Cow genome map
| Conread name: | Pig1-70J06 |
| Conread position: | 246-481 |
| Cow position: | chr15:39418403-39418172 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 252-516 |
| Cow position: | chr15:6226689-6226954 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 254-556 |
| Cow position: | chr15:33681167-33680850 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 256-556 |
| Cow position: | chr15:20369964-20370255 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 23, 117 |
| Conread position: | 257-522 |
| Cow position: | chr15:22161084-22160817 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 93, 59 |
| Conread position: | 257-555 |
| Cow position: | chr15:21695672-21695972 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 93, 33 |
| Conread position: | 257-555 |
| Cow position: | chr15:33625474-33625153 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 262 |
| Conread position: | 257-556 |
| Cow position: | chr15:29003996-29004324 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 257-559 |
| Cow position: | chr15:16112909-16112600 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 22, 122 |
| Conread position: | 257-559 |
| Cow position: | chr15:37039806-37040101 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 24, 5 |
| Conread position: | 257-560 |
| Cow position: | chr15:23775451-23775754 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 225 |
| Conread position: | 258-506 |
| Cow position: | chr15:4970290-4970544 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 258-548 |
| Cow position: | chr15:3497546-3497265 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 33, 134 |
| Conread position: | 258-560 |
| Cow position: | chr15:9642951-9642632 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 96, 27 |
| Conread position: | 259-555 |
| Cow position: | chr15:7962590-7962280 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 260-556 |
| Cow position: | chr15:1831068-1830763 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 90, 15 |
| Conread position: | 261-556 |
| Cow position: | chr15:24976689-24976992 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 87, 145 |
| Conread position: | 262-556 |
| Cow position: | chr15:11958049-11957743 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 267-552 |
| Cow position: | chr15:581963-582250 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 19 |
| Conread position: | 270-505 |
| Cow position: | chr15:1670280-1670515 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 132 |
| Conread position: | 270-554 |
| Cow position: | chr15:9071937-9072225 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 116 |
| Conread position: | 272-556 |
| Cow position: | chr15:26421111-26421397 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 78, 102 |
| Conread position: | 275-511 |
| Cow position: | chr15:53130296-53130055 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 179 |
| Conread position: | 275-555 |
| Cow position: | chr15:21388683-21388965 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 67, 120 |
| Conread position: | 276-487 |
| Cow position: | chr15:5722193-5722407 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 75, 119 |
| Conread position: | 276-556 |
| Cow position: | chr15:4373962-4373673 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 74, 123 |
| Conread position: | 285-554 |
| Cow position: | chr15:13669427-13669699 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 85 |
| Conread position: | 285-554 |
| Cow position: | chr15:15707641-15707907 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 217 |
| Conread position: | 285-554 |
| Cow position: | chr15:24044614-24044895 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 285-554 |
| Cow position: | chr15:26078892-26079160 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 206 |
| Conread position: | 285-554 |
| Cow position: | chr15:52197837-52198104 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 85 |
| Conread position: | 285-558 |
| Cow position: | chr15:29542475-29542196 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 286-507 |
| Cow position: | chr15:10607577-10607800 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 91 |
| Conread position: | 286-511 |
| Cow position: | chr15:14757683-14757917 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 286-517 |
| Cow position: | chr15:33313971-33314200 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 286-519 |
| Cow position: | chr15:5692188-5691953 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 286-552 |
| Cow position: | chr15:20533973-20534239 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 286-553 |
| Cow position: | chr15:19119140-19119399 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 57, 113 |
| Conread position: | 286-554 |
| Cow position: | chr15:1082910-1083172 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 64, 99 |
| Conread position: | 286-554 |
| Cow position: | chr15:8629802-8630081 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 286-554 |
| Cow position: | chr15:30725744-30725470 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 286-555 |
| Cow position: | chr15:16741559-16741838 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 286-555 |
| Cow position: | chr15:22168540-22168261 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 286-555 |
| Cow position: | chr15:53118811-53118524 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 286-556 |
| Cow position: | chr15:9267586-9267856 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 286-556 |
| Cow position: | chr15:16583235-16583504 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 61, 56 |
| Conread position: | 286-556 |
| Cow position: | chr15:24037933-24038199 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 67, 113 |
| Conread position: | 286-556 |
| Cow position: | chr15:25825380-25825659 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 154 |
| Conread position: | 286-556 |
| Cow position: | chr15:33605394-33605124 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 286-556 |
| Cow position: | chr15:43827299-43827572 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 99 |
| Conread position: | 286-557 |
| Cow position: | chr15:2928732-2929005 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 57, 36 |
| Conread position: | 286-557 |
| Cow position: | chr15:15040960-15041233 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 286-557 |
| Cow position: | chr15:18720791-18720511 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 286-557 |
| Cow position: | chr15:18781508-18781779 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 67, 98 |
| Conread position: | 286-557 |
| Cow position: | chr15:19403452-19403182 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 59, 99 |
| Conread position: | 286-557 |
| Cow position: | chr15:31993003-31992727 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 286-557 |
| Cow position: | chr15:38898898-38898622 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 67, 77 |
| Conread position: | 286-557 |
| Cow position: | chr15:42415743-42415459 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 67, 225 |
| Conread position: | 286-558 |
| Cow position: | chr15:50957316-50957597 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 286-559 |
| Cow position: | chr15:31949477-31949195 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 67, 113 |
| Conread position: | 287-522 |
| Cow position: | chr15:21152328-21152090 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 287-554 |
| Cow position: | chr15:6970453-6970186 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 287-555 |
| Cow position: | chr15:52982291-52982017 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 63, 136 |
| Conread position: | 287-557 |
| Cow position: | chr15:21608255-21608523 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 67, 202 |
| Conread position: | 288-554 |
| Cow position: | chr15:26911606-26911875 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 288-556 |
| Cow position: | chr15:5234530-5234802 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 290-519 |
| Cow position: | chr15:13545569-13545339 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 60, 131 |
| Conread position: | 290-556 |
| Cow position: | chr15:12037677-12037399 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 293-553 |
| Cow position: | chr15:23567656-23567916 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 293-554 |
| Cow position: | chr15:41087393-41087662 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 294-558 |
| Cow position: | chr15:4138599-4138333 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 294-561 |
| Cow position: | chr15:22531524-22531257 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 91 |
| Conread position: | 295-557 |
| Cow position: | chr15:25666747-25667022 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 300-557 |
| Cow position: | chr15:53183117-53183376 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 310-557 |
| Cow position: | chr15:49738594-49738844 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 75 |
| Conread position: | 321-556 |
| Cow position: | chr15:22607249-22607011 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 387-560 |
| Cow position: | chr15:45323159-45322984 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 388-558 |
| Cow position: | chr15:23767891-23768063 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 411-556 |
| Cow position: | chr15:10487546-10487698 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 460-561 |
| Cow position: | chr15:11646189-11646292 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 17 |
Show alignments to all cow chromosomes.