Cow genome map

Conread name: Pig1-62K19

Conread position: 1-139
Cow position: chrX:35413686-35413555 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 118, 36

Conread position: 1-169
Cow position: chrX:14973670-14973832 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 2-137
Cow position: chrX:29680186-29680323 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 116
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 15, 70

Conread position: 2-137
Cow position: chrX:39558273-39558413 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 2-170
Cow position: chrX:45403750-45403921 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 72

Conread position: 4-123
Cow position: chrX:19943161-19943286 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 4-130
Cow position: chrX:878307-878439 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 4-130
Cow position: chrX:10516326-10516194 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 4-130
Cow position: chrX:28865933-28866061 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 50, 73

Conread position: 4-130
Cow position: chrX:32978012-32978133 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 64, 0

Conread position: 4-131
Cow position: chrX:169473-169602 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 18, 79

Conread position: 4-131
Cow position: chrX:23091943-23091811 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 18, 102

Conread position: 4-137
Cow position: chrX:161485-161350 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 101

Conread position: 4-137
Cow position: chrX:11614767-11614637 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 4-137
Cow position: chrX:22387177-22387305 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 112
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 4-137
Cow position: chrX:34402073-34401935 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 14, 60

Conread position: 4-137
Cow position: chrX:41068798-41068658 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 4-138
Cow position: chrX:27705659-27705523 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 18, 56

Conread position: 4-139
Cow position: chrX:27680471-27680331 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 131

Conread position: 4-165
Cow position: chrX:32821101-32820939 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 79

Conread position: 4-168
Cow position: chrX:151974-151811 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 97, 0

Conread position: 4-169
Cow position: chrX:44397083-44396923 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 4-172
Cow position: chrX:27228199-27228032 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 13, 68

Conread position: 7-137
Cow position: chrX:38549517-38549384 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 113
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 73

Conread position: 8-126
Cow position: chrX:18964760-18964876 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 71, 20

Conread position: 8-129
Cow position: chrX:44339256-44339379 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 72, 60

Conread position: 8-130
Cow position: chrX:4043798-4043916 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 8, 39

Conread position: 8-130
Cow position: chrX:7722057-7721933 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 8-136
Cow position: chrX:6690191-6690318 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 64

Conread position: 8-137
Cow position: chrX:917299-917428 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 45

Conread position: 8-137
Cow position: chrX:15147128-15147250 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 8-137
Cow position: chrX:18694862-18694987 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 8-137
Cow position: chrX:19003362-19003237 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 8-137
Cow position: chrX:20881874-20882000 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 8-137
Cow position: chrX:25232658-25232528 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 8-137
Cow position: chrX:37836651-37836526 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 8-137
Cow position: chrX:48243401-48243528 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 8-140
Cow position: chrX:47054456-47054593 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 8-162
Cow position: chrX:5638100-5638256 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 76

Conread position: 8-163
Cow position: chrX:21004749-21004591 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 70, 109

Conread position: 8-164
Cow position: chrX:32743603-32743443 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 8-165
Cow position: chrX:6563589-6563431 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 74, 143

Conread position: 8-165
Cow position: chrX:17662530-17662682 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 8-165
Cow position: chrX:20790982-20790832 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 29, 61

Conread position: 8-165
Cow position: chrX:38094451-38094612 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 8-169
Cow position: chrX:29032480-29032313 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 8-173
Cow position: chrX:45598536-45598697 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 16, 66

Conread position: 8-178
Cow position: chrX:5900531-5900368 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 9-137
Cow position: chrX:17888355-17888481 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 9-137
Cow position: chrX:22466020-22465879 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 9-137
Cow position: chrX:23513949-23514078 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 109
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 13, 85

Conread position: 9-137
Cow position: chrX:29549481-29549610 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 9-168
Cow position: chrX:5679504-5679657 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 60

Conread position: 9-169
Cow position: chrX:37119661-37119499 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 10-127
Cow position: chrX:14900666-14900782 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 65

Conread position: 10-137
Cow position: chrX:1615976-1616107 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 10-137
Cow position: chrX:11073127-11073255 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 99

Conread position: 10-137
Cow position: chrX:29194297-29194171 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 12, 60

Conread position: 10-137
Cow position: chrX:29601764-29601893 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 108
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 10-137
Cow position: chrX:36356175-36356052 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 10-140
Cow position: chrX:40480806-40480934 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 11-131
Cow position: chrX:31626911-31627038 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 11-137
Cow position: chrX:41238292-41238414 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 12-135
Cow position: chrX:21327974-21327845 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 12-136
Cow position: chrX:4109245-4109128 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 12-137
Cow position: chrX:3580005-3579883 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 12-137
Cow position: chrX:12405320-12405446 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 12-137
Cow position: chrX:17301245-17301372 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 12-137
Cow position: chrX:21593348-21593225 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 70, 56

Conread position: 12-137
Cow position: chrX:24365760-24365888 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 12-137
Cow position: chrX:27261252-27261126 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 122

Conread position: 12-137
Cow position: chrX:34502981-34502859 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 12-137
Cow position: chrX:41166901-41167027 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 12-138
Cow position: chrX:38964169-38964041 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 70, 0

Conread position: 12-143
Cow position: chrX:44703013-44703141 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 12-157
Cow position: chrX:23113346-23113195 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 121

Conread position: 12-164
Cow position: chrX:11717722-11717880 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 12-165
Cow position: chrX:27685309-27685157 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 12-165
Cow position: chrX:28134401-28134256 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 110, 31

Conread position: 12-171
Cow position: chrX:7710478-7710634 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 147, 62

Conread position: 12-207
Cow position: chrX:46587883-46587693 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 63, 135

Conread position: 13-111
Cow position: chrX:34315579-34315479 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 13-130
Cow position: chrX:26625611-26625732 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 64, 55

Conread position: 13-130
Cow position: chrX:32623631-32623511 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 13-134
Cow position: chrX:27511488-27511367 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 90, 62

Conread position: 13-135
Cow position: chrX:42235464-42235589 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 13-136
Cow position: chrX:10411926-10412048 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 13-137
Cow position: chrX:8797316-8797190 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 13-137
Cow position: chrX:9365616-9365738 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 105
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 67, 0

Conread position: 13-137
Cow position: chrX:10831430-10831556 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 13-137
Cow position: chrX:15820655-15820534 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 13-137
Cow position: chrX:16348504-16348631 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 13-137
Cow position: chrX:19188991-19188875 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 13-137
Cow position: chrX:21566467-21566341 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 13-137
Cow position: chrX:23562692-23562572 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 13-137
Cow position: chrX:27393966-27394083 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 13-137
Cow position: chrX:29121107-29120983 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 13-137
Cow position: chrX:29289638-29289516 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 77, 55

Conread position: 13-137
Cow position: chrX:39220139-39220017 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 74, 55

Conread position: 13-137
Cow position: chrX:39415310-39415429 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 13-137
Cow position: chrX:42171234-42171359 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 13-137
Cow position: chrX:42247122-42247249 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 64, 0

Conread position: 13-137
Cow position: chrX:43730164-43730281 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 13-137
Cow position: chrX:46072757-46072883 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 13-139
Cow position: chrX:7351360-7351236 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 13-139
Cow position: chrX:11589528-11589652 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 0

Conread position: 13-139
Cow position: chrX:38654370-38654497 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 13-145
Cow position: chrX:43973605-43973472 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 69, 46

Conread position: 13-165
Cow position: chrX:11633742-11633591 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 64, 123

Conread position: 13-165
Cow position: chrX:30543224-30543377 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 55, 131

Conread position: 13-165
Cow position: chrX:41027219-41027067 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 124

Conread position: 13-168
Cow position: chrX:11856490-11856337 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 67, 110

Conread position: 13-169
Cow position: chrX:13382391-13382238 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 122, 0

Conread position: 13-169
Cow position: chrX:25338248-25338087 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 13-169
Cow position: chrX:34565346-34565187 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 68, 132

Conread position: 13-170
Cow position: chrX:36961701-36961549 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 129
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 55, 0

Conread position: 13-176
Cow position: chrX:5872377-5872221 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 13-177
Cow position: chrX:42855518-42855352 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 104

Conread position: 13-184
Cow position: chrX:44192387-44192555 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 120

Conread position: 17-178
Cow position: chrX:42789677-42789520 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 7, 52

Conread position: 18-135
Cow position: chrX:31250443-31250326 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 61, 72

Conread position: 18-136
Cow position: chrX:6278443-6278562 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 18-136
Cow position: chrX:23561912-23561799 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 18-137
Cow position: chrX:17630748-17630869 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 18-137
Cow position: chrX:28845888-28845768 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 77, 0

Conread position: 18-137
Cow position: chrX:36514838-36514957 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 18-137
Cow position: chrX:40680669-40680548 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 18-137
Cow position: chrX:40692696-40692816 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 18-137
Cow position: chrX:46532440-46532564 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 18-137
Cow position: chrX:48044459-48044576 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 18-139
Cow position: chrX:15007094-15007214 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 63, 50

Conread position: 18-140
Cow position: chrX:25037042-25036921 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 18-169
Cow position: chrX:12018347-12018199 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 18-172
Cow position: chrX:20168613-20168459 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 142, 50

Conread position: 19-130
Cow position: chrX:34238773-34238659 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 19-136
Cow position: chrX:48201348-48201234 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 21-137
Cow position: chrX:8925751-8925638 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 21-137
Cow position: chrX:10959343-10959460 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 21-165
Cow position: chrX:42461692-42461833 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 21-170
Cow position: chrX:42875035-42874890 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 22-137
Cow position: chrX:5017360-5017477 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 22-139
Cow position: chrX:35681393-35681276 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 100
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 57, 46

Conread position: 22-170
Cow position: chrX:16416560-16416413 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 46, 34

Conread position: 23-137
Cow position: chrX:4515735-4515621 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 23-137
Cow position: chrX:42994663-42994550 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 26-137
Cow position: chrX:17498132-17498022 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 76

Conread position: 28-137
Cow position: chrX:6463656-6463548 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 40

Conread position: 28-163
Cow position: chrX:41199153-41199018 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 17, 42

Conread position: 29-172
Cow position: chrX:25282972-25283110 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 0

Conread position: 32-172
Cow position: chrX:40648027-40647890 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 33-136
Cow position: chrX:8326799-8326694 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 33-165
Cow position: chrX:12116087-12115955 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 47, 36

Conread position: 33-173
Cow position: chrX:47379427-47379570 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 102, 0

Conread position: 35-160
Cow position: chrX:11181395-11181519 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 97, 0

Conread position: 39-137
Cow position: chrX:38439515-38439415 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 43-136
Cow position: chrX:31252447-31252356 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 0

Show alignments to all cow chromosomes.