Cow genome map
| Conread name: | Pig1-70J06 |
| Conread position: | 228-556 |
| Cow position: | chr25:37469324-37469659 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 225 |
| Conread position: | 252-558 |
| Cow position: | chr25:20496116-20496422 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 257-519 |
| Cow position: | chr25:13553491-13553758 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 257-522 |
| Cow position: | chr25:16691087-16691365 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 93, 29 |
| Conread position: | 257-537 |
| Cow position: | chr25:20394785-20395066 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 20, 145 |
| Conread position: | 257-553 |
| Cow position: | chr25:32899225-32898918 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 64 |
| Conread position: | 257-555 |
| Cow position: | chr25:14225216-14224919 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 257-556 |
| Cow position: | chr25:10012469-10012163 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 257-556 |
| Cow position: | chr25:17659811-17660119 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 96, 111 |
| Conread position: | 257-558 |
| Cow position: | chr25:13569587-13569286 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 271 |
| Conread position: | 257-561 |
| Cow position: | chr25:1735730-1735422 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 88 |
| Conread position: | 257-561 |
| Cow position: | chr25:18448415-18448731 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 140 |
| Conread position: | 258-561 |
| Cow position: | chr25:20076079-20076384 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 19, 70 |
| Conread position: | 276-552 |
| Cow position: | chr25:5341251-5341534 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 74, 267 |
| Conread position: | 285-494 |
| Cow position: | chr25:17191521-17191310 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 65, 114 |
| Conread position: | 285-513 |
| Cow position: | chr25:4522208-4521984 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 58, 194 |
| Conread position: | 285-517 |
| Cow position: | chr25:7800745-7800980 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 285-522 |
| Cow position: | chr25:8120386-8120625 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 285-552 |
| Cow position: | chr25:4488345-4488610 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 102 |
| Conread position: | 285-554 |
| Cow position: | chr25:787882-788148 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 64, 53 |
| Conread position: | 285-554 |
| Cow position: | chr25:11437193-11436923 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 65, 114 |
| Conread position: | 285-554 |
| Cow position: | chr25:21193334-21193057 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 65, 109 |
| Conread position: | 285-554 |
| Cow position: | chr25:22314810-22315086 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 285-554 |
| Cow position: | chr25:30279599-30279321 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 65, 114 |
| Conread position: | 286-507 |
| Cow position: | chr25:36871469-36871693 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 286-511 |
| Cow position: | chr25:20069337-20069558 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 286-517 |
| Cow position: | chr25:8482703-8482469 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 91 |
| Conread position: | 286-517 |
| Cow position: | chr25:14274051-14274284 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 286-522 |
| Cow position: | chr25:10407808-10407569 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 286-551 |
| Cow position: | chr25:38569984-38569718 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 57, 99 |
| Conread position: | 286-554 |
| Cow position: | chr25:16866847-16867116 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 78 |
| Conread position: | 286-555 |
| Cow position: | chr25:11956437-11956713 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 286-556 |
| Cow position: | chr25:12235143-12234873 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 45 |
| Conread position: | 286-556 |
| Cow position: | chr25:16430412-16430147 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 91 |
| Conread position: | 286-556 |
| Cow position: | chr25:23410275-23410548 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 64, 92 |
| Conread position: | 286-556 |
| Cow position: | chr25:24136833-24136551 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 67, 173 |
| Conread position: | 286-557 |
| Cow position: | chr25:16922183-16921904 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 286-557 |
| Cow position: | chr25:17658225-17658499 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 68, 192 |
| Conread position: | 286-558 |
| Cow position: | chr25:13720930-13720652 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 66, 198 |
| Conread position: | 286-558 |
| Cow position: | chr25:18294704-18294430 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 286-558 |
| Cow position: | chr25:24227730-24227446 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 108 |
| Conread position: | 286-558 |
| Cow position: | chr25:26087126-26087406 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 286-559 |
| Cow position: | chr25:15005816-15006085 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 99 |
| Conread position: | 286-559 |
| Cow position: | chr25:24727175-24726895 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 120, 112 |
| Conread position: | 287-495 |
| Cow position: | chr25:23571367-23571153 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 67, 93 |
| Conread position: | 288-501 |
| Cow position: | chr25:9634543-9634747 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 157, 45 |
| Conread position: | 288-554 |
| Cow position: | chr25:14791368-14791637 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 97 |
| Conread position: | 288-559 |
| Cow position: | chr25:12204081-12204356 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 293-554 |
| Cow position: | chr25:32191286-32191554 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 57, 173 |
| Conread position: | 293-557 |
| Cow position: | chr25:23389655-23389394 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 92 |
| Conread position: | 299-557 |
| Cow position: | chr25:26911133-26910872 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 317-561 |
| Cow position: | chr25:40957345-40957097 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 169 |
| Conread position: | 383-561 |
| Cow position: | chr25:38135461-38135638 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 133, 33 |
| Conread position: | 384-559 |
| Cow position: | chr25:35344747-35344926 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 395-559 |
| Cow position: | chr25:40407749-40407584 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 133, 108 |
Show alignments to all cow chromosomes.