Cow genome map
| Conread name: | Pig1-70J06 | 
| Conread position: | 252-554 | 
| Cow position: | chr3:40344954-40345266 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 29, 123 | 
| Conread position: | 252-556 | 
| Cow position: | chr3:15079515-15079204 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 107 | 
| Conread position: | 252-556 | 
| Cow position: | chr3:59608062-59608371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 29, 150 | 
| Conread position: | 252-558 | 
| Cow position: | chr3:65968715-65969024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 27, 64 | 
| Conread position: | 257-483 | 
| Cow position: | chr3:17899383-17899609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 11, 49 | 
| Conread position: | 257-495 | 
| Cow position: | chr3:69448136-69447896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 91, 142 | 
| Conread position: | 257-503 | 
| Cow position: | chr3:18758678-18758428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 24, 160 | 
| Conread position: | 257-522 | 
| Cow position: | chr3:66649885-66649614 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 257-552 | 
| Cow position: | chr3:9843139-9843447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 86, 34 | 
| Conread position: | 257-554 | 
| Cow position: | chr3:74849479-74849177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 19, 0 | 
| Conread position: | 257-556 | 
| Cow position: | chr3:16115133-16115429 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 24, 123 | 
| Conread position: | 257-556 | 
| Cow position: | chr3:19109298-19109600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 24, 190 | 
| Conread position: | 257-556 | 
| Cow position: | chr3:36174516-36174206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 92, 0 | 
| Conread position: | 257-556 | 
| Cow position: | chr3:68342695-68342390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 88, 128 | 
| Conread position: | 257-557 | 
| Cow position: | chr3:14717373-14717675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 22, 143 | 
| Conread position: | 257-557 | 
| Cow position: | chr3:67044534-67044232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 31, 128 | 
| Conread position: | 257-557 | 
| Cow position: | chr3:70130259-70129943 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 96, 34 | 
| Conread position: | 257-558 | 
| Cow position: | chr3:1498432-1498740 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 24, 120 | 
| Conread position: | 257-558 | 
| Cow position: | chr3:24823534-24823844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 36, 124 | 
| Conread position: | 257-558 | 
| Cow position: | chr3:47284401-47284701 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 98, 35 | 
| Conread position: | 257-558 | 
| Cow position: | chr3:53903748-53904052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 19, 109 | 
| Conread position: | 257-561 | 
| Cow position: | chr3:66738331-66738646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 20, 123 | 
| Conread position: | 257-561 | 
| Cow position: | chr3:77226881-77227192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 34, 131 | 
| Conread position: | 258-490 | 
| Cow position: | chr3:49132689-49132459 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 21, 116 | 
| Conread position: | 258-552 | 
| Cow position: | chr3:64536983-64536687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 20, 194 | 
| Conread position: | 258-559 | 
| Cow position: | chr3:20471804-20471495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 23, 52 | 
| Conread position: | 259-522 | 
| Cow position: | chr3:42603389-42603659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 259-557 | 
| Cow position: | chr3:14626589-14626293 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 28, 141 | 
| Conread position: | 260-517 | 
| Cow position: | chr3:54346660-54346404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 32, 45 | 
| Conread position: | 260-556 | 
| Cow position: | chr3:24531400-24531696 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 31, 122 | 
| Conread position: | 266-560 | 
| Cow position: | chr3:6880503-6880785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 53, 134 | 
| Conread position: | 267-561 | 
| Cow position: | chr3:38497514-38497816 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 83, 264 | 
| Conread position: | 267-561 | 
| Cow position: | chr3:51147094-51146793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 133, 116 | 
| Conread position: | 269-555 | 
| Cow position: | chr3:80655034-80655320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 74, 116 | 
| Conread position: | 273-555 | 
| Cow position: | chr3:26669526-26669240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 80, 142 | 
| Conread position: | 275-550 | 
| Cow position: | chr3:61678265-61678547 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 18, 256 | 
| Conread position: | 275-557 | 
| Cow position: | chr3:30359057-30358771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 18, 67 | 
| Conread position: | 276-554 | 
| Cow position: | chr3:16004402-16004128 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 69, 13 | 
| Conread position: | 277-556 | 
| Cow position: | chr3:51255356-51255651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 77, 30 | 
| Conread position: | 278-556 | 
| Cow position: | chr3:27453806-27453534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 72, 90 | 
| Conread position: | 285-519 | 
| Cow position: | chr3:76155304-76155536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 65, 85 | 
| Conread position: | 285-522 | 
| Cow position: | chr3:26219473-26219234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 64, 100 | 
| Conread position: | 285-554 | 
| Cow position: | chr3:17937263-17936973 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 65, 210 | 
| Conread position: | 285-554 | 
| Cow position: | chr3:21302843-21302569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 65, 96 | 
| Conread position: | 285-554 | 
| Cow position: | chr3:29887836-29887560 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 65, 214 | 
| Conread position: | 285-554 | 
| Cow position: | chr3:50768263-50768544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 65, 0 | 
| Conread position: | 285-554 | 
| Cow position: | chr3:70566150-70565876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 58, 114 | 
| Conread position: | 286-513 | 
| Cow position: | chr3:62624044-62623816 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 57, 113 | 
| Conread position: | 286-519 | 
| Cow position: | chr3:3031990-3032220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 67, 99 | 
| Conread position: | 286-519 | 
| Cow position: | chr3:55110254-55110019 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 286-522 | 
| Cow position: | chr3:14724887-14725125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 67, 76 | 
| Conread position: | 286-522 | 
| Cow position: | chr3:21341374-21341138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 57, 144 | 
| Conread position: | 286-522 | 
| Cow position: | chr3:65273809-65273573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 67, 112 | 
| Conread position: | 286-523 | 
| Cow position: | chr3:15955133-15955374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 67, 0 | 
| Conread position: | 286-550 | 
| Cow position: | chr3:4461899-4461633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 67, 94 | 
| Conread position: | 286-552 | 
| Cow position: | chr3:69962121-69961854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 62, 114 | 
| Conread position: | 286-554 | 
| Cow position: | chr3:12671106-12670832 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 58, 122 | 
| Conread position: | 286-554 | 
| Cow position: | chr3:26903706-26903977 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 57, 99 | 
| Conread position: | 286-554 | 
| Cow position: | chr3:66610249-66609981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 59, 224 | 
| Conread position: | 286-555 | 
| Cow position: | chr3:48370720-48370998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 38, 33 | 
| Conread position: | 286-555 | 
| Cow position: | chr3:58540949-58540666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 62, 7 | 
| Conread position: | 286-556 | 
| Cow position: | chr3:49218719-49218450 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 9, 191 | 
| Conread position: | 286-556 | 
| Cow position: | chr3:58350168-58350450 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 64, 71 | 
| Conread position: | 286-557 | 
| Cow position: | chr3:2674618-2674892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 67, 258 | 
| Conread position: | 286-557 | 
| Cow position: | chr3:15387794-15388080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 65, 0 | 
| Conread position: | 286-557 | 
| Cow position: | chr3:28675578-28675854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 67, 99 | 
| Conread position: | 286-557 | 
| Cow position: | chr3:30179674-30179945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 67, 8 | 
| Conread position: | 286-557 | 
| Cow position: | chr3:43528648-43528372 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 64, 92 | 
| Conread position: | 286-557 | 
| Cow position: | chr3:50762709-50762993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 66, 0 | 
| Conread position: | 286-557 | 
| Cow position: | chr3:58951210-58951486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 67, 0 | 
| Conread position: | 286-558 | 
| Cow position: | chr3:8148074-8147803 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 14, 100 | 
| Conread position: | 286-558 | 
| Cow position: | chr3:12255069-12255344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 65, 108 | 
| Conread position: | 286-558 | 
| Cow position: | chr3:48530228-48530503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 57, 10 | 
| Conread position: | 286-558 | 
| Cow position: | chr3:51032934-51033212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 66, 107 | 
| Conread position: | 286-558 | 
| Cow position: | chr3:72390672-72390948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 67, 151 | 
| Conread position: | 286-559 | 
| Cow position: | chr3:3776623-3776905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 67, 0 | 
| Conread position: | 286-560 | 
| Cow position: | chr3:63703791-63704055 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 64, 113 | 
| Conread position: | 286-561 | 
| Cow position: | chr3:2506890-2506606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 63, 146 | 
| Conread position: | 286-561 | 
| Cow position: | chr3:50614234-50614507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 57, 113 | 
| Conread position: | 287-550 | 
| Cow position: | chr3:22353734-22354012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 55, 0 | 
| Conread position: | 287-557 | 
| Cow position: | chr3:20663948-20663669 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 66, 112 | 
| Conread position: | 287-557 | 
| Cow position: | chr3:46341054-46341329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 66, 6 | 
| Conread position: | 287-557 | 
| Cow position: | chr3:77188039-77188302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 64, 98 | 
| Conread position: | 287-559 | 
| Cow position: | chr3:16157275-16157551 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 66, 98 | 
| Conread position: | 288-531 | 
| Cow position: | chr3:30700908-30701161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 55, 119 | 
| Conread position: | 288-557 | 
| Cow position: | chr3:70913490-70913214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 108, 57 | 
| Conread position: | 288-558 | 
| Cow position: | chr3:1133501-1133234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 62, 90 | 
| Conread position: | 290-556 | 
| Cow position: | chr3:53538111-53538392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 60, 75 | 
| Conread position: | 293-522 | 
| Cow position: | chr3:11447598-11447825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 144, 105 | 
| Conread position: | 299-557 | 
| Cow position: | chr3:24852985-24852718 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 300-557 | 
| Cow position: | chr3:19708494-19708240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 54, 80 | 
| Conread position: | 301-558 | 
| Cow position: | chr3:13899850-13899583 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 311-557 | 
| Cow position: | chr3:31771310-31771561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 22, 92 | 
| Conread position: | 334-560 | 
| Cow position: | chr3:58286260-58286030 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 12, 61 | 
| Conread position: | 382-561 | 
| Cow position: | chr3:23944783-23944968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 383-554 | 
| Cow position: | chr3:39970187-39970006 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 407-554 | 
| Cow position: | chr3:15081028-15080879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 409-555 | 
| Cow position: | chr3:10215298-10215150 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 415-558 | 
| Cow position: | chr3:23496837-23496692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 148 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 100, 34 | 
| Conread position: | 419-557 | 
| Cow position: | chr3:16810068-16809922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 26, 0 | 
Show alignments to all cow chromosomes.
