Cow genome map
| Conread name: | Pig1-62K19 |
| Conread position: | 2-137 |
| Cow position: | chr27:23890846-23890985 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2-139 |
| Cow position: | chr27:24331629-24331769 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 2-165 |
| Cow position: | chr27:30914918-30915079 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 2-172 |
| Cow position: | chr27:20247896-20247726 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 3-165 |
| Cow position: | chr27:20354503-20354656 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 4-137 |
| Cow position: | chr27:18593183-18593313 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 4-137 |
| Cow position: | chr27:23860074-23860215 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 4-165 |
| Cow position: | chr27:30868830-30868668 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 20, 84 |
| Conread position: | 6-137 |
| Cow position: | chr27:9169730-9169599 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 7-137 |
| Cow position: | chr27:7538159-7538031 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 72, 8 |
| Conread position: | 8-135 |
| Cow position: | chr27:27038923-27038796 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 105 |
| Conread position: | 8-137 |
| Cow position: | chr27:20514737-20514867 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 8-137 |
| Cow position: | chr27:22225678-22225549 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 11, 84 |
| Conread position: | 8-137 |
| Cow position: | chr27:23735876-23736006 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 85 |
| Conread position: | 8-137 |
| Cow position: | chr27:26509240-26509115 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 8-137 |
| Cow position: | chr27:31017911-31017788 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 31 |
| Conread position: | 8-140 |
| Cow position: | chr27:28260621-28260490 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 14, 62 |
| Conread position: | 8-165 |
| Cow position: | chr27:22559909-22559750 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 8-168 |
| Cow position: | chr27:21975967-21976123 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 8-170 |
| Cow position: | chr27:23632514-23632672 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 93, 66 |
| Conread position: | 8-172 |
| Cow position: | chr27:25809601-25809442 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 151, 60 |
| Conread position: | 8-176 |
| Cow position: | chr27:23554413-23554245 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 9-126 |
| Cow position: | chr27:14303653-14303769 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 62 |
| Conread position: | 9-167 |
| Cow position: | chr27:1290932-1290774 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 119, 92 |
| Conread position: | 9-172 |
| Cow position: | chr27:19546595-19546432 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 79, 119 |
| Conread position: | 10-130 |
| Cow position: | chr27:4858719-4858601 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 10-134 |
| Cow position: | chr27:29593709-29593585 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 10-135 |
| Cow position: | chr27:13875648-13875775 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 10-136 |
| Cow position: | chr27:20803739-20803612 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 10-137 |
| Cow position: | chr27:6550383-6550503 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 10-137 |
| Cow position: | chr27:15643093-15643217 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 10-137 |
| Cow position: | chr27:27844078-27843949 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 10-137 |
| Cow position: | chr27:30764950-30765082 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-137 |
| Cow position: | chr27:31148681-31148807 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 10-138 |
| Cow position: | chr27:3306694-3306817 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 10-161 |
| Cow position: | chr27:28896802-28896948 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 10-175 |
| Cow position: | chr27:8942766-8942601 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 11-137 |
| Cow position: | chr27:24113119-24113248 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 11-137 |
| Cow position: | chr27:26979791-26979662 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 57 |
| Conread position: | 12-136 |
| Cow position: | chr27:22454853-22454733 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 12-137 |
| Cow position: | chr27:2683223-2683098 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 66, 56 |
| Conread position: | 12-137 |
| Cow position: | chr27:15925268-15925387 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 12-168 |
| Cow position: | chr27:24999818-24999665 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 70, 56 |
| Conread position: | 12-170 |
| Cow position: | chr27:15215152-15215312 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 12-176 |
| Cow position: | chr27:732497-732651 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 13-133 |
| Cow position: | chr27:25379912-25380035 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 13-136 |
| Cow position: | chr27:18558280-18558404 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 13-137 |
| Cow position: | chr27:2592466-2592594 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 13-137 |
| Cow position: | chr27:4386138-4386015 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 13-137 |
| Cow position: | chr27:8962334-8962210 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 13-137 |
| Cow position: | chr27:28001889-28001764 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 13-137 |
| Cow position: | chr27:30359330-30359451 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 13-137 |
| Cow position: | chr27:30362170-30362289 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 13-138 |
| Cow position: | chr27:6302545-6302414 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 13-139 |
| Cow position: | chr27:30354421-30354295 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-155 |
| Cow position: | chr27:8062427-8062290 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 13-165 |
| Cow position: | chr27:12596693-12596839 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 13-165 |
| Cow position: | chr27:30672635-30672492 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 13-170 |
| Cow position: | chr27:8263414-8263260 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 115 |
| Conread position: | 13-176 |
| Cow position: | chr27:27641089-27640916 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 15-165 |
| Cow position: | chr27:6925010-6925161 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 116 |
| Conread position: | 18-130 |
| Cow position: | chr27:17646240-17646128 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-137 |
| Cow position: | chr27:20085493-20085610 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 18-160 |
| Cow position: | chr27:17918385-17918246 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 18-169 |
| Cow position: | chr27:19660860-19661013 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 18-182 |
| Cow position: | chr27:6350912-6350750 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 50, 101 |
| Conread position: | 19-137 |
| Cow position: | chr27:4486696-4486578 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-137 |
| Cow position: | chr27:30988726-30988842 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 19-143 |
| Cow position: | chr27:15865536-15865664 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 19-165 |
| Cow position: | chr27:21569911-21569767 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 126, 49 |
| Conread position: | 19-170 |
| Cow position: | chr27:6522973-6523117 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 20-137 |
| Cow position: | chr27:29283478-29283363 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 20-137 |
| Cow position: | chr27:29380783-29380902 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 20-165 |
| Cow position: | chr27:26135069-26135213 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 20-173 |
| Cow position: | chr27:16088737-16088891 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 21-137 |
| Cow position: | chr27:4155927-4156048 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 24-165 |
| Cow position: | chr27:20570053-20570192 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 24-168 |
| Cow position: | chr27:14902719-14902577 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 32-137 |
| Cow position: | chr27:68147-68249 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 33-169 |
| Cow position: | chr27:4011622-4011753 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 34-165 |
| Cow position: | chr27:29236522-29236655 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 38-178 |
| Cow position: | chr27:16965520-16965661 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 61 |
Show alignments to all cow chromosomes.