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Cow genome map

           
Conread name:
           
Pig1-63I11
        

               
Conread position:
               
1-249
               

               
Cow position:
               
chrX:6234420-6234657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
2-138
               

               
Cow position:
               
chrX:21327940-21327802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
2-161
               

               
Cow position:
               
chrX:27946025-27946183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
2-167
               

               
Cow position:
               
chrX:45875421-45875261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
2-172
               

               
Cow position:
               
chrX:41027188-41027022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chrX:7710510-7710679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
123, 30
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:29723769-29723597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
2-198
               

               
Cow position:
               
chrX:27228155-27227966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
119, 31
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chrX:10278840-10278645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chrX:22921350-22921143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 29
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chrX:6407575-6407376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chrX:46433520-46433310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
2-216
               

               
Cow position:
               
chrX:4279089-4279290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chrX:24287902-24288111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
151, 36
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chrX:42235495-42235722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
34, 119
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chrX:45875027-45874806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
2-239
               

               
Cow position:
               
chrX:47300874-47301102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chrX:47302848-47303079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chrX:46587851-46587611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chrX:10831461-10831704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chrX:26286010-26285772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
2-255
               

               
Cow position:
               
chrX:28013418-28013655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
243, 27
               

               
Conread position:
               
2-255
               

               
Cow position:
               
chrX:29601799-29602048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 31
               

               
Conread position:
               
2-255
               

               
Cow position:
               
chrX:40567627-40567384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chrX:36961670-36961416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chrX:46072788-46073044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
242, 108
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chrX:1499694-1499446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 27
               

               
Conread position:
               
2-266
               

               
Cow position:
               
chrX:5900495-5900231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
2-266
               

               
Cow position:
               
chrX:47054492-47054754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
26, 131
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chrX:14900701-14900949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chrX:42247153-42247412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 109
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chrX:47756899-47757157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 35
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chrX:11856459-11856195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 37
               

               
Conread position:
               
2-275
               

               
Cow position:
               
chrX:29121076-29120825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chrX:11455013-11455292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
25, 180
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chrX:16416538-16416268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 13
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chrX:21004713-21004444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chrX:21672583-21672311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 28
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chrX:26625642-26625917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chrX:34543813-34543547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chrX:37119625-37119359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
160, 31
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chrX:30832823-30833079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chrX:6278469-6278753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chrX:44873528-44873797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
211, 43
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chrX:37836615-37836337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 30
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chrX:7351329-7351049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 29
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chrX:14599566-14599283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chrX:38964137-38963859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 38
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chrX:44054831-44054552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
2-293
               

               
Cow position:
               
chrX:35288687-35288407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
243, 70
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chrX:1616012-1616305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 123
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chrX:40826722-40827002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
142, 22
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chrX:46722705-46722996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 30
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chrX:33466637-33466361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chrX:7571934-7571649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
243, 31
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chrX:27705615-27705336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
125, 13
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chrX:30543255-30543539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chrX:47379438-47379724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
93, 39
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:5017382-5017664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
243, 123
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:8731123-8730821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:8797285-8796992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 124
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:8900056-8899766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 31
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:10411957-10412244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 37
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:11082593-11082871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:12018321-12018017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 35
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:12309357-12309646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 30
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:14925029-14924742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 7
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:17498114-17497838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 39
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:27508993-27509278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 37
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:27516559-27516275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 48
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:28105947-28105664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
197, 30
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:30133289-30133582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
148, 49
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:40480840-40481131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 36
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:42875012-42874720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:47873307-47873599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
243, 31
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:48195006-48195299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 46
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chrX:5638140-5638429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 27
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chrX:41790414-41790700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 31
               

               
Conread position:
               
2-301
               

               
Cow position:
               
chrX:23563762-23564058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 30
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chrX:14973712-14973994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
209, 36
               

               
Conread position:
               
2-309
               

               
Cow position:
               
chrX:29289607-29289307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
2-310
               

