Cow genome map
| Conread name: | Pig1-70J06 |
| Conread position: | 248-517 |
| Cow position: | chr17:24293764-24294053 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 258 |
| Conread position: | 248-557 |
| Cow position: | chr17:29292753-29292438 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 252-561 |
| Cow position: | chr17:41029570-41029889 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 253-516 |
| Cow position: | chr17:241963-242230 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 133 |
| Conread position: | 253-558 |
| Cow position: | chr17:32457961-32457649 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 143 |
| Conread position: | 257-554 |
| Cow position: | chr17:25755407-25755714 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 257-556 |
| Cow position: | chr17:2270392-2270684 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 93, 255 |
| Conread position: | 257-556 |
| Cow position: | chr17:3269938-3270243 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 10 |
| Conread position: | 257-556 |
| Cow position: | chr17:18494897-18494588 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 94, 37 |
| Conread position: | 257-556 |
| Cow position: | chr17:27698070-27697773 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 228 |
| Conread position: | 257-558 |
| Cow position: | chr17:5997478-5997161 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 152 |
| Conread position: | 257-558 |
| Cow position: | chr17:13237098-13236794 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 37, 125 |
| Conread position: | 257-560 |
| Cow position: | chr17:15363938-15363629 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 257-560 |
| Cow position: | chr17:26084659-26084966 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 33, 79 |
| Conread position: | 258-554 |
| Cow position: | chr17:26764643-26764943 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 18 |
| Conread position: | 258-560 |
| Cow position: | chr17:5042058-5041745 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 21, 208 |
| Conread position: | 259-518 |
| Cow position: | chr17:1456609-1456346 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 91, 27 |
| Conread position: | 259-555 |
| Cow position: | chr17:23803091-23803385 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 213 |
| Conread position: | 259-556 |
| Cow position: | chr17:25590598-25590307 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 184, 85 |
| Conread position: | 259-556 |
| Cow position: | chr17:34628859-34628553 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 91, 166 |
| Conread position: | 275-554 |
| Cow position: | chr17:15103237-15102958 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 75, 41 |
| Conread position: | 285-506 |
| Cow position: | chr17:38829736-38829959 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 65, 105 |
| Conread position: | 285-531 |
| Cow position: | chr17:40802464-40802715 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 114 |
| Conread position: | 285-551 |
| Cow position: | chr17:3684005-3683733 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 68, 110 |
| Conread position: | 285-552 |
| Cow position: | chr17:11386168-11386437 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 255 |
| Conread position: | 285-553 |
| Cow position: | chr17:3154117-3153843 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 65, 92 |
| Conread position: | 285-554 |
| Cow position: | chr17:18592089-18592370 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 285-554 |
| Cow position: | chr17:25542160-25541887 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 285-554 |
| Cow position: | chr17:27667542-27667262 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 285-554 |
| Cow position: | chr17:29715534-29715260 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 285-554 |
| Cow position: | chr17:32989145-32989408 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 65, 215 |
| Conread position: | 285-554 |
| Cow position: | chr17:32993961-32993692 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 65, 216 |
| Conread position: | 285-554 |
| Cow position: | chr17:36331310-36331039 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 118, 68 |
| Conread position: | 285-554 |
| Cow position: | chr17:40405959-40406234 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 100 |
| Conread position: | 286-472 |
| Cow position: | chr17:4123098-4122914 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 156, 7 |
| Conread position: | 286-522 |
| Cow position: | chr17:26514368-26514607 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 67, 136 |
| Conread position: | 286-522 |
| Cow position: | chr17:26532524-26532757 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 123, 58 |
| Conread position: | 286-550 |
| Cow position: | chr17:22057521-22057251 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 286-553 |
| Cow position: | chr17:23337361-23337091 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 67, 91 |
| Conread position: | 286-553 |
| Cow position: | chr17:33289001-33288729 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 286-554 |
| Cow position: | chr17:20269265-20269528 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 64, 157 |
| Conread position: | 286-554 |
| Cow position: | chr17:23101554-23101280 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 59, 99 |
| Conread position: | 286-554 |
| Cow position: | chr17:30539596-30539326 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 286-554 |
| Cow position: | chr17:43717655-43717388 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 151 |
| Conread position: | 286-555 |
| Cow position: | chr17:18861065-18860796 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 286-556 |
| Cow position: | chr17:4213410-4213690 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 286-556 |
| Cow position: | chr17:5748147-5747865 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 286-556 |
| Cow position: | chr17:5896259-5895982 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 286-556 |
| Cow position: | chr17:9853639-9853918 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 286-557 |
| Cow position: | chr17:8690799-8690513 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 52 |
| Conread position: | 286-557 |
| Cow position: | chr17:20800470-20800745 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 286-557 |
| Cow position: | chr17:21495030-21495304 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 64, 174 |
| Conread position: | 286-557 |
| Cow position: | chr17:21960025-21959758 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 84 |
| Conread position: | 286-557 |
| Cow position: | chr17:28539696-28539958 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 94 |
| Conread position: | 286-557 |
| Cow position: | chr17:30664928-30665199 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 32, 107 |
| Conread position: | 286-557 |
| Cow position: | chr17:31232287-31232002 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 286-558 |
| Cow position: | chr17:15300211-15299946 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 66, 101 |
| Conread position: | 286-558 |
| Cow position: | chr17:32651269-32651546 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 113 |
| Conread position: | 286-561 |
| Cow position: | chr17:34317064-34316772 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 287-553 |
| Cow position: | chr17:32365940-32366213 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 163 |
| Conread position: | 287-556 |
| Cow position: | chr17:31798457-31798746 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 288-555 |
| Cow position: | chr17:27305818-27306085 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 86 |
| Conread position: | 288-557 |
| Cow position: | chr17:26771699-26771428 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 211 |
| Conread position: | 289-519 |
| Cow position: | chr17:21973475-21973244 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 61, 110 |
| Conread position: | 289-556 |
| Cow position: | chr17:20653245-20652965 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 186 |
| Conread position: | 291-555 |
| Cow position: | chr17:10271159-10271422 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 143 |
| Conread position: | 292-557 |
| Cow position: | chr17:6566138-6566396 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 293-554 |
| Cow position: | chr17:8644697-8644966 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 54, 50 |
| Conread position: | 293-558 |
| Cow position: | chr17:27978817-27979104 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 115 |
| Conread position: | 294-558 |
| Cow position: | chr17:15893565-15893835 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 57, 105 |
| Conread position: | 294-558 |
| Cow position: | chr17:24077066-24077332 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 5, 106 |
| Conread position: | 299-556 |
| Cow position: | chr17:8214574-8214855 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 203 |
| Conread position: | 300-521 |
| Cow position: | chr17:25145643-25145413 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 376-554 |
| Cow position: | chr17:32456637-32456461 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 73, 15 |
| Conread position: | 376-561 |
| Cow position: | chr17:21313054-21312876 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 385-561 |
| Cow position: | chr17:30999529-30999707 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 388-556 |
| Cow position: | chr17:7423685-7423513 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 404-557 |
| Cow position: | chr17:12216305-12216144 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 410-558 |
| Cow position: | chr17:12054498-12054649 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.