Cow genome map
| Conread name: | Pig1-70J06 |
| Conread position: | 96-218 |
| Cow position: | chr28:13255858-13255740 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 250-558 |
| Cow position: | chr28:25314763-25315092 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 252-555 |
| Cow position: | chr28:10642433-10642126 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 134 |
| Conread position: | 252-556 |
| Cow position: | chr28:28590320-28590631 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 121, 31 |
| Conread position: | 257-553 |
| Cow position: | chr28:12998465-12998766 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 223 |
| Conread position: | 257-556 |
| Cow position: | chr28:34150946-34150635 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 257-561 |
| Cow position: | chr28:18139867-18139554 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 257-561 |
| Cow position: | chr28:20264965-20265287 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 86, 194 |
| Conread position: | 258-558 |
| Cow position: | chr28:30994873-30995174 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 91, 137 |
| Conread position: | 259-555 |
| Cow position: | chr28:31972159-31971864 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 84, 26 |
| Conread position: | 276-557 |
| Cow position: | chr28:15590608-15590881 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 164, 49 |
| Conread position: | 279-517 |
| Cow position: | chr28:4587708-4587947 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 282-548 |
| Cow position: | chr28:3750925-3751202 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 285-517 |
| Cow position: | chr28:14997681-14997913 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 285-540 |
| Cow position: | chr28:10977481-10977743 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 285-554 |
| Cow position: | chr28:3914327-3914602 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 70, 114 |
| Conread position: | 285-554 |
| Cow position: | chr28:4070582-4070860 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 285-554 |
| Cow position: | chr28:8022494-8022218 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 222 |
| Conread position: | 285-554 |
| Cow position: | chr28:11585590-11585314 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 78 |
| Conread position: | 285-554 |
| Cow position: | chr28:16346899-16346636 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 64, 93 |
| Conread position: | 285-554 |
| Cow position: | chr28:20124406-20124674 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 65, 93 |
| Conread position: | 285-554 |
| Cow position: | chr28:21844573-21844850 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 65, 123 |
| Conread position: | 285-554 |
| Cow position: | chr28:26614512-26614775 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 34 |
| Conread position: | 285-557 |
| Cow position: | chr28:12430223-12430501 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 142 |
| Conread position: | 286-515 |
| Cow position: | chr28:10616332-10616102 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 286-517 |
| Cow position: | chr28:12457774-12458008 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 286-519 |
| Cow position: | chr28:16246647-16246417 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 286-519 |
| Cow position: | chr28:16925593-16925357 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 286-521 |
| Cow position: | chr28:22322883-22323121 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 286-551 |
| Cow position: | chr28:7882423-7882698 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 286-553 |
| Cow position: | chr28:25056588-25056860 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 286-554 |
| Cow position: | chr28:5930969-5931243 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 91, 48 |
| Conread position: | 286-554 |
| Cow position: | chr28:21598635-21598363 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 286-555 |
| Cow position: | chr28:7268315-7268044 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 286-555 |
| Cow position: | chr28:7697377-7697111 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 286-555 |
| Cow position: | chr28:11924202-11923921 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 286-555 |
| Cow position: | chr28:25726999-25727269 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 64, 109 |
| Conread position: | 286-555 |
| Cow position: | chr28:29074152-29073860 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 64, 160 |
| Conread position: | 286-556 |
| Cow position: | chr28:13693367-13693643 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 64, 200 |
| Conread position: | 286-556 |
| Cow position: | chr28:14657315-14657593 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 286-556 |
| Cow position: | chr28:15677512-15677786 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 286-556 |
| Cow position: | chr28:30977904-30978170 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 286-557 |
| Cow position: | chr28:4282874-4282596 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 68, 133 |
| Conread position: | 286-557 |
| Cow position: | chr28:7685058-7684785 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 286-557 |
| Cow position: | chr28:11451856-11451570 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 64, 8 |
| Conread position: | 286-557 |
| Cow position: | chr28:15375204-15374928 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 99 |
| Conread position: | 286-559 |
| Cow position: | chr28:10900439-10900713 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 286-559 |
| Cow position: | chr28:22171112-22170822 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 286-560 |
| Cow position: | chr28:25563696-25563977 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 115 |
| Conread position: | 286-561 |
| Cow position: | chr28:21354842-21355122 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 64, 260 |
| Conread position: | 287-522 |
| Cow position: | chr28:11733506-11733268 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 287-522 |
| Cow position: | chr28:16215272-16215036 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 287-558 |
| Cow position: | chr28:15272639-15272366 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 287-558 |
| Cow position: | chr28:30293968-30293696 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 66, 98 |
| Conread position: | 287-561 |
| Cow position: | chr28:21873368-21873668 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 288-506 |
| Cow position: | chr28:23839832-23840049 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 62, 107 |
| Conread position: | 288-558 |
| Cow position: | chr28:3479885-3480164 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 288-559 |
| Cow position: | chr28:10611953-10611677 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 91 |
| Conread position: | 293-519 |
| Cow position: | chr28:25128358-25128131 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 57, 222 |
| Conread position: | 293-522 |
| Cow position: | chr28:4058352-4058581 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 57, 98 |
| Conread position: | 293-522 |
| Cow position: | chr28:14742425-14742657 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 293-552 |
| Cow position: | chr28:3740477-3740734 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 56, 106 |
| Conread position: | 294-517 |
| Cow position: | chr28:9267726-9267952 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 294-554 |
| Cow position: | chr28:8372097-8372365 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 101 |
| Conread position: | 294-560 |
| Cow position: | chr28:18790638-18790910 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 295-556 |
| Cow position: | chr28:2814871-2814607 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 310-554 |
| Cow position: | chr28:16686677-16686921 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 334-554 |
| Cow position: | chr28:12938668-12938891 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 16, 54 |
| Conread position: | 334-557 |
| Cow position: | chr28:23231399-23231173 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 65 |
| Conread position: | 376-556 |
| Cow position: | chr28:3769942-3769769 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 376-557 |
| Cow position: | chr28:13176969-13176781 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 392-554 |
| Cow position: | chr28:19026278-19026121 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 94 |
| Conread position: | 392-558 |
| Cow position: | chr28:26701587-26701425 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 406-561 |
| Cow position: | chr28:9390626-9390465 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 413-556 |
| Cow position: | chr28:17153528-17153671 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 96, 31 |
Show alignments to all cow chromosomes.