Cow genome map
| Conread name: | Pig1-70J06 |
| Conread position: | 252-553 |
| Cow position: | chr21:47823625-47823327 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 98, 126 |
| Conread position: | 252-556 |
| Cow position: | chr21:8289996-8289686 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 98, 16 |
| Conread position: | 252-557 |
| Cow position: | chr21:13395198-13395503 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 257-522 |
| Cow position: | chr21:9201839-9202101 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 257-561 |
| Cow position: | chr21:39401247-39401551 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 93, 188 |
| Conread position: | 261-555 |
| Cow position: | chr21:23449232-23449525 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 179, 84 |
| Conread position: | 267-557 |
| Cow position: | chr21:37942025-37941731 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 111 |
| Conread position: | 276-531 |
| Cow position: | chr21:37122387-37122123 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 74, 114 |
| Conread position: | 285-517 |
| Cow position: | chr21:24857986-24858221 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 285-517 |
| Cow position: | chr21:30250530-30250299 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 76 |
| Conread position: | 285-522 |
| Cow position: | chr21:5392863-5392628 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 104 |
| Conread position: | 285-548 |
| Cow position: | chr21:38120778-38121044 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 58, 234 |
| Conread position: | 285-552 |
| Cow position: | chr21:29214480-29214204 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 106 |
| Conread position: | 285-553 |
| Cow position: | chr21:4794896-4795175 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 111 |
| Conread position: | 285-553 |
| Cow position: | chr21:16612304-16612573 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 226 |
| Conread position: | 285-554 |
| Cow position: | chr21:24130761-24131029 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 118, 59 |
| Conread position: | 285-554 |
| Cow position: | chr21:29069653-29069380 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 65, 114 |
| Conread position: | 285-554 |
| Cow position: | chr21:30990593-30990321 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 65, 114 |
| Conread position: | 285-554 |
| Cow position: | chr21:32297827-32297558 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 160 |
| Conread position: | 285-554 |
| Cow position: | chr21:33209874-33210151 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 65, 117 |
| Conread position: | 285-554 |
| Cow position: | chr21:33263526-33263798 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 92 |
| Conread position: | 285-554 |
| Cow position: | chr21:37479634-37479908 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 100 |
| Conread position: | 285-557 |
| Cow position: | chr21:17282378-17282655 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 285-557 |
| Cow position: | chr21:24796359-24796087 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 68, 101 |
| Conread position: | 285-561 |
| Cow position: | chr21:33983135-33982849 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 286-510 |
| Cow position: | chr21:40244110-40244338 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 286-516 |
| Cow position: | chr21:39061524-39061758 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 286-519 |
| Cow position: | chr21:16696046-16696280 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 175 |
| Conread position: | 286-519 |
| Cow position: | chr21:28429126-28429361 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 97 |
| Conread position: | 286-519 |
| Cow position: | chr21:36909498-36909739 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 286-540 |
| Cow position: | chr21:40265509-40265767 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 286-552 |
| Cow position: | chr21:33420040-33419777 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 88 |
| Conread position: | 286-553 |
| Cow position: | chr21:34391290-34391027 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 286-554 |
| Cow position: | chr21:393697-393974 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 67, 113 |
| Conread position: | 286-554 |
| Cow position: | chr21:7582229-7581957 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 64, 138 |
| Conread position: | 286-554 |
| Cow position: | chr21:12616818-12617086 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 68, 119 |
| Conread position: | 286-554 |
| Cow position: | chr21:20262658-20262384 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 286-554 |
| Cow position: | chr21:21216465-21216192 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 286-555 |
| Cow position: | chr21:37706740-37706465 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 87, 7 |
| Conread position: | 286-556 |
| Cow position: | chr21:4998809-4998535 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 286-556 |
| Cow position: | chr21:22719103-22718828 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 286-556 |
| Cow position: | chr21:24222865-24222587 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 189 |
| Conread position: | 286-556 |
| Cow position: | chr21:28993951-28993671 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 286-556 |
| Cow position: | chr21:34658712-34658982 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 286-557 |
| Cow position: | chr21:2420182-2420452 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 286-557 |
| Cow position: | chr21:8985225-8985498 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 57, 113 |
| Conread position: | 286-557 |
| Cow position: | chr21:16909731-16910013 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 169 |
| Conread position: | 286-557 |
| Cow position: | chr21:19766531-19766806 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 286-557 |
| Cow position: | chr21:28477301-28477575 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 67, 149 |
| Conread position: | 286-557 |
| Cow position: | chr21:31576190-31576462 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 64, 99 |
| Conread position: | 286-558 |
| Cow position: | chr21:641263-641536 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 45 |
| Conread position: | 286-558 |
| Cow position: | chr21:4399476-4399750 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 113 |
| Conread position: | 286-558 |
| Cow position: | chr21:5455310-5455040 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 65, 163 |
| Conread position: | 286-558 |
| Cow position: | chr21:5595341-5595615 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 286-558 |
| Cow position: | chr21:13300828-13301104 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 113 |
| Conread position: | 286-558 |
| Cow position: | chr21:24864831-24865113 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 286-558 |
| Cow position: | chr21:27743417-27743696 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 66, 188 |
| Conread position: | 286-558 |
| Cow position: | chr21:42500712-42500990 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 286-559 |
| Cow position: | chr21:12153809-12154091 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 286-559 |
| Cow position: | chr21:31158931-31159215 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 286-560 |
| Cow position: | chr21:24297087-24296816 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 133 |
| Conread position: | 287-522 |
| Cow position: | chr21:31436023-31436262 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 66, 107 |
| Conread position: | 288-553 |
| Cow position: | chr21:7672811-7673074 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 90 |
| Conread position: | 288-557 |
| Cow position: | chr21:3236210-3236476 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 65, 111 |
| Conread position: | 288-558 |
| Cow position: | chr21:30626504-30626229 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 62, 5 |
| Conread position: | 293-522 |
| Cow position: | chr21:31691164-31691393 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 57, 102 |
| Conread position: | 299-558 |
| Cow position: | chr21:37352729-37352470 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 55, 81 |
| Conread position: | 300-556 |
| Cow position: | chr21:31702266-31702005 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 99 |
| Conread position: | 305-554 |
| Cow position: | chr21:23683245-23683497 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 197 |
| Conread position: | 308-558 |
| Cow position: | chr21:23500123-23499871 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 45, 83 |
| Conread position: | 392-558 |
| Cow position: | chr21:14464360-14464532 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 392-561 |
| Cow position: | chr21:21000243-21000074 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 53, 92 |
| Conread position: | 406-554 |
| Cow position: | chr21:22860799-22860948 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 415-556 |
| Cow position: | chr21:24714459-24714603 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 418-556 |
| Cow position: | chr21:35996981-35997124 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.