Cow genome map
| Conread name: | Pig1-70J06 |
| Conread position: | 90-236 |
| Cow position: | chr18:32517380-32517236 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 126, 42 |
| Conread position: | 240-487 |
| Cow position: | chr18:49227227-49227476 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 14, 52 |
| Conread position: | 240-555 |
| Cow position: | chr18:19123710-19124033 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 252-522 |
| Cow position: | chr18:52595947-52596207 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 97, 23 |
| Conread position: | 257-522 |
| Cow position: | chr18:40203239-40202980 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 93, 17 |
| Conread position: | 257-554 |
| Cow position: | chr18:24293408-24293703 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 109 |
| Conread position: | 257-555 |
| Cow position: | chr18:32908453-32908749 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 257-556 |
| Cow position: | chr18:6290335-6290642 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 24, 64 |
| Conread position: | 257-556 |
| Cow position: | chr18:32280848-32281150 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 131 |
| Conread position: | 257-556 |
| Cow position: | chr18:32860199-32860499 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 24, 82 |
| Conread position: | 257-558 |
| Cow position: | chr18:39709446-39709748 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 26 |
| Conread position: | 257-559 |
| Cow position: | chr18:33793254-33793562 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 37, 259 |
| Conread position: | 257-559 |
| Cow position: | chr18:36458484-36458789 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 33, 134 |
| Conread position: | 258-558 |
| Cow position: | chr18:31672950-31672657 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 258-558 |
| Cow position: | chr18:42747138-42747450 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 18, 233 |
| Conread position: | 259-556 |
| Cow position: | chr18:54084991-54084688 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 287 |
| Conread position: | 275-554 |
| Cow position: | chr18:7076337-7076622 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 68, 92 |
| Conread position: | 277-560 |
| Cow position: | chr18:16134737-16134448 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 281-557 |
| Cow position: | chr18:50927312-50927591 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 285-517 |
| Cow position: | chr18:7964810-7965045 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 114 |
| Conread position: | 285-550 |
| Cow position: | chr18:4540293-4540030 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 167 |
| Conread position: | 285-553 |
| Cow position: | chr18:13293088-13293362 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 285-553 |
| Cow position: | chr18:28101205-28101483 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 285-554 |
| Cow position: | chr18:81342-81610 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 153, 66 |
| Conread position: | 285-554 |
| Cow position: | chr18:47183706-47183430 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 244 |
| Conread position: | 286-503 |
| Cow position: | chr18:23658979-23658758 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 286-513 |
| Cow position: | chr18:12585559-12585330 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 64, 8 |
| Conread position: | 286-517 |
| Cow position: | chr18:20329228-20328995 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 58 |
| Conread position: | 286-518 |
| Cow position: | chr18:43950420-43950657 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 286-522 |
| Cow position: | chr18:51191172-51190936 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 86 |
| Conread position: | 286-522 |
| Cow position: | chr18:51691888-51691649 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 286-525 |
| Cow position: | chr18:19193765-19193530 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 92 |
| Conread position: | 286-537 |
| Cow position: | chr18:4556806-4556553 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 29, 231 |
| Conread position: | 286-537 |
| Cow position: | chr18:35636766-35636515 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 286-553 |
| Cow position: | chr18:7486833-7487110 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 286-554 |
| Cow position: | chr18:7649572-7649850 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 212 |
| Conread position: | 286-554 |
| Cow position: | chr18:39002215-39001950 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 67, 196 |
| Conread position: | 286-554 |
| Cow position: | chr18:51443848-51443580 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 117 |
| Conread position: | 286-555 |
| Cow position: | chr18:4315880-4316164 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 64, 8 |
| Conread position: | 286-555 |
| Cow position: | chr18:10574634-10574906 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 68, 7 |
| Conread position: | 286-556 |
| Cow position: | chr18:25003296-25003026 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 65, 6 |
| Conread position: | 286-556 |
| Cow position: | chr18:33606211-33606483 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 286-556 |
| Cow position: | chr18:37023976-37023698 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 286-556 |
| Cow position: | chr18:40758792-40759069 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 58, 96 |
| Conread position: | 286-557 |
| Cow position: | chr18:28539807-28539533 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 67, 175 |
| Conread position: | 286-558 |
| Cow position: | chr18:34621784-34621506 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 64, 105 |
| Conread position: | 286-558 |
| Cow position: | chr18:52635501-52635228 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 123 |
| Conread position: | 286-559 |
| Cow position: | chr18:25626604-25626886 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 286-559 |
| Cow position: | chr18:55589894-55589621 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 100, 112 |
| Conread position: | 286-560 |
| Cow position: | chr18:601590-601319 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 92 |
| Conread position: | 286-560 |
| Cow position: | chr18:55697435-55697155 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 286-561 |
| Cow position: | chr18:49655296-49655567 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 67, 77 |
| Conread position: | 287-553 |
| Cow position: | chr18:19850165-19849904 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 8, 114 |
| Conread position: | 287-554 |
| Cow position: | chr18:9089287-9089552 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 62, 131 |
| Conread position: | 287-561 |
| Cow position: | chr18:19159382-19159110 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 293-497 |
| Cow position: | chr18:30360533-30360326 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 106 |
| Conread position: | 294-554 |
| Cow position: | chr18:10656035-10656298 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 48, 104 |
| Conread position: | 299-554 |
| Cow position: | chr18:21195746-21195485 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 309-561 |
| Cow position: | chr18:26286517-26286771 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 396-552 |
| Cow position: | chr18:25647558-25647401 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 414-552 |
| Cow position: | chr18:19387289-19387432 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 415-555 |
| Cow position: | chr18:23476960-23476822 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 423-558 |
| Cow position: | chr18:21203541-21203402 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.