               
Cow position:
               
chrX:4269036-4269337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 31
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chrX:10096061-10095748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
2-325
               

               
Cow position:
               
chrX:24365792-24366111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
47, 126
               

               
Conread position:
               
2-327
               

               
Cow position:
               
chrX:40648015-40647693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 37
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chrX:15007120-15007449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 30
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chrX:28845862-28845546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chrX:38935309-38935041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
242, 29
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:15139519-15139795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 34
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chrX:37781082-37781338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
151, 47
               

               
Conread position:
               
5-166
               

               
Cow position:
               
chrX:20168584-20168428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chrX:28835876-28836105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chrX:13382357-13382098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 28
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chrX:27680424-27680175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
5-276
               

               
Cow position:
               
chrX:20752280-20752027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chrX:6563550-6563272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
119, 97
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chrX:23513989-23514258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 36
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chrX:44961777-44961507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
230, 36
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chrX:40789238-40788964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
134, 97
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chrX:878354-878621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
5-296
               

               
Cow position:
               
chrX:34402026-34401741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 8
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chrX:161438-161170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
150, 28
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chrX:19015463-19015184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 64
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chrX:25338214-25337919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 101
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chrX:38439507-38439215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 120
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chrX:40269517-40269218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chrX:44192421-44192700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
115, 28
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chrX:34238745-34238452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chrX:41199132-41198825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 28
               

               
Conread position:
               
6-258
               

               
Cow position:
               
chrX:11633707-11633460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
239, 35
               

               
Conread position:
               
6-262
               

               
Cow position:
               
chrX:1503364-1503117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
6-276
               

               
Cow position:
               
chrX:41166937-41167200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
6-292
               

               
Cow position:
               
chrX:23497642-23497915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
6-298
               

               
Cow position:
               
chrX:11717758-11718038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
6-298
               

               
Cow position:
               
chrX:22813093-22812804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 44
               

               
Conread position:
               
6-298
               

               
Cow position:
               
chrX:42461719-42462006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 27
               

               
Conread position:
               
6-298
               

               
Cow position:
               
chrX:47481825-47481540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
239, 31
               

               
Conread position:
               
6-299
               

               
Cow position:
               
chrX:917342-917629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 27
               

               
Conread position:
               
9-139
               

               
Cow position:
               
chrX:16348542-16348672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 113
               

               
Conread position:
               
9-212
               

               
Cow position:
               
chrX:4399148-4398954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
9-238
               

               
Cow position:
               
chrX:40809714-40809489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
9-280
               

               
Cow position:
               
chrX:41884390-41884658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 42
               

               
Conread position:
               
9-293
               

               
Cow position:
               
chrX:34565308-34565044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
33, 103
               

               
Conread position:
               
9-298
               

               
Cow position:
               
chrX:20339869-20340149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 30
               

               
Conread position:
               
9-298
               

               
Cow position:
               
chrX:42994635-42994356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 23
               

               
Conread position:
               
13-314
               

               
Cow position:
               
chrX:25419133-25419432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
14-266
               

               
Cow position:
               
chrX:44397032-44396789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
181, 18
               

               
Conread position:
               
14-267
               

               
Cow position:
               
chrX:35681359-35681118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 24
               

               
Conread position:
               
14-290
               

               
Cow position:
               
chrX:34441431-34441700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
14-296
               

               
Cow position:
               
chrX:28157517-28157229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 27
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chrX:31489537-31489254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 25
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chrX:45403808-45404092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 37
               

               
Conread position:
               
15-173
               

               
Cow position:
               
chrX:31986839-31987003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
15-178
               

               
Cow position:
               
chrX:9365660-9365815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
15-178
               

               
Cow position:
               
chrX:11614714-11614558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
15-297
               

               
Cow position:
               
chrX:33639994-33639708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
15-336
               

               
Cow position:
               
chrX:151921-151603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 26
               

               
Conread position:
               
16-189
               

               
Cow position:
               
chrX:12405366-12405539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
19-298
               

               
Cow position:
               
chrX:41878919-41879189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
21-241
               

               
Cow position:
               
chrX:43779833-43780053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
125, 107
               

               
Conread position:
               
21-259
               

               
Cow position:
               
chrX:36283366-36283126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
22-277
               

               
Cow position:
               
chrX:46532492-46532746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 14
               

               
Conread position:
               
22-297
               

               
Cow position:
               
chrX:3653771-3653506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
222, 78
               

               
Conread position:
               
22-298
               

               
Cow position:
               
chrX:47191398-47191653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
23-176
               

               
Cow position:
               
chrX:37955845-37955694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 64
               

               
Conread position:
               
24-180
               

               
Cow position:
               
chrX:48183285-48183433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
24-281
               

               
Cow position:
               
chrX:39938512-39938758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 87
               

               
Conread position:
               
26-298
               

               
Cow position:
               
chrX:33855225-33855499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
219, 99
               

               
Conread position:
               
28-264
               

               
Cow position:
               
chrX:10437662-10437889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
28-290
               

               
Cow position:
               
chrX:13868709-13868444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 148
               

               
Conread position:
               
28-298
               

               
Cow position:
               
chrX:32170880-32171140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
30-277
               

               
Cow position:
               
chrX:38549451-38549211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 80
               

               
Conread position:
               
32-294
               

               
Cow position:
               
chrX:46315373-46315634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 80
               

               
Conread position:
               
33-214
               

               
Cow position:
               
chrX:22387241-22387421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
156, 93
               

               
Conread position:
               
34-218
               

               
Cow position:
               
chrX:29680260-29680438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
159, 91
               

               
Conread position:
               
35-217
               

               
Cow position:
               
chrX:47165885-47166061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
39-287
               

               
Cow position:
               
chrX:35042221-35041972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
39-294
               

               
Cow position:
               
chrX:28878173-28878416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
39-296
               

               
Cow position:
               
chrX:12116041-12115785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 144
               

               
Conread position:
               
39-302
               

               
Cow position:
               
chrX:8925696-8925440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 86
               

               
Conread position:
               
41-185
               

               
Cow position:
               
chrX:36723097-36723239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chrX:47186328-47186498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
41-222
               

               
Cow position:
               
chrX:7336821-7336645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
159, 18
               

               
Conread position:
               
41-232
               

               
Cow position:
               
chrX:43730229-43730406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
41-249
               

               
Cow position:
               
chrX:48236813-48236603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
8, 59
               

               
Conread position:
               
41-264
               

               
Cow position:
               
chrX:11589594-11589816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
192, 85
               

               
Conread position:
               
41-268
               

               
Cow position:
               
chrX:16789859-16790065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
41-268
               

               
Cow position:
               
chrX:37048584-37048809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
201, 83
               

               
Conread position:
               
41-270
               

               
Cow position:
               
chrX:39558357-39558578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 84
               

               
Conread position:
               
41-276
               

               
Cow position:
               
chrX:15815078-15814861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
204, 47
               

               
Conread position:
               
41-278
               

               
Cow position:
               
chrX:42282421-42282192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
202, 59
               

               
Conread position:
               
41-280
               

               
Cow position:
               
chrX:4043867-4044090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
41-281
               

               
Cow position:
               
chrX:1514417-1514645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
204, 39
               

               
Conread position:
               
41-290
               

               
Cow position:
               
chrX:5872312-5872063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 26
               

               
Conread position:
               
41-290
               

               
Cow position:
               
chrX:34502915-34502670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
41-298
               

               
Cow position:
               
chrX:31294570-31294798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
41-302
               

               
Cow position:
               
chrX:7718847-7718590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 39
               

               
Conread position:
               
42-227
               

               
Cow position:
               
chrX:48035419-48035241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 45
               

               
Conread position:
               
42-240
               

               
Cow position:
               
chrX:4091640-4091448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
42-252
               

               
Cow position:
               
chrX:33000895-33000692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
42-255
               

               
Cow position:
               
chrX:8070705-8070915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
42-262
               

               
Cow position:
               
chrX:19019112-19019334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 104
               

               
Conread position:
               
42-266
               

               
Cow position:
               
chrX:45566628-45566404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
164, 47
               

               
Conread position:
               
42-276
               

               
Cow position:
               
chrX:17662600-17662833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
42-277
               

               
Cow position:
               
chrX:2383482-2383252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
6, 69
               

               
Conread position:
               
42-277
               

               
Cow position:
               
chrX:30420945-30421176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
144, 40
               

               
Conread position:
               
42-280
               

               
Cow position:
               
chrX:42492525-42492754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 40
               

               
Conread position:
               
42-282
               

               
Cow position:
               
chrX:35284613-35284375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
7, 87
               

               
Conread position:
               
42-290
               

               
Cow position:
               
chrX:21593281-21593033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 85
               

               
Conread position:
               
42-290
               

               
Cow position:
               
chrX:27442562-27442805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
8, 86
               

               
Conread position:
               
42-290
               

               
Cow position:
               
chrX:27446689-27446438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 117
               

               
Conread position:
               
42-290
               

               
Cow position:
               
chrX:28134338-28134096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
42-292
               

               
Cow position:
               
chrX:42338954-42339188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
203, 30
               

               
Conread position:
               
42-294
               

               
Cow position:
               
chrX:25815916-25816150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
203, 37
               

               
Conread position:
               
42-297
               

               
Cow position:
               
chrX:31948945-31949188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 47
               

               
Conread position:
               
42-297
               

               
Cow position:
               
chrX:43527502-43527246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 134
               

               
Conread position:
               
42-300
               

               
Cow position:
               
chrX:45598609-45598866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
202, 85
               

               
Conread position:
               
42-302
               

               
Cow position:
               
chrX:42507650-42507910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
8, 48
               

               
Conread position:
               
42-314
               

               
Cow position:
               
chrX:26440785-26441052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 87
               

               
Conread position:
               
43-200
               

               
Cow position:
               
chrX:35969094-35969243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 84
               

               
Conread position:
               
43-223
               

               
Cow position:
               
chrX:32821022-32820847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
43-247
               

               
Cow position:
               
chrX:842151-841952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
64, 121
               

               
Conread position:
               
43-281
               

               
Cow position:
               
chrX:34662856-34663080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
43-282
               

               
Cow position:
               
chrX:47232822-47232595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
202, 53
               

               
Conread position:
               
43-290
               

               
Cow position:
               
chrX:15485633-15485878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 134
               

               
Conread position:
               
43-293
               

               
Cow position:
               
chrX:9997342-9997586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
9, 69
               

               
Conread position:
               
43-297
               

               
Cow position:
               
chrX:48652730-48652988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
192, 34
               

               
Conread position:
               
43-298
               

               
Cow position:
               
chrX:1055403-1055646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
43-298
               

               
Cow position:
               
chrX:17541949-17541706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
43-298
               

               
Cow position:
               
chrX:32020128-32020380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 129
               

               
Conread position:
               
43-303
               

               
Cow position:
               
chrX:40183352-40183614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 0
               

               
Conread position:
               
43-339
               

               
Cow position:
               
chrX:24424397-24424693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
202, 58
               

               
Conread position:
               
44-243
               

               
Cow position:
               
chrX:31340699-31340502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 73
               

               
Conread position:
               
44-280
               

               
Cow position:
               
chrX:24132159-24132391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
7, 59
               

               
Conread position:
               
44-291
               

               
Cow position:
               
chrX:28846891-28847130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 82
               

               
Conread position:
               
44-298
               

               
Cow position:
               
chrX:33803015-33803274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
7, 64
               

               
Conread position:
               
45-178
               

               
Cow position:
               
chrX:21566393-21566261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
58, 82
               

               
Conread position:
               
45-189
               

               
Cow position:
               
chrX:5118513-5118654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
5, 24
               

               
Conread position:
               
45-219
               

               
Cow position:
               
chrX:36061147-36060973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
45-251
               

               
Cow position:
               
chrX:29542230-29542430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
200, 80
               

               
Conread position:
               
45-264
               

               
Cow position:
               
chrX:17042682-17042466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
77, 57
               

               
Conread position:
               
45-280
               

               
Cow position:
               
chrX:29032399-29032177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
45-281
               

               
Cow position:
               
chrX:17630817-17631043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
45-281
               

               
Cow position:
               
chrX:24259594-24259819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
45-290
               

               
Cow position:
               
chrX:45412670-45412906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
45-294
               

               
Cow position:
               
chrX:41674099-41673849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 81
               

               
Conread position:
               
45-296
               

               
Cow position:
               
chrX:7497229-7496989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
45-296
               

               
Cow position:
               
chrX:38094532-38094781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
45-298
               

               
Cow position:
               
chrX:4632862-4633110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 43
               

               
Conread position:
               
45-298
               

               
Cow position:
               
chrX:5046908-5047155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 92
               

               
Conread position:
               
45-298
               

               
Cow position:
               
chrX:14883969-14884222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 80
               

               
Conread position:
               
45-298
               

               
Cow position:
               
chrX:15545881-15545639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
45-298
               

               
Cow position:
               
chrX:18694937-18695179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 16
               

               
Conread position:
               
45-298
               

               
Cow position:
               
chrX:19188927-19188678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 81
               

               
Conread position:
               
45-298
               

               
Cow position:
               
chrX:35609978-35609728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 81
               

               
Conread position:
               
45-298
               

               
Cow position:
               
chrX:38936686-38936441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
225, 73
               

               
Conread position:
               
45-311
               

               
Cow position:
               
chrX:41743901-41743644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
45-341
               

               
Cow position:
               
chrX:25232580-25232283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
58, 72
               

               
Conread position:
               
46-274
               

               
Cow position:
               
chrX:30962885-30963106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
198, 80
               

               
Conread position:
               
46-280
               

               
Cow position:
               
chrX:43049337-43049102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 82
               

               
Conread position:
               
46-284
               

               
Cow position:
               
chrX:11656080-11655842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 82
               

               
Conread position:
               
46-290
               

               
Cow position:
               
chrX:11844260-11844491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
46-290
               

               
Cow position:
               
chrX:42171308-42171549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
46-298
               

               
Cow position:
               
chrX:34554714-34554472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
189, 72
               

               
Conread position:
               
47-166
               

               
Cow position:
               
chrX:38728725-38728608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
47-207
               

               
Cow position:
               
chrX:14003654-14003811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
47-247
               

               
Cow position:
               
chrX:2147332-2147128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
47-262
               

               
Cow position:
               
chrX:10959409-10959625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
47-280
               

               
Cow position:
               
chrX:27394035-27394254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
198, 28
               

               
Conread position:
               
48-298
               

               
Cow position:
               
chrX:16762755-16762514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
49-267
               

               
Cow position:
               
chrX:48684239-48684450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
49-281
               

               
Cow position:
               
chrX:38840874-38840647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
196, 53
               

               
Conread position:
               
49-284
               

               
Cow position:
               
chrX:20677356-20677121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
112, 77
               

               
Conread position:
               
50-233
               

               
Cow position:
               
chrX:37541108-37540932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
50-252
               

               
Cow position:
               
chrX:47046522-47046733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
50-268
               

               
Cow position:
               
chrX:2648369-2648578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
50-268
               

               
Cow position:
               
chrX:11746831-11746614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
50-294
               

               
Cow position:
               
chrX:32743519-32743284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
72, 52
               

               
Conread position:
               
50-296
               

               
Cow position:
               
chrX:6414032-6413790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
82, 118
               

               
Conread position:
               
50-297
               

               
Cow position:
               
chrX:9161569-9161331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
50-298
               

               
Cow position:
               
chrX:2467866-2467622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 17
               

               
Conread position:
               
50-298
               

               
Cow position:
               
chrX:30162981-30162739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
50-298
               

               
Cow position:
               
chrX:34454649-34454411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
195, 38
               

               
Conread position:
               
50-298
               

               
Cow position:
               
chrX:40452225-40452471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 75
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chrX:2786574-2786844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
195, 52
               

               
Conread position:
               
51-249
               

               
Cow position:
               
chrX:44063737-44063925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
51-265
               

               
Cow position:
               
chrX:29509458-29509669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 126
               

               
Conread position:
               
51-297
               

               
Cow position:
               
chrX:21064265-21064029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
194, 50
               

               
Conread position:
               
51-298
               

               
Cow position:
               
chrX:33020467-33020228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
51-298
               

               
Cow position:
               
chrX:47344277-47344036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 48
               

               
Conread position:
               
52-298
               

               
Cow position:
               
chrX:37843703-37843462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 16
               

               
Conread position:
               
53-298
               

               
Cow position:
               
chrX:47967582-47967342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
192, 99
               

               
Conread position:
               
54-236
               

               
Cow position:
               
chrX:47484285-47484467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
54-260
               

               
Cow position:
               
chrX:9770696-9770903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
106, 168
               

               
Conread position:
               
54-261
               

               
Cow position:
               
chrX:27174977-27174774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
54-280
               

               
Cow position:
               
chrX:25411821-25411600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
129, 64
               

               
Conread position:
               
54-297
               

               
Cow position:
               
chrX:44834830-44835073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
95, 17
               

               
Conread position:
               
54-298
               

               
Cow position:
               
chrX:38967628-38967392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 72
               

               
Conread position:
               
56-249
               

               
Cow position:
               
chrX:32330136-32329952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
56-325
               

               
Cow position:
               
chrX:11498642-11498910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
52, 60
               

               
Conread position:
               
57-240
               

               
Cow position:
               
chrX:41764623-41764439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
83, 69
               

               
Conread position:
               
57-263
               

               
Cow position:
               
chrX:16541694-16541899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
58-302
               

               
Cow position:
               
chrX:9635209-9635441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
187, 52
               

               
Conread position:
               
60-230
               

               
Cow position:
               
chrX:24149615-24149450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
62-231
               

               
Cow position:
               
chrX:23785635-23785463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
63-314
               

               
Cow position:
               
chrX:35268851-35268618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
181, 19
               

               
Conread position:
               
73-210
               

               
Cow position:
               
chrX:41271246-41271377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
73-251
               

               
Cow position:
               
chrX:16996463-16996297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
76-238
               

               
Cow position:
               
chrX:10252223-10252379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
76-251
               

               
Cow position:
               
chrX:16324006-16324175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
169, 51
               

               
Conread position:
               
76-280
               

               
Cow position:
               
chrX:2206592-2206784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
169, 50
               

               
Conread position:
               
76-290
               

               
Cow position:
               
chrX:35937122-35937322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
169, 24
               

               
Conread position:
               
76-298
               

               
Cow position:
               
chrX:4123796-4123577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
51, 97
               

               
Conread position:
               
76-298
               

               
Cow position:
               
chrX:15596998-15596780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
80-240
               

               
Cow position:
               
chrX:45149135-45148975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
82-301
               

               
Cow position:
               
chrX:23061398-23061193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
84-290
               

               
Cow position:
               
chrX:42855365-42855158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
90-302
               

               
Cow position:
               
chrX:45393170-45393379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
128, 0
               
Show alignments to all cow chromosomes.