Cow position: chr17:14848461-14848585 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 10-137
Cow position: chr17:1113965-1113842 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 10-162
Cow position: chr17:26448623-26448471 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 65

Conread position: 11-170
Cow position: chr17:267508-267664 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 8, 58

Conread position: 12-137
Cow position: chr17:1035522-1035646 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 72, 56

Conread position: 12-137
Cow position: chr17:7590388-7590506 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 12-137
Cow position: chr17:20848597-20848474 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 12-137
Cow position: chr17:21628553-21628431 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 12-137
Cow position: chr17:23798356-23798230 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 12-137
Cow position: chr17:39857465-39857345 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 12-175
Cow position: chr17:31856748-31856586 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 61, 131

Conread position: 12-206
Cow position: chr17:29026146-29025955 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 93, 67

Conread position: 13-121
Cow position: chr17:21922560-21922666 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 13-133
Cow position: chr17:20932405-20932285 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 92
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-135
Cow position: chr17:14762048-14762166 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 13-135
Cow position: chr17:30665346-30665225 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 13-136
Cow position: chr17:7654378-7654504 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 13-136
Cow position: chr17:24883497-24883615 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 13-137
Cow position: chr17:1469453-1469327 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 106
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 65, 0

Conread position: 13-137
Cow position: chr17:9770584-9770462 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 13-137
Cow position: chr17:11296723-11296591 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 13-137
Cow position: chr17:17410367-17410242 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 13-137
Cow position: chr17:18860647-18860771 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 68, 55

Conread position: 13-137
Cow position: chr17:22246063-22245943 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 13-137
Cow position: chr17:36275407-36275289 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 13-137
Cow position: chr17:38362909-38363035 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 13-159
Cow position: chr17:38263416-38263563 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 121

Conread position: 13-165
Cow position: chr17:979086-979230 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 13-165
Cow position: chr17:24077477-24077327 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 65, 42

Conread position: 13-170
Cow position: chr17:923953-923799 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 66, 84

Conread position: 14-137
Cow position: chr17:10458863-10458986 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 105
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 64, 69

Conread position: 14-170
Cow position: chr17:24550250-24550097 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 67, 54

Conread position: 16-129
Cow position: chr17:17193563-17193452 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 97, 52

Conread position: 16-137
Cow position: chr17:11839788-11839667 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 54

Conread position: 16-171
Cow position: chr17:20780579-20780428 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 17-137
Cow position: chr17:27795719-27795597 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 18-135
Cow position: chr17:21959619-21959733 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 18-137
Cow position: chr17:1466359-1466478 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 64, 17

Conread position: 18-137
Cow position: chr17:27048225-27048109 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 18-137
Cow position: chr17:44232643-44232763 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 18-138
Cow position: chr17:25126419-25126302 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 105
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 56, 0

Conread position: 18-165
Cow position: chr17:12059024-12059171 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 64, 10

Conread position: 18-165
Cow position: chr17:24761159-24761304 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 18-173
Cow position: chr17:2810697-2810543 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 118

Conread position: 19-137
Cow position: chr17:3471487-3471372 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 100
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 19-137
Cow position: chr17:22564256-22564133 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 19-137
Cow position: chr17:36864698-36864582 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 62, 88

Conread position: 20-137
Cow position: chr17:14003892-14003769 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 20-137
Cow position: chr17:15684576-15684464 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 48

Conread position: 20-168
Cow position: chr17:40741717-40741570 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 56

Conread position: 20-172
Cow position: chr17:1353464-1353315 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 21-136
Cow position: chr17:21495444-21495329 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 26-138
Cow position: chr17:25122347-25122456 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 33-137
Cow position: chr17:1295517-1295618 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 89
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 37-137
Cow position: chr17:21312759-21312859 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 39-140
Cow position: chr17:5381946-5382044 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 39-165
Cow position: chr17:35311475-35311349 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 42, 29

Show alignments to all cow chromosomes.