Cow genome map

Conread name: Pig1-70J06

Conread position: 230-558
Cow position: chr9:47547277-47547616 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 225
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 36

Conread position: 248-556
Cow position: chr9:38385422-38385732 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 223
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 30, 131

Conread position: 252-556
Cow position: chr9:3932414-3932105 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 212
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 49, 29

Conread position: 252-561
Cow position: chr9:32396400-32396080 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 214
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 29, 81

Conread position: 253-556
Cow position: chr9:2858985-2858680 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 201
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 92, 15

Conread position: 257-483
Cow position: chr9:41932515-41932287 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 22, 49

Conread position: 257-522
Cow position: chr9:14185133-14184853 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 203
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 11, 0

Conread position: 257-553
Cow position: chr9:48773771-48773488 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 199
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 18, 189

Conread position: 257-555
Cow position: chr9:8099380-8099678 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 202
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 86, 128

Conread position: 257-555
Cow position: chr9:27085911-27085601 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 210
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 298

Conread position: 257-556
Cow position: chr9:3959497-3959198 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 19, 139

Conread position: 257-556
Cow position: chr9:5341077-5340775 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 204
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 92, 29

Conread position: 257-556
Cow position: chr9:44579519-44579208 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 204
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 105

Conread position: 257-560
Cow position: chr9:214016-214330 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 24, 106

Conread position: 257-561
Cow position: chr9:19380067-19379766 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 204
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 168

Conread position: 257-561
Cow position: chr9:28948299-28947988 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 215
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 93, 171

Conread position: 258-473
Cow position: chr9:38546845-38546624 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 92, 28

Conread position: 258-517
Cow position: chr9:44518001-44517746 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 174
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 95, 51

Conread position: 259-552
Cow position: chr9:3724618-3724915 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 205
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 88, 0

Conread position: 259-556
Cow position: chr9:34092967-34093288 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 231
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 85, 0

Conread position: 260-558
Cow position: chr9:29808905-29808602 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 21, 119

Conread position: 261-556
Cow position: chr9:18110435-18110723 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 204
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 89, 24

Conread position: 267-479
Cow position: chr9:63654685-63654897 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 83, 138

Conread position: 267-556
Cow position: chr9:34310471-34310172 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 14, 0

Conread position: 268-555
Cow position: chr9:26099776-26099480 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 204
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 81, 50

Conread position: 274-558
Cow position: chr9:61739342-61739059 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 186
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 165, 79

Conread position: 275-545
Cow position: chr9:8637084-8636805 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 75, 88

Conread position: 275-560
Cow position: chr9:11155930-11155646 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 78, 30

Conread position: 276-555
Cow position: chr9:43814868-43814585 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 121

Conread position: 285-522
Cow position: chr9:20848355-20848113 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 161
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 285-551
Cow position: chr9:9552503-9552234 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 65, 105

Conread position: 285-554
Cow position: chr9:11299283-11299547 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 176
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 160, 66

Conread position: 285-554
Cow position: chr9:17740530-17740804 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 186
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 155, 60

Conread position: 285-554
Cow position: chr9:23430731-23431002 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 77

Conread position: 285-554
Cow position: chr9:28747107-28747380 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 65, 102

Conread position: 285-554
Cow position: chr9:46316370-46316642 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 173
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 285-554
Cow position: chr9:53109939-53109675 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 176
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 159, 0

Conread position: 285-557
Cow position: chr9:6192046-6192322 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 183
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 65, 90

Conread position: 286-500
Cow position: chr9:10634605-10634818 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 157, 6

Conread position: 286-511
Cow position: chr9:3053816-3054042 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 152
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 65, 92

Conread position: 286-517
Cow position: chr9:24428201-24428435 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 155
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 116

Conread position: 286-521
Cow position: chr9:1855695-1855459 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 66, 88

Conread position: 286-522
Cow position: chr9:1520312-1520552 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 160
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 64, 113

Conread position: 286-522
Cow position: chr9:39681775-39681535 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 157
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 67, 194

Conread position: 286-526
Cow position: chr9:5524607-5524367 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 162
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 99

Conread position: 286-553
Cow position: chr9:3388108-3387836 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 178
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 67, 177

Conread position: 286-554
Cow position: chr9:648189-647919 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 178
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 151, 7

Conread position: 286-554
Cow position: chr9:5501263-5501001 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 182
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 66, 7

Conread position: 286-554
Cow position: chr9:28726314-28726577 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 185
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 159, 58

Conread position: 286-554
Cow position: chr9:44831640-44831911 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 63, 113

Conread position: 286-554
Cow position: chr9:53607977-53608251 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 64, 178

Conread position: 286-554
Cow position: chr9:61023025-61022754 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 187
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 68, 50

Conread position: 286-555
Cow position: chr9:47926322-47926052 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 175
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 78

Conread position: 286-556
Cow position: chr9:18162735-18163014 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 190
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 64, 175

Conread position: 286-556
Cow position: chr9:29184720-29184991 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 184
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 64, 103

Conread position: 286-556
Cow position: chr9:35375838-35375570 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 179
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 159

Conread position: 286-556
Cow position: chr9:35904334-35904604 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 67, 240

Conread position: 286-556
Cow position: chr9:55074717-55074988 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 14, 148

Conread position: 286-556
Cow position: chr9:64453708-64453980 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 64, 45

Conread position: 286-557
Cow position: chr9:1950335-1950058 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 192
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 57, 39

Conread position: 286-557
Cow position: chr9:2597268-2597539 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 190
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 68, 38

Conread position: 286-557
Cow position: chr9:16300151-16300425 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 64, 155

Conread position: 286-557
Cow position: chr9:20407052-20406775 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 65, 77

Conread position: 286-557
Cow position: chr9:20942197-20942468 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 179
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 68, 8

Conread position: 286-557
Cow position: chr9:37017301-37017025 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 64, 113

Conread position: 286-558
Cow position: chr9:6089519-6089238 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 187
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 87, 222

Conread position: 286-558
Cow position: chr9:6210398-6210674 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 35

Conread position: 286-558
Cow position: chr9:21888585-21888309 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 187
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 64, 8

Conread position: 286-558
Cow position: chr9:22433526-22433792 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 185
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 67, 133

Conread position: 286-558
Cow position: chr9:59171964-59172239 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 183
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 7

Conread position: 286-559
Cow position: chr9:30664366-30664643 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 67, 7

Conread position: 286-559
Cow position: chr9:31115407-31115681 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 184
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 67, 8

Conread position: 286-560
Cow position: chr9:48017406-48017685 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 189
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 64, 113

Conread position: 287-553
Cow position: chr9:22617035-22616769 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 176
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 112

Conread position: 287-554
Cow position: chr9:3411184-3410913 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 180
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 66, 145

Conread position: 287-554
Cow position: chr9:28773533-28773265 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 187
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 63, 91

Conread position: 287-557
Cow position: chr9:11146247-11146517 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 201
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 63, 80

Conread position: 288-558
Cow position: chr9:17568552-17568280 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 65, 151

Conread position: 290-500
Cow position: chr9:3844653-3844875 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 60, 149

Conread position: 290-556
Cow position: chr9:20038748-20039003 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 60, 109

Conread position: 292-556
Cow position: chr9:5071203-5071463 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 58, 88

Conread position: 293-498
Cow position: chr9:62657202-62656994 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 293-555
Cow position: chr9:13186318-13186570 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 58, 87

Conread position: 293-561
Cow position: chr9:9491198-9490932 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 187
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 61, 86

Conread position: 294-554
Cow position: chr9:33823500-33823242 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 56, 105

Conread position: 300-556
Cow position: chr9:24726276-24726534 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 162
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 145, 0

Conread position: 365-560
Cow position: chr9:25958748-25958554 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 78, 17

Conread position: 388-555
Cow position: chr9:22940384-22940223 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 123, 5

Conread position: 390-555
Cow position: chr9:25546944-25546779 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 53, 24

Conread position: 394-554
Cow position: chr9:20091346-20091185 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 67

Conread position: 398-558
Cow position: chr9:18093360-18093523 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 47, 90

Conread position: 404-554
Cow position: chr9:62357233-62357385 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 109
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 41, 0

Conread position: 423-559
Cow position: chr9:30749306-30749446 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 22, 0

Show alignments to all cow chromosomes